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## A

ACSR - Static variable in class avrora.sim.mcu.ADC
ACSR - Static variable in interface avrora.stack.IORegisterConstants
ACTION - Static variable in class avrora.Main
ADC - class avrora.sim.mcu.ADC.
  The `ADC` class represents an on-chip device on the ATMega series of microcontroller that is capable of converting an analog voltage value into a 10-bit digital value.
ADC(AtmelMicrocontroller, int) - Constructor for class avrora.sim.mcu.ADC
ADC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ADC - Static variable in interface avrora.syntax.gas.GASParserConstants
ADC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ADC.ADCInput - interface avrora.sim.mcu.ADC.ADCInput.
  The `ADCInput` interface is used by inputs into the analog to digital converter.
ADC.ADCRegister - class avrora.sim.mcu.ADC.ADCRegister.
  Abstract class grouping together registers related to the ADC.
ADC.ADCRegister() - Constructor for class avrora.sim.mcu.ADC.ADCRegister
ADC.ControlRegister - class avrora.sim.mcu.ADC.ControlRegister.
  `ControlRegister` defines the behavior of the ADC control register,
ADC.DataRegister - class avrora.sim.mcu.ADC.DataRegister.
  `DataRegister` defines the behavior of the ADC's 10-bit data register.
ADC.DataRegister() - Constructor for class avrora.sim.mcu.ADC.DataRegister
ADC.MUXRegister - class avrora.sim.mcu.ADC.MUXRegister.
  `MUXRegister` defines the behavior of the ADMUX register.
ADC.MUXRegister() - Constructor for class avrora.sim.mcu.ADC.MUXRegister
ADCH - Static variable in class avrora.sim.mcu.ADC
ADCH - Static variable in interface avrora.stack.IORegisterConstants
ADCL - Static variable in class avrora.sim.mcu.ADC
ADCL - Static variable in interface avrora.stack.IORegisterConstants
ADCSRA - Static variable in class avrora.sim.mcu.ADC
ADCSRA - Static variable in interface avrora.stack.IORegisterConstants
ADD - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
ADD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ADD - Static variable in interface avrora.syntax.gas.GASParserConstants
ADD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ADDRESS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ADIW - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ADIW - Static variable in interface avrora.syntax.gas.GASParserConstants
ADIW - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ADMUX - Static variable in class avrora.sim.mcu.ADC
ADMUX - Static variable in interface avrora.stack.IORegisterConstants
ADR_set - Static variable in class avrora.core.Register
ADVANCE - Static variable in interface avrora.test.probes.ProbeParserConstants
ALLOW_REGISTER_UPDATES - Variable in class avrora.sim.dbbc.DBBC
AND - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
AND - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
AND - Static variable in interface avrora.syntax.gas.GASParserConstants
AND - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ANDI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ANDI - Static variable in interface avrora.syntax.gas.GASParserConstants
ANDI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ARCH - Static variable in interface avrora.syntax.gas.GASParserConstants
ARCHITECTURE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
ASR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ASR - Static variable in interface avrora.syntax.gas.GASParserConstants
ASR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ASSR - Static variable in interface avrora.stack.IORegisterConstants
ASTNode - class avrora.syntax.ASTNode.
  The `ASTNode` class is a unification of all syntax-related items that are dealt with in loading source programs.
ASTNode() - Constructor for class avrora.syntax.ASTNode
ATMEGA128_EEPROM_SIZE - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA128_FLASH_SIZE - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA128_IOREG_SIZE - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA128_NUM_INTS - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA128_NUM_PINS - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA128_SRAM_SIZE - Static variable in class avrora.sim.mcu.ATMega128
ATMEGA16_EEPROM_SIZE - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA16_FLASH_SIZE - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA16_IOREG_SIZE - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA16_NUM_INTS - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA16_NUM_PINS - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA16_SRAM_SIZE - Static variable in class avrora.sim.mcu.ATMega16
ATMEGA32_EEPROM_SIZE - Static variable in class avrora.sim.mcu.ATMega32
ATMEGA32_FLASH_SIZE - Static variable in class avrora.sim.mcu.ATMega32
ATMEGA32_IOREG_SIZE - Static variable in class avrora.sim.mcu.ATMega32
ATMEGA32_NUM_INTS - Static variable in class avrora.sim.mcu.ATMega32
ATMEGA32_NUM_PINS - Static variable in class avrora.sim.mcu.ATMega32
ATMEGA32_SRAM_SIZE - Static variable in class avrora.sim.mcu.ATMega32
ATMega128 - class avrora.sim.mcu.ATMega128.
  The `ATMega128` class represents the ATMega128 microcontroller from Atmel.
ATMega128(int, ClockDomain, InterpreterFactory, Program) - Constructor for class avrora.sim.mcu.ATMega128
ATMega128.Factory - class avrora.sim.mcu.ATMega128.Factory.
ATMega128.Factory() - Constructor for class avrora.sim.mcu.ATMega128.Factory
ATMega16 - class avrora.sim.mcu.ATMega16.
  The `ATMega16` class represents the ATMega16 microcontroller from Atmel.
ATMega16(int, ClockDomain, InterpreterFactory, Program) - Constructor for class avrora.sim.mcu.ATMega16
ATMega16.Factory - class avrora.sim.mcu.ATMega16.Factory.
ATMega16.Factory() - Constructor for class avrora.sim.mcu.ATMega16.Factory
ATMega32 - class avrora.sim.mcu.ATMega32.
  The `ATMega32` class represents the ATMega32 microcontroller from Atmel.
ATMega32(int, ClockDomain, InterpreterFactory, Program) - Constructor for class avrora.sim.mcu.ATMega32
ATMega32.Factory - class avrora.sim.mcu.ATMega32.Factory.
ATMega32.Factory() - Constructor for class avrora.sim.mcu.ATMega32.Factory
ATMegaFamily - class avrora.sim.mcu.ATMegaFamily.
  The `ATMegaFamily` class encapsulates much of the common functionality among the ATMega family microcontrollers from Atmel.
ATMegaFamily(ClockDomain, MicrocontrollerProperties, FiniteStateMachine) - Constructor for class avrora.sim.mcu.ATMegaFamily
ATMegaFamily.DirectionRegister - class avrora.sim.mcu.ATMegaFamily.DirectionRegister.
  The `DirectionRegister` class implements an active register that sets the output direction of the general purpose IO pins which are present on the ATMega series.
ATMegaFamily.DirectionRegister(AtmelMicrocontroller.Pin[]) - Constructor for class avrora.sim.mcu.ATMegaFamily.DirectionRegister
ATMegaFamily.FlagBit - class avrora.sim.mcu.ATMegaFamily.FlagBit.
ATMegaFamily.FlagBit(InterruptTable, boolean, int) - Constructor for class avrora.sim.mcu.ATMegaFamily.FlagBit
ATMegaFamily.FlagRegister - class avrora.sim.mcu.ATMegaFamily.FlagRegister.
ATMegaFamily.FlagRegister(BaseInterpreter, int[]) - Constructor for class avrora.sim.mcu.ATMegaFamily.FlagRegister
ATMegaFamily.MaskRegister - class avrora.sim.mcu.ATMegaFamily.MaskRegister.
ATMegaFamily.MaskRegister(BaseInterpreter, int[]) - Constructor for class avrora.sim.mcu.ATMegaFamily.MaskRegister
ATMegaFamily.PinRegister - class avrora.sim.mcu.ATMegaFamily.PinRegister.
  The `PinRegister` class implements an active register that acts as the read register (input register) for the general purpose IO pins.
ATMegaFamily.PinRegister(AtmelMicrocontroller.Pin[]) - Constructor for class avrora.sim.mcu.ATMegaFamily.PinRegister
ATMegaFamily.PortRegister - class avrora.sim.mcu.ATMegaFamily.PortRegister.
  The `PortRegister` class implements an active register that acts as the write register (output register) for the general purpose IO pins.
ATMegaFamily.PortRegister(AtmelMicrocontroller.Pin[]) - Constructor for class avrora.sim.mcu.ATMegaFamily.PortRegister
ATMegaFamily.Timer0 - class avrora.sim.mcu.ATMegaFamily.Timer0.
  `Timer0` is the default 8-bit timer on the ATMega128.
ATMegaFamily.Timer0() - Constructor for class avrora.sim.mcu.ATMegaFamily.Timer0
ATMegaFamily.Timer0.ASSRRegister - class avrora.sim.mcu.ATMegaFamily.Timer0.ASSRRegister.
ATMegaFamily.Timer0.ASSRRegister() - Constructor for class avrora.sim.mcu.ATMegaFamily.Timer0.ASSRRegister
ATMegaFamily.Timer1 - class avrora.sim.mcu.ATMegaFamily.Timer1.
  `Timer1` is a 16-bit timer available on the ATMega128.
ATMegaFamily.Timer1(int) - Constructor for class avrora.sim.mcu.ATMegaFamily.Timer1
ATMegaFamily.Timer2 - class avrora.sim.mcu.ATMegaFamily.Timer2.
  `Timer2` is an additional 8-bit timer on the ATMega128.
ATMegaFamily.Timer2() - Constructor for class avrora.sim.mcu.ATMegaFamily.Timer2
ATMegaFamily.Timer3 - class avrora.sim.mcu.ATMegaFamily.Timer3.
  `Timer3` is an additional 16-bit timer available on the ATMega128, but not in ATMega103 compatability mode.
ATMegaFamily.Timer3(int) - Constructor for class avrora.sim.mcu.ATMegaFamily.Timer3
AVRErrorReporter - class avrora.syntax.AVRErrorReporter.
  The `AVRErrorReporter` contains one method per compilation error.
AVRErrorReporter() - Constructor for class avrora.syntax.AVRErrorReporter
AbstractArithmetic - class avrora.stack.AbstractArithmetic.
  The `AbstractArithmetic` arithmetic class implements operations that are useful for working on abstract integers which are represented as characters.
AbstractArithmetic() - Constructor for class avrora.stack.AbstractArithmetic
AbstractInterpreter - class avrora.stack.AbstractInterpreter.
  The `AbstractInterpreter` class implements the abstract transfer function for each instruction type.
AbstractParseException - exception avrora.syntax.AbstractParseException.
  The `AbstractParseException` represents a parse exception that was thrown by one of the parsers generated by JavaCC.
AbstractParseException(AbstractToken, int[][], String[]) - Constructor for class avrora.syntax.AbstractParseException
  This constructor is used by the method "generateParseException" in the generated parser.
AbstractParseException() - Constructor for class avrora.syntax.AbstractParseException
  The following constructors are for use by you for whatever purpose you can think of.
AbstractParseException(String) - Constructor for class avrora.syntax.AbstractParseException
AbstractParser - class avrora.syntax.AbstractParser.
  The `AbstractParser` is a superclass of all parsers introduced to give multiple JavaCC-generated parsers a parent class.
AbstractParser() - Constructor for class avrora.syntax.AbstractParser
AbstractState - class avrora.stack.AbstractState.
  The `AbstractState` class represents an abstract state within the state space.
AbstractToken - class avrora.syntax.AbstractToken.
  This class is used to unify the Token classes from all JavaCC-generated parsers.
AbstractToken() - Constructor for class avrora.syntax.AbstractToken
Action - class avrora.actions.Action.
  The `Action` class defines a new action that the main driver is capable of executing.
Action(String) - Constructor for class avrora.actions.Action
  The constructor for the `Action` class initializes the referneces to the short name and help string for this action as well as creating the internal options.
ActiveRegister - interface avrora.sim.ActiveRegister.
  The `ActiveRegister` interface models the behavior of a register that may perform some simulation work as a result of being read or written.
AddExpr() - Method in class avrora.syntax.atmel.AtmelParser
AddExpr() - Method in class avrora.syntax.gas.GASParser
Add_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
AnalyzeStackAction - class avrora.actions.AnalyzeStackAction.
  The `AnalyzeStackAction` class is an extension of the `Main.Action` class that allows the stack tool to be reached from the command line.
AnalyzeStackAction() - Constructor for class avrora.actions.AnalyzeStackAction
  The default constructor of the `AnalyzeStackAction` class simply creates an empty instance with the appropriate name and help string.
Analyzer - class avrora.stack.Analyzer.
  The `Analyzer` class implements the analysis phase that determines the transition relation between the states in the abstract state space.
Analyzer(Program) - Constructor for class avrora.stack.Analyzer
Analyzer.ContextSensitivePolicy - class avrora.stack.Analyzer.ContextSensitivePolicy.
  The `ContextSensitive` class implements the context-sensitive analysis similar to 1-CFA.
Analyzer.ContextSensitivePolicy() - Constructor for class avrora.stack.Analyzer.ContextSensitivePolicy
Analyzer.MonitorThread - class avrora.stack.Analyzer.MonitorThread.
  The `MonitorThread` class represents a thread instance that constantly monitors the progress of the stack analysis and reports on the number of states explored, edges inserted, states on the frontier, as well statistics about the propagation phase.
Analyzer.MonitorThread() - Constructor for class avrora.stack.Analyzer.MonitorThread
AnalyzerPolicy - interface avrora.stack.AnalyzerPolicy.
  The `Policy` interface allows for more modular, composable analysis.
AndExpr() - Method in class avrora.syntax.atmel.AtmelParser
AndExpr() - Method in class avrora.syntax.gas.GASParser
And_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
ArchDirective() - Method in class avrora.syntax.gas.GASParser
Architecture - class avrora.core.isdl.Architecture.
  The `Architecture` class represents a collection of instructions, encodings, operands, and subroutines that describe an instruction set architecture.
Architecture(Token) - Constructor for class avrora.core.isdl.Architecture
  The constructor for the `Architecture` class creates an instance with the specified name that is empty and ready to receive new instruction declarations, encodings, etc.
Architecture() - Method in class avrora.core.isdl.parser.ISDLParser
Architecture.EncodingVisitor - interface avrora.core.isdl.Architecture.EncodingVisitor.
  The `EncodingVisitor` interface is a simple interface that can be used to iterate over the encodings declared in the instruction set specification.
Architecture.InstrVisitor - interface avrora.core.isdl.Architecture.InstrVisitor.
  The `InstrVisitor` interface is a simple interface that can be used to iterate over the instructions declared in the instruction set specification.
Architecture.OperandVisitor - interface avrora.core.isdl.Architecture.OperandVisitor.
  The `OperandVisitor` interface is a simple interface that can be used to iterate over the operands declared in the instruction set specification.
Architecture.PrettyPrinter - class avrora.core.isdl.Architecture.PrettyPrinter.
Architecture.SubroutineVisitor - interface avrora.core.isdl.Architecture.SubroutineVisitor.
  The `SubroutineVisitor` interface is a simple interface that can be used to iterate over the subroutines declared in the instruction set specification.
Architecture.Visitor - interface avrora.core.isdl.Architecture.Visitor.
  The `Visitor` class represents a visitor over the elements of the architecture description.
Arith - class avrora.core.isdl.ast.Arith.
  The `Arith` class is a container for classes that represent integer arithmetic in the IR.
Arith() - Constructor for class avrora.core.isdl.ast.Arith
Arith.AddExpr - class avrora.core.isdl.ast.Arith.AddExpr.
  The `AddExpr` inner class represents the addition of two integer values that produces a new integer value.
Arith.AddExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.AddExpr
Arith.AndExpr - class avrora.core.isdl.ast.Arith.AndExpr.
  The `AndExpr` class represents the bitwise and of two integer values that produces a single integer result.
Arith.AndExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.AndExpr
Arith.BinOp - class avrora.core.isdl.ast.Arith.BinOp.
  The `BinOp` inner class represents an operation on two integers with an infix binary operation.
Arith.BinOp(int, Expr, String, Expr) - Constructor for class avrora.core.isdl.ast.Arith.BinOp
  The constructor of the `BinOp` class initializes the public final fields that form the structure of this expression.
Arith.CompExpr - class avrora.core.isdl.ast.Arith.CompExpr.
  The `CompExpr` class represents the bitwise complement of an integer value that produces a single integer result.
Arith.CompExpr(Expr) - Constructor for class avrora.core.isdl.ast.Arith.CompExpr
Arith.DivExpr - class avrora.core.isdl.ast.Arith.DivExpr.
  The `DivExpr` inner class represents a division operation on two integer values which produces a single integer result.
Arith.DivExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.DivExpr
Arith.MulExpr - class avrora.core.isdl.ast.Arith.MulExpr.
  The `MulExpr` inner class represents the multiplication of two integer values which produces a single integer result.
Arith.MulExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.MulExpr
Arith.NegExpr - class avrora.core.isdl.ast.Arith.NegExpr.
  The `NegExpr` class represents the negation (sign reversal) of an integer value that produces a single integer result.
Arith.NegExpr(Expr) - Constructor for class avrora.core.isdl.ast.Arith.NegExpr
Arith.OrExpr - class avrora.core.isdl.ast.Arith.OrExpr.
  The `OrExpr` class represents the bitwise inclusive or of two integer values that produces a single integer result.
Arith.OrExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.OrExpr
Arith.ShiftLeftExpr - class avrora.core.isdl.ast.Arith.ShiftLeftExpr.
  The `ShiftLeftExpr` class represents the shift left of an integer value that produces a single integer result.
Arith.ShiftLeftExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.ShiftLeftExpr
Arith.ShiftRightExpr - class avrora.core.isdl.ast.Arith.ShiftRightExpr.
  The `ShiftRightExpr` class represents the shift left of an integer value that produces a single integer result.
Arith.ShiftRightExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.ShiftRightExpr
Arith.SubExpr - class avrora.core.isdl.ast.Arith.SubExpr.
  The `SubExpr` inner class represents the subtraction of one integer value from another that results in a new integer value.
Arith.SubExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.SubExpr
Arith.UnOp - class avrora.core.isdl.ast.Arith.UnOp.
  The `UnOp` inner class represents an operation on a single integer value.
Arith.UnOp(String, Expr) - Constructor for class avrora.core.isdl.ast.Arith.UnOp
  The constructor of the `UnOp` class initializes the public final fields that form the structure of this expression.
Arith.XorExpr - class avrora.core.isdl.ast.Arith.XorExpr.
  The `XorExpr` class represents the bitwise exclusive or of two integer values that produces a single integer result.
Arith.XorExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Arith.XorExpr
Arithmetic - class avrora.util.Arithmetic.
  The `Arithmetic` class implements a set of useful methods that are used by the simulator and assembler for converting java types to various data types used by the machine.
Arithmetic() - Constructor for class avrora.util.Arithmetic
Assembler - class avrora.core.Assembler.
  The `Assembler` class represents an assembler that is capable of encoding AVR assembly instructions into binary machine code.
Assembler() - Constructor for class avrora.core.Assembler
AssignStmt - class avrora.core.isdl.ast.AssignStmt.
  The `AssignStmt` class represents an assignment statement in the IR.
AssignStmt(Expr) - Constructor for class avrora.core.isdl.ast.AssignStmt
  The constructor of the `AssignStmt` class simply stores a reference to the right hand side expression internally.
Assignment() - Method in class avrora.core.isdl.parser.ISDLParser
Assignment() - Method in class avrora.syntax.gas.GASParser
AtmelInternalDevice - class avrora.sim.mcu.AtmelInternalDevice.
  The `InteralDevice` class represents an internal device on a microcontroller.
AtmelInternalDevice(String, AtmelMicrocontroller) - Constructor for class avrora.sim.mcu.AtmelInternalDevice
AtmelMicrocontroller - class avrora.sim.mcu.AtmelMicrocontroller.
  The `AtmelMicrocontroller` class represents the common functionality among microcontrollers for the Atmel series.
AtmelMicrocontroller(ClockDomain, MicrocontrollerProperties, FiniteStateMachine) - Constructor for class avrora.sim.mcu.AtmelMicrocontroller
AtmelMicrocontroller.Pin - class avrora.sim.mcu.AtmelMicrocontroller.Pin.
  The `Pin` class implements a model of a pin on the ATMegaFamily for the general purpose IO ports.
AtmelMicrocontroller.Pin(int) - Constructor for class avrora.sim.mcu.AtmelMicrocontroller.Pin
AtmelParser - class avrora.syntax.atmel.AtmelParser.
AtmelParser(InputStream, Module, String) - Constructor for class avrora.syntax.atmel.AtmelParser
AtmelParser(Reader, Module, String) - Constructor for class avrora.syntax.atmel.AtmelParser
AtmelParser(InputStream) - Constructor for class avrora.syntax.atmel.AtmelParser
AtmelParser(Reader) - Constructor for class avrora.syntax.atmel.AtmelParser
AtmelParser(AtmelParserTokenManager) - Constructor for class avrora.syntax.atmel.AtmelParser
AtmelParserConstants - interface avrora.syntax.atmel.AtmelParserConstants.
AtmelParserTokenManager - class avrora.syntax.atmel.AtmelParserTokenManager.
AtmelParserTokenManager(SimpleCharStream) - Constructor for class avrora.syntax.atmel.AtmelParserTokenManager
AtmelParserTokenManager(SimpleCharStream, int) - Constructor for class avrora.syntax.atmel.AtmelParserTokenManager
AtmelProgramReader - class avrora.syntax.atmel.AtmelProgramReader.
  The `AtmelProgramReader` is an implementation of the `ProgramReader` that reads source assembly files in the Atmel style syntax.
AtmelProgramReader() - Constructor for class avrora.syntax.atmel.AtmelProgramReader
AutomatedTester - class avrora.test.AutomatedTester.
  The `AutomatedTester` is a class that is designed to be an in-program test facility.
AutomatedTester() - Constructor for class avrora.test.AutomatedTester
Avrora - class avrora.Avrora.
  The `Avrora` class contains several utilities relating to exceptions and errors within Avrora.
Avrora() - Constructor for class avrora.Avrora
Avrora.Error - error avrora.Avrora.Error.
  The `Error` class is the base class of all errors in Avrora.
Avrora.Error(String) - Constructor for class avrora.Avrora.Error
Avrora.Error(String, String) - Constructor for class avrora.Avrora.Error
Avrora.InternalError - error avrora.Avrora.InternalError.
  The `InternalError` class is a class of errors corresponding to exceptional conditions within Avrora.
Avrora.InternalError(String) - Constructor for class avrora.Avrora.InternalError
Avrora.Unexpected - error avrora.Avrora.Unexpected.
  The `Unexpected` class wraps an unexpected exception that may happen during execution.
Avrora.Unexpected(Throwable) - Constructor for class avrora.Avrora.Unexpected
AvroraGui - class avrora.gui.AvroraGui.
  The `AvroraGUI` is the top level GUI component.
AvroraGui.PaintThread - class avrora.gui.AvroraGui.PaintThread.
  This thread will call the various monitor update and repaint methods for whatever monitor is currently being display in real time.
AvroraGui.PaintThread() - Constructor for class avrora.gui.AvroraGui.PaintThread
absolute(int) - Method in class avrora.stack.isea.ISEInterpreter
accept(InstrVisitor) - Method in class avrora.core.Instr.ADC
accept(InstrVisitor) - Method in class avrora.core.Instr.ADD
accept(InstrVisitor) - Method in class avrora.core.Instr.ADIW
accept(InstrVisitor) - Method in class avrora.core.Instr.AND
accept(InstrVisitor) - Method in class avrora.core.Instr.ANDI
accept(InstrVisitor) - Method in class avrora.core.Instr.ASR
accept(InstrVisitor) - Method in class avrora.core.Instr.BCLR
accept(InstrVisitor) - Method in class avrora.core.Instr.BLD
accept(InstrVisitor) - Method in class avrora.core.Instr.BRBC
accept(InstrVisitor) - Method in class avrora.core.Instr.BRBS
accept(InstrVisitor) - Method in class avrora.core.Instr.BRCC
accept(InstrVisitor) - Method in class avrora.core.Instr.BRCS
accept(InstrVisitor) - Method in class avrora.core.Instr.BREAK
accept(InstrVisitor) - Method in class avrora.core.Instr.BREQ
accept(InstrVisitor) - Method in class avrora.core.Instr.BRGE
accept(InstrVisitor) - Method in class avrora.core.Instr.BRHC
accept(InstrVisitor) - Method in class avrora.core.Instr.BRHS
accept(InstrVisitor) - Method in class avrora.core.Instr.BRID
accept(InstrVisitor) - Method in class avrora.core.Instr.BRIE
accept(InstrVisitor) - Method in class avrora.core.Instr.BRLO
accept(InstrVisitor) - Method in class avrora.core.Instr.BRLT
accept(InstrVisitor) - Method in class avrora.core.Instr.BRMI
accept(InstrVisitor) - Method in class avrora.core.Instr.BRNE
accept(InstrVisitor) - Method in class avrora.core.Instr.BRPL
accept(InstrVisitor) - Method in class avrora.core.Instr.BRSH
accept(InstrVisitor) - Method in class avrora.core.Instr.BRTC
accept(InstrVisitor) - Method in class avrora.core.Instr.BRTS
accept(InstrVisitor) - Method in class avrora.core.Instr.BRVC
accept(InstrVisitor) - Method in class avrora.core.Instr.BRVS
accept(InstrVisitor) - Method in class avrora.core.Instr.BSET
accept(InstrVisitor) - Method in class avrora.core.Instr.BST
accept(InstrVisitor) - Method in class avrora.core.Instr.CALL
accept(InstrVisitor) - Method in class avrora.core.Instr.CBI
accept(InstrVisitor) - Method in class avrora.core.Instr.CBR
accept(InstrVisitor) - Method in class avrora.core.Instr.CLC
accept(InstrVisitor) - Method in class avrora.core.Instr.CLH
accept(InstrVisitor) - Method in class avrora.core.Instr.CLI
accept(InstrVisitor) - Method in class avrora.core.Instr.CLN
accept(InstrVisitor) - Method in class avrora.core.Instr.CLR
accept(InstrVisitor) - Method in class avrora.core.Instr.CLS
accept(InstrVisitor) - Method in class avrora.core.Instr.CLT
accept(InstrVisitor) - Method in class avrora.core.Instr.CLV
accept(InstrVisitor) - Method in class avrora.core.Instr.CLZ
accept(InstrVisitor) - Method in class avrora.core.Instr.COM
accept(InstrVisitor) - Method in class avrora.core.Instr.CP
accept(InstrVisitor) - Method in class avrora.core.Instr.CPC
accept(InstrVisitor) - Method in class avrora.core.Instr.CPI
accept(InstrVisitor) - Method in class avrora.core.Instr.CPSE
accept(InstrVisitor) - Method in class avrora.core.Instr.DEC
accept(InstrVisitor) - Method in class avrora.core.Instr.EICALL
accept(InstrVisitor) - Method in class avrora.core.Instr.EIJMP
accept(InstrVisitor) - Method in class avrora.core.Instr.ELPM
accept(InstrVisitor) - Method in class avrora.core.Instr.ELPMD
accept(InstrVisitor) - Method in class avrora.core.Instr.ELPMPI
accept(InstrVisitor) - Method in class avrora.core.Instr.EOR
accept(InstrVisitor) - Method in class avrora.core.Instr.FMUL
accept(InstrVisitor) - Method in class avrora.core.Instr.FMULS
accept(InstrVisitor) - Method in class avrora.core.Instr.FMULSU
accept(InstrVisitor) - Method in class avrora.core.Instr.ICALL
accept(InstrVisitor) - Method in class avrora.core.Instr.IJMP
accept(InstrVisitor) - Method in class avrora.core.Instr.IN
accept(InstrVisitor) - Method in class avrora.core.Instr.INC
accept(InstrVisitor) - Method in class avrora.core.Instr.JMP
accept(InstrVisitor) - Method in class avrora.core.Instr.LD
accept(InstrVisitor) - Method in class avrora.core.Instr.LDD
accept(InstrVisitor) - Method in class avrora.core.Instr.LDI
accept(InstrVisitor) - Method in class avrora.core.Instr.LDPD
accept(InstrVisitor) - Method in class avrora.core.Instr.LDPI
accept(InstrVisitor) - Method in class avrora.core.Instr.LDS
accept(InstrVisitor) - Method in class avrora.core.Instr.LPM
accept(InstrVisitor) - Method in class avrora.core.Instr.LPMD
accept(InstrVisitor) - Method in class avrora.core.Instr.LPMPI
accept(InstrVisitor) - Method in class avrora.core.Instr.LSL
accept(InstrVisitor) - Method in class avrora.core.Instr.LSR
accept(InstrVisitor) - Method in class avrora.core.Instr.MOV
accept(InstrVisitor) - Method in class avrora.core.Instr.MOVW
accept(InstrVisitor) - Method in class avrora.core.Instr.MUL
accept(InstrVisitor) - Method in class avrora.core.Instr.MULS
accept(InstrVisitor) - Method in class avrora.core.Instr.MULSU
accept(InstrVisitor) - Method in class avrora.core.Instr.NEG
accept(InstrVisitor) - Method in class avrora.core.Instr.NOP
accept(InstrVisitor) - Method in class avrora.core.Instr.OR
accept(InstrVisitor) - Method in class avrora.core.Instr.ORI
accept(InstrVisitor) - Method in class avrora.core.Instr.OUT
accept(InstrVisitor) - Method in class avrora.core.Instr.POP
accept(InstrVisitor) - Method in class avrora.core.Instr.PUSH
accept(InstrVisitor) - Method in class avrora.core.Instr.RCALL
accept(InstrVisitor) - Method in class avrora.core.Instr.RET
accept(InstrVisitor) - Method in class avrora.core.Instr.RETI
accept(InstrVisitor) - Method in class avrora.core.Instr.RJMP
accept(InstrVisitor) - Method in class avrora.core.Instr.ROL
accept(InstrVisitor) - Method in class avrora.core.Instr.ROR
accept(InstrVisitor) - Method in class avrora.core.Instr.SBC
accept(InstrVisitor) - Method in class avrora.core.Instr.SBCI
accept(InstrVisitor) - Method in class avrora.core.Instr.SBI
accept(InstrVisitor) - Method in class avrora.core.Instr.SBIC
accept(InstrVisitor) - Method in class avrora.core.Instr.SBIS
accept(InstrVisitor) - Method in class avrora.core.Instr.SBIW
accept(InstrVisitor) - Method in class avrora.core.Instr.SBR
accept(InstrVisitor) - Method in class avrora.core.Instr.SBRC
accept(InstrVisitor) - Method in class avrora.core.Instr.SBRS
accept(InstrVisitor) - Method in class avrora.core.Instr.SEC
accept(InstrVisitor) - Method in class avrora.core.Instr.SEH
accept(InstrVisitor) - Method in class avrora.core.Instr.SEI
accept(InstrVisitor) - Method in class avrora.core.Instr.SEN
accept(InstrVisitor) - Method in class avrora.core.Instr.SER
accept(InstrVisitor) - Method in class avrora.core.Instr.SES
accept(InstrVisitor) - Method in class avrora.core.Instr.SET
accept(InstrVisitor) - Method in class avrora.core.Instr.SEV
accept(InstrVisitor) - Method in class avrora.core.Instr.SEZ
accept(InstrVisitor) - Method in class avrora.core.Instr.SLEEP
accept(InstrVisitor) - Method in class avrora.core.Instr.SPM
accept(InstrVisitor) - Method in class avrora.core.Instr.ST
accept(InstrVisitor) - Method in class avrora.core.Instr.STD
accept(InstrVisitor) - Method in class avrora.core.Instr.STPD
accept(InstrVisitor) - Method in class avrora.core.Instr.STPI
accept(InstrVisitor) - Method in class avrora.core.Instr.STS
accept(InstrVisitor) - Method in class avrora.core.Instr.SUB
accept(InstrVisitor) - Method in class avrora.core.Instr.SUBI
accept(InstrVisitor) - Method in class avrora.core.Instr.SWAP
accept(InstrVisitor) - Method in class avrora.core.Instr.TST
accept(InstrVisitor) - Method in class avrora.core.Instr.WDR
accept(InstrVisitor) - Method in class avrora.core.Instr
  The `accept()` method is part of the visitor pattern for instructions.
accept(Architecture.Visitor) - Method in class avrora.core.isdl.Architecture
  The `accept()` method implements part of the visitor pattern that allows a visitor to visit each part of the architecture description.
accept(Architecture.OperandVisitor) - Method in class avrora.core.isdl.Architecture
accept(Architecture.EncodingVisitor) - Method in class avrora.core.isdl.Architecture
accept(Architecture.SubroutineVisitor) - Method in class avrora.core.isdl.Architecture
accept(Architecture.InstrVisitor) - Method in class avrora.core.isdl.Architecture
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.AddExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.AddExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.AndExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.AndExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Arith.BinOp
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.CompExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.CompExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.DivExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.DivExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.MulExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.MulExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.NegExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.NegExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.OrExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.OrExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.ShiftLeftExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.ShiftLeftExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.ShiftRightExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.ShiftRightExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.SubExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.SubExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Arith.UnOp
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Arith.XorExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Arith.XorExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.BitExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.BitExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.BitExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.CallExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.CallExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.CallExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.CallStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.CallStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.CommentStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.CommentStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.ConversionExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.ConversionExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.ConversionExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.DeclStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.DeclStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Expr
  The `accept()` method implements half of the visitor pattern for expression visitors.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Expr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Expr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.IfStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.IfStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Literal.BoolExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Literal.BoolExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Literal.IntExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Literal.IntExpr
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Literal
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.AndExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.AndExpr
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Logical.BinOp
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.EquExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.EquExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.GreaterEquExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.GreaterEquExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.GreaterExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.GreaterExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.LessEquExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.LessEquExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.LessExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.LessExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.NequExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.NequExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.NotExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.NotExpr
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.OrExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.OrExpr
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.Logical.UnOp
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.Logical.XorExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.Logical.XorExpr
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.MapAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.MapAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.MapBitAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.MapBitAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.MapExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.MapExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.MapExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.ReturnStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.ReturnStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.Stmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.Stmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.VarAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.VarAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.VarBitAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.VarBitAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtVisitor) - Method in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(StmtRebuilder, Object) - Method in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `accept()` method implements one half of the visitor pattern for visiting the abstract syntax trees representing the code of a particular instruction or subroutine.
accept(ExprVisitor) - Method in class avrora.core.isdl.ast.VarExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeVisitor) - Method in class avrora.core.isdl.ast.VarExpr
  The `accept()` method implements one half of the visitor pattern so that client visitors can traverse the syntax tree easily and in an extensible way.
accept(CodeRebuilder, Object) - Method in class avrora.core.isdl.ast.VarExpr
  The `accept()` method implements one half of the visitor pattern for rebuilding of expressions.
accept(InstrVisitor) - Method in class avrora.sim.CodeSegment.ProbedInstr
accept(InstrVisitor) - Method in class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr
accept(DatabaseVisitor) - Method in class avrora.util.profiling.Database
  Accept a visitor into this database.
accumulation - Variable in class avrora.util.profiling.MinMaxMean
action - Variable in class avrora.sim.clock.IntervalSynchronizer
action - Variable in class avrora.sim.clock.StepSynchronizer
action() - Method in class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface
actionPerformed(ActionEvent) - Method in class avrora.gui.AvroraGui
  This allows the GUI to respond to mouse clicks or other events.
activate() - Method in class avrora.sim.energy.Energy
  active energy modeling, e.g. insert the probe into to component state machine
activate() - Static method in class avrora.sim.energy.EnergyControl
  activate the energy model, called by monitors who are interested in energy information
activate() - Method in class avrora.sim.radio.CC1000Radio.Receiver
activate() - Method in class avrora.sim.radio.CC1000Radio.Transmitter
add(int) - Method in class avrora.gui.GraphEvents.MyVector
add(String) - Static method in class avrora.sim.dbbc.DBBC
add(Object) - Method in class avrora.sim.util.TransactionalList
  The `add()` method allows another probe to be inserted into the multicast set.
add(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `add()` method performs addition of two abstract values.
add(StateCache.State) - Method in class avrora.stack.StateCache.Set
add(Expr) - Method in class avrora.syntax.ExprList
add(int) - Method in class avrora.util.profiling.Measurements
  The `add()` method adds a new measurement to this set.
add(long, int) - Method in class avrora.util.profiling.TimedMeasurements
  The `add()` method adds a new measurement to this set.
addAdvance(List, Token) - Method in class avrora.test.probes.ProbeTest
addAll(GraphEvents.MyVector) - Method in class avrora.gui.GraphEvents.MyVector
addAll(StateCache.Set) - Method in class avrora.stack.StateCache.Set
addAll(Measurements) - Method in class avrora.util.profiling.Measurements
  The `addAll()` method adds all of the measurements from another measurement structure to the end of this measurement structure.
addAll(TimedMeasurements) - Method in class avrora.util.profiling.TimedMeasurements
  The `addAll()` method adds all of the measurements from another measurement structure to the end of this measurement structure.
addBytes(AbstractToken, AbstractToken) - Method in class avrora.syntax.objdump.RawModule
addBytes(AbstractToken, AbstractToken, AbstractToken, AbstractToken) - Method in class avrora.syntax.objdump.RawModule
addCategory(String, HelpCategory) - Static method in class avrora.util.help.HelpSystem
  The `addCategory()` method adds a help category to the help system.
addCategory(String, Class) - Static method in class avrora.util.help.HelpSystem
  The `addCategory()` method adds a help category to the help system.
addClass(String, Class) - Method in class avrora.util.ClassMap
  The `addClass()` method adds a short name (alias) for the specified class to the set of default class names.
addClock(Clock) - Method in class avrora.sim.clock.ClockDomain
  The `addClock()` method adds a clock to this clock domain.
addCommandExample(String, String) - Method in class avrora.util.help.HelpCategory
  The `addCommandExample()` method adds a command example, properly formatted, to this section.
addConstant(AbstractToken, Expr) - Method in class avrora.syntax.Module
addConsumer(Energy) - Static method in class avrora.sim.energy.EnergyControl
  add consumer
addDataBytes(ExprList) - Method in class avrora.syntax.Module
addDataDoubleWords(ExprList) - Method in class avrora.syntax.Module
addDataWords(ExprList) - Method in class avrora.syntax.Module
addDefinition(AbstractToken, AbstractToken) - Method in class avrora.syntax.Module
addDevice(AtmelInternalDevice) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `addDevice()` method adds a new internal device to this microcontroller so that it can be retrieved later with `getDevice()`
addDevice(String, Object) - Method in class avrora.sim.platform.Platform
  The `addDevice()` method is used by subclasses of `Platform` to add external devices that are connected to the microcontroller.
addDevices() - Method in class avrora.sim.platform.Mica2
  The `addDevices()` method is used to add the external (off-chip) devices to the platform.
addDevices() - Method in class avrora.sim.platform.Seres
  The `addDevices()` method is used to add the external (off-chip) devices to the platform.
addEdge(ControlFlowGraph.Block, ControlFlowGraph.Block, String) - Method in class avrora.core.ControlFlowGraph
  The `addEdge()` method adds an edge between two blocks with a given type.
addEdge(ControlFlowGraph.Block, ControlFlowGraph.Block) - Method in class avrora.core.ControlFlowGraph
  The `addEdge()` method adds an edge between two blocks.
addEdge(int, int, StateCache.State) - Method in class avrora.stack.StateTransitionGraph.StateInfo
addEdge(StateCache.State, int, int, StateCache.State) - Method in class avrora.stack.StateTransitionGraph
  The `addEdge()` method adds an edge between two states in the state transition graph.
addEncoding(EncodingDecl) - Method in class avrora.core.isdl.Architecture
addEscapes(String) - Static method in class avrora.core.isdl.parser.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in class avrora.syntax.atmel.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in class avrora.syntax.gas.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in class avrora.syntax.objdump.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addEscapes(String) - Static method in class avrora.test.probes.TokenMgrError
  Replaces unprintable characters by their espaced (or unicode escaped) equivalents in the given string
addFrontierState(StateCache.State) - Method in class avrora.stack.StateTransitionGraph
  The `addFrontierState` method adds a state to the frontier.
addIOReg(String, int) - Method in class avrora.sim.mcu.RegisterLayout
  The `addIOReg()` method adds a new IO register with the specified name and address to this register layout.
addIOReg(String, int, String) - Method in class avrora.sim.mcu.RegisterLayout
  The `addIOReg()` method adds a new IO register with the specified name and address to this register layout.
addIndirectEdge(int, int) - Method in class avrora.core.Program
  The `addIndirectEdge` adds an indirect edge between a callsite and possible target.
addIndirectEdges(Program) - Method in class avrora.core.ProgramReader
  The `addIndirectEdges()` method adds any indirect edges specified in the "-indirect-edges" option to the program representation.
addInputPin(PinWire) - Method in class avrora.sim.platform.PinConnect.PinLink
addInsert(List, Token, Token) - Method in class avrora.test.probes.ProbeTest
addInstance(String, Object) - Method in class avrora.util.ClassMap
  The `addInstance()` method adds a mapping between a short name (alias) and an object that is the instance of the class represented by that short name.
addInstr(Instr) - Method in class avrora.core.ControlFlowGraph.Block
  The `addInstr()` method adds an instruction to the end of this basic block.
addInstruction(InstrDecl) - Method in class avrora.core.isdl.Architecture
addInstruction(String, AbstractToken) - Method in class avrora.syntax.Module
addInstruction(String, AbstractToken, SyntacticOperand) - Method in class avrora.syntax.Module
addInstruction(String, AbstractToken, SyntacticOperand, SyntacticOperand) - Method in class avrora.syntax.Module
addInstruction(String, AbstractToken, SyntacticOperand, SyntacticOperand, SyntacticOperand) - Method in class avrora.syntax.Module
addInterrupt(HashMap, String, int) - Static method in class avrora.sim.mcu.AtmelMicrocontroller
addLabel(int, String) - Method in class avrora.syntax.Module.Seg
addLabel(AbstractToken) - Method in class avrora.syntax.Module
addListSection(String, String, List) - Method in class avrora.util.help.HelpCategory
  The `addListSection()` method adds a new section to this help category with the specified list of help items.
addMainCategory(HelpCategory) - Static method in class avrora.Defaults
addMainCode(List) - Method in class avrora.test.probes.ProbeTest
addMonitor(Simulation.Monitor) - Method in class avrora.sim.Simulation.Node
  The `addMonitor()` method is called by a Monitor when it attaches itself to this node.
addNeighbor(LocalAirImpl) - Method in class avrora.sim.radio.freespace.LocalAirImpl
  add neighbor
addNewMonitorType(String, Object) - Static method in class avrora.gui.GUIDefaults
addNode(Simulation.Node) - Method in class avrora.sim.clock.IntervalSynchronizer
  The `addNode()` method adds a node to this synchronization group.
addNode(Simulation.Node) - Method in class avrora.sim.clock.StepSynchronizer
  The `addNode()` method adds a node to this synchronization group.
addNode(Simulation.Node) - Method in class avrora.sim.clock.Synchronizer
  The `addNode()` method adds a node to this synchronization group.
addNode(Simulation.Node) - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `addNode()` method adds a node to this synchronization group.
addOperand(OperandDecl) - Method in class avrora.core.isdl.Architecture
addOptionSection(String, Options) - Method in class avrora.util.help.HelpCategory
  The `addOptionSection()` method adds a new section to this help category with the specified options.
addPacket(Radio.Transmission, double, Radio) - Method in class avrora.sim.radio.freespace.LocalAirImpl
  receive a packet
addPin(HashMap, int, String) - Static method in class avrora.sim.mcu.AtmelMicrocontroller
addPin(HashMap, int, String, String) - Static method in class avrora.sim.mcu.AtmelMicrocontroller
addPin(HashMap, int, String, String, String) - Static method in class avrora.sim.mcu.AtmelMicrocontroller
addQuotedLabel(AbstractToken) - Method in class avrora.syntax.Module
addRadio(Radio) - Method in interface avrora.sim.radio.RadioAir
  The `addRadio()` method adds a new radio to this radio model.
addRadio(Radio) - Method in class avrora.sim.radio.SimpleAir
  The `addRadio()` method adds a new radio to this radio model.
addRadio(Radio) - Method in class avrora.sim.radio.freespace.FreeSpaceAir
addRegisterName(String, AbstractToken) - Method in class avrora.syntax.Module
addRemove(List, Token, Token) - Method in class avrora.test.probes.ProbeTest
addResultEvent(Token, Token) - Method in class avrora.test.probes.ProbeTest
addRun(List) - Method in class avrora.test.probes.ProbeTest
addSection(String, String) - Method in class avrora.util.help.HelpCategory
  The `addSection()` method adds a new section to this help category with the specified title and a paragraph that is automatically formatted when printed out.
addSeresNode(Microcontroller, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire) - Method in class avrora.sim.platform.PinConnect
addSimulatorThread(SimulatorThread) - Method in class avrora.sim.platform.PinConnect.PinNode
addSimulatorThread(SimulatorThread) - Method in class avrora.sim.platform.PinConnect
addStmt(Stmt) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
addSubcategorySection(String, String, List) - Method in class avrora.util.help.HelpCategory
  The `addSubcategorySection` method adds a new section that is a list of subcategories under this main category.
addSubroutine(SubroutineDecl) - Method in class avrora.core.isdl.Architecture
addToVector(int, int) - Method in class avrora.gui.GraphEvents
  A monitor can add data using this function On next repaint, it will be added to the graph
addToWorkList(String, int, ISEState) - Method in class avrora.stack.isea.ISEInterpreter
addTransaction - Variable in class avrora.sim.util.TransactionalList.Link
addVariable(String, int) - Method in class avrora.syntax.Module
add_escapes(String) - Method in class avrora.core.isdl.parser.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in class avrora.syntax.AbstractParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in class avrora.syntax.objdump.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
add_escapes(String) - Method in class avrora.test.probes.ParseException
  Used to convert raw characters to their escaped version when these raw version cannot be used as part of an ASCII string literal.
addrToString(int) - Static method in class avrora.util.StringUtil
  The `addToString()` method converts a numerical address (represented as a signed 32-bit integer) and converts it to a string in the format 0xXXXX where 'X' represents a hexadecimal character.
address - Variable in class avrora.actions.SimAction.BreakPointException
  The `address` field stores the address of the instruction that caused the breakpoint.
address - Variable in class avrora.actions.SimAction.TimeoutException
  The `address` field stores the address of the next instruction to be executed after the timeout.
address - Variable in class avrora.core.Program.Location
  The `address` field records the address of this label as a byte address.
address - Variable in class avrora.core.SourceMapping.Location
  The `address` field records the address of this label as a byte address.
address - Variable in class avrora.sim.CodeSegment.ProbedInstr
address - Variable in class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr
adjustBeginLineColumn(int, int) - Method in class avrora.core.isdl.parser.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class avrora.syntax.atmel.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class avrora.syntax.gas.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class avrora.syntax.objdump.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustBeginLineColumn(int, int) - Method in class avrora.test.probes.SimpleCharStream
  Method to adjust line and column numbers for the start of a token.
adjustPeriod(long) - Method in class avrora.sim.clock.IntervalSynchronizer
  The `adjustPeriod()` method can be used to adjust the period of synchronization while the simulation is executing.
adjustmentValueChanged(AdjustmentEvent) - Method in class avrora.gui.GraphEvents
  If the scroll bar was adjusted, we should repaint.
adjustmentValueChanged(AdjustmentEvent) - Method in class avrora.gui.GraphNumbers
  This function handles a user change to the scroll bar
advance(long) - Method in class avrora.sim.clock.DeltaQueue
  The `advance` method advances timesteps through the queue by the specified number of clock cycles, processing any events.
advance(long) - Method in class avrora.sim.clock.MainClock
  The `advance()` method advances the time of the clock by the number of cycles.
advance() - Method in class avrora.sim.radio.Channel
  The `advance()` method advances the channel to the next period.
advance(int) - Method in class avrora.syntax.Module.Seg
advanceChannel() - Method in class avrora.sim.radio.freespace.LocalAirImpl
advanceClock(long) - Method in class avrora.sim.BaseInterpreter
  The `advanceClock()` method advances the clock by the specified number of cycles.
air - Variable in class avrora.sim.radio.CC1000Radio
  Radio environment into which this radio broadcasts.
align(int, int) - Static method in class avrora.syntax.Module
allCurrentGraphEvents - Static variable in class avrora.gui.VisualRadioMonitor
allCurrentMonitors - Static variable in class avrora.gui.VisualRadioMonitor
allEdges - Variable in class avrora.core.ControlFlowGraph
  The `edges` field contains a reference to the list of edges (instances of class `Edge`) within this control flow graph.
allModeNames - Static variable in class avrora.sim.radio.CC1000Radio
allModeNames() - Static method in class avrora.sim.radio.RadioEnergy
alpha(int) - Static method in class avrora.util.StringUtil
analyze() - Method in class avrora.stack.isea.ISEAnalyzer
analyze(int) - Method in class avrora.stack.isea.ISEAnalyzer
analyze(int) - Method in class avrora.stack.isea.ISEInterpreter
analyzeProcedure(ControlFlowGraph.Block) - Method in class avrora.stack.isea.ISEAnalyzer
and(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `and()` method computes the logical bitwise AND of two abstract values.
and(char, char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `and()` method computes the logical bitwise AND of three abstract values.
andString(int) - Method in class avrora.core.isdl.gen.InterpreterGenerator
app - Variable in class avrora.actions.GUIAction
append(int, StringBuffer, String) - Static method in class avrora.util.Terminal
architecture - Variable in class avrora.core.isdl.gen.InterpreterGenerator
areEqual(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `areEqual()` method tests whether two abstract values are equivalent in the "abstract value" sense.
areKnown(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `areKnown()` method tests whether two abstract values each represent a single, fully known value.
args - Variable in class avrora.core.isdl.ast.CallExpr
  The `args` fields stores a reference to a list of expressions that are evaluated and passed as arguments to the subroutine.
args - Variable in class avrora.core.isdl.ast.CallStmt
  The `args` fields stores a reference to a list of expressions that are evaluated and passed as arguments to the subroutine.
args - Variable in class avrora.gui.AvroraGui
  This is a list of arguments passed by the command line that `avrora.Main` did not process.
argument - Variable in class avrora.syntax.Expr.Func
arguments - Variable in class avrora.util.Options
asConstant() - Method in interface avrora.core.Operand
  The `asConstant()` method uses virtual dispatch to avoid a cast.
asConstant() - Method in class avrora.syntax.SyntacticOperand.Expr
asConstant() - Method in class avrora.syntax.SyntacticOperand
asIORegister(byte) - Static method in class avrora.stack.isea.ISEValue
asInstr() - Method in class avrora.core.Instr
  The `asInstr()` method converts an instruction into an AVR instruction.
asInstr() - Method in class avrora.sim.CodeSegment.ProbedInstr
asInstr() - Method in class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr
asRegister() - Method in interface avrora.core.Operand
  The `asRegister()` method uses virtual dispatch to avoid a cast.
asRegister(byte) - Static method in class avrora.stack.isea.ISEValue
asRegister() - Method in class avrora.syntax.SyntacticOperand.Register
asRegister() - Method in class avrora.syntax.SyntacticOperand
atmel - Variable in class avrora.sim.platform.PinWire
attach(Simulation, List) - Method in class avrora.gui.SingleNodeMonitor
  This actually informs our data structure that the list of nodes passed to this function want this monitor.
attach(Simulation, List) - Method in interface avrora.sim.Simulation.Monitor
av_EIMSK - Variable in class avrora.stack.AbstractState
av_REGISTERS - Variable in class avrora.stack.AbstractState
av_SREG - Variable in class avrora.stack.AbstractState
av_TIMSK - Variable in class avrora.stack.AbstractState
avrora - package avrora
avrora.actions - package avrora.actions
avrora.core - package avrora.core
avrora.core.isdl - package avrora.core.isdl
avrora.core.isdl.ast - package avrora.core.isdl.ast
avrora.core.isdl.dep - package avrora.core.isdl.dep
avrora.core.isdl.gen - package avrora.core.isdl.gen
avrora.core.isdl.parser - package avrora.core.isdl.parser
avrora.gui - package avrora.gui
avrora.monitors - package avrora.monitors
avrora.sim - package avrora.sim
avrora.sim.clock - package avrora.sim.clock
avrora.sim.dbbc - package avrora.sim.dbbc
avrora.sim.energy - package avrora.sim.energy
avrora.sim.mcu - package avrora.sim.mcu
avrora.sim.platform - package avrora.sim.platform
avrora.sim.platform.sensors - package avrora.sim.platform.sensors
avrora.sim.radio - package avrora.sim.radio
avrora.sim.radio.freespace - package avrora.sim.radio.freespace
avrora.sim.types - package avrora.sim.types
avrora.sim.util - package avrora.sim.util
avrora.stack - package avrora.stack
avrora.stack.isea - package avrora.stack.isea
avrora.syntax - package avrora.syntax
avrora.syntax.atmel - package avrora.syntax.atmel
avrora.syntax.gas - package avrora.syntax.gas
avrora.syntax.objdump - package avrora.syntax.objdump
avrora.test - package avrora.test
avrora.test.probes - package avrora.test.probes
avrora.util - package avrora.util
avrora.util.help - package avrora.util.help
avrora.util.profiling - package avrora.util.profiling
awakeCycles - Variable in class avrora.monitors.SleepMonitor.Monitor

## B

BANNER - Static variable in class avrora.Main
BATTERY - Variable in class avrora.monitors.EnergyMonitor
BCLR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BCLR - Static variable in interface avrora.syntax.gas.GASParserConstants
BCLR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BIAS_PD - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
BIN_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
BIN_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BIN_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
BIN_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BIN_LITERAL - Static variable in interface avrora.test.probes.ProbeParserConstants
BLD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BLD - Static variable in interface avrora.syntax.gas.GASParserConstants
BLD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BOOLEAN_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
BOTTOM - Static variable in class avrora.sim.mcu.Timer16Bit
BOTTOM - Static variable in class avrora.sim.mcu.Timer8Bit
BPS - Static variable in class avrora.sim.platform.SerialForwarder
BRBC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRBC - Static variable in interface avrora.syntax.gas.GASParserConstants
BRBC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRBS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRBS - Static variable in interface avrora.syntax.gas.GASParserConstants
BRBS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRCC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRCC - Static variable in interface avrora.syntax.gas.GASParserConstants
BRCC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRCS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRCS - Static variable in interface avrora.syntax.gas.GASParserConstants
BRCS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BREAK - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BREAK - Static variable in interface avrora.syntax.gas.GASParserConstants
BREAK - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BREAKPOINTS - Variable in class avrora.monitors.InteractiveMonitor
BREQ - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BREQ - Static variable in interface avrora.syntax.gas.GASParserConstants
BREQ - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRGE - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRGE - Static variable in interface avrora.syntax.gas.GASParserConstants
BRGE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRHC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRHC - Static variable in interface avrora.syntax.gas.GASParserConstants
BRHC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRHS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRHS - Static variable in interface avrora.syntax.gas.GASParserConstants
BRHS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRID - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRID - Static variable in interface avrora.syntax.gas.GASParserConstants
BRID - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRIE - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRIE - Static variable in interface avrora.syntax.gas.GASParserConstants
BRIE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRLO - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRLO - Static variable in interface avrora.syntax.gas.GASParserConstants
BRLO - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRLT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRLT - Static variable in interface avrora.syntax.gas.GASParserConstants
BRLT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRMI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRMI - Static variable in interface avrora.syntax.gas.GASParserConstants
BRMI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRNE - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRNE - Static variable in interface avrora.syntax.gas.GASParserConstants
BRNE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRPL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRPL - Static variable in interface avrora.syntax.gas.GASParserConstants
BRPL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRSH - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRSH - Static variable in interface avrora.syntax.gas.GASParserConstants
BRSH - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRTC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRTC - Static variable in interface avrora.syntax.gas.GASParserConstants
BRTC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRTS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRTS - Static variable in interface avrora.syntax.gas.GASParserConstants
BRTS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRVC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRVC - Static variable in interface avrora.syntax.gas.GASParserConstants
BRVC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BRVS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BRVS - Static variable in interface avrora.syntax.gas.GASParserConstants
BRVS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BSET - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BSET - Static variable in interface avrora.syntax.gas.GASParserConstants
BSET - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BST - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BST - Static variable in interface avrora.syntax.gas.GASParserConstants
BST - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BYTE - Static variable in interface avrora.syntax.gas.GASParserConstants
BYTE2 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BYTE2 - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BYTE3 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BYTE3 - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
BYTE4 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
BYTE4 - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
B_AND - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
B_COMP - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
B_OR - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
B_XOR - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
BaseInterpreter - class avrora.sim.BaseInterpreter.
  The `BaseInterpreter` class represents a base class of the legacy interpreter and the generated interpreter(s) that stores the state of the executing program, e.g. registers and flags, etc.
BaseInterpreter(Simulator, Program, MicrocontrollerProperties) - Constructor for class avrora.sim.BaseInterpreter
  The constructor for the `BaseInterpreter` class initializes the node's flash, SRAM, general purpose registers, IO registers, and loads the program onto the flash.
BaseInterpreter.ErrorReporter - class avrora.sim.BaseInterpreter.ErrorReporter.
  The `ErrorReporter` class is used to report errors accessing segments.
BaseInterpreter.ErrorReporter() - Constructor for class avrora.sim.BaseInterpreter.ErrorReporter
BaseInterpreter.StateImpl - class avrora.sim.BaseInterpreter.StateImpl.
BaseInterpreter.StateImpl() - Constructor for class avrora.sim.BaseInterpreter.StateImpl
BeginToken() - Method in class avrora.core.isdl.parser.SimpleCharStream
BeginToken() - Method in class avrora.syntax.atmel.SimpleCharStream
BeginToken() - Method in class avrora.syntax.gas.SimpleCharStream
BeginToken() - Method in class avrora.syntax.objdump.SimpleCharStream
BeginToken() - Method in class avrora.test.probes.SimpleCharStream
BinOp() - Method in class avrora.syntax.objdump.ObjDumpParser
BitExpr - class avrora.core.isdl.ast.BitExpr.
  The `BitExpr` class represents an access of an individual bit within a value.
BitExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.BitExpr
  The constructor of the `BitExpr` class simply initializes the references to the expression and the bit.
BitRange(Expr) - Method in class avrora.core.isdl.parser.ISDLParser
BitRangeExpr - class avrora.core.isdl.ast.BitRangeExpr.
  The `BitRangeExpr` class represents an expression whose value is the result of extracting a range of the bits from another expression.
BitRangeExpr(Expr, Token, Token) - Constructor for class avrora.core.isdl.ast.BitRangeExpr
  The constructor of the `BitRangeExpr` class simply initializes the references to the operands of the bit range expression.
BitRangeExpr(Expr, int, int) - Constructor for class avrora.core.isdl.ast.BitRangeExpr
  The constructor of the `BitRangeExpr` class simply initializes the references to the operands of the bit range expression.
Block(List) - Method in class avrora.core.isdl.parser.ISDLParser
Body(ProbeTest) - Method in class avrora.test.probes.ProbeParser
BranchCounter - class avrora.sim.util.BranchCounter.
  The `BranchCounter` class is a profiling probe that can be inserted at a branch instruction to count the number of times the branch is taken and not taken.
BranchCounter() - Constructor for class avrora.sim.util.BranchCounter
ByteDirective() - Method in class avrora.syntax.atmel.AtmelParser
ByteDirective() - Method in class avrora.syntax.gas.GASParser
backup(int) - Method in class avrora.core.isdl.parser.SimpleCharStream
backup(int) - Method in class avrora.syntax.atmel.SimpleCharStream
backup(int) - Method in class avrora.syntax.gas.SimpleCharStream
backup(int) - Method in class avrora.syntax.objdump.SimpleCharStream
backup(int) - Method in class avrora.test.probes.SimpleCharStream
backwardEdges - Variable in class avrora.stack.StateTransitionGraph.StateInfo
backwardLink - Variable in class avrora.stack.StateTransitionGraph.Edge
badPc - Variable in class avrora.sim.InterpreterError.AddressOutOfBoundsException
badPc - Variable in class avrora.sim.InterpreterError.NoSuchInstructionException
badPc - Variable in class avrora.sim.InterpreterError.PCAlignmentException
badPc - Variable in class avrora.sim.InterpreterError.PCOutOfBoundsException
base - Variable in class avrora.sim.clock.ClockPrescaler
  The `base` field stores the cycle count of the underlying clock at the last time that this clock was reset.
begin(String) - Static method in class avrora.util.Status
  The `begin()` method prints a new line with the new status.
beginAddr - Variable in class avrora.sim.dbbc.DBBC.CodeBlock
beginAddr - Variable in class avrora.sim.dbbc.DBBC.CompiledBlock
beginColumn - Variable in class avrora.syntax.AbstractToken
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginColumn - Variable in class avrora.syntax.ProgramPoint
beginColumn - Variable in class avrora.test.probes.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class avrora.syntax.AbstractToken
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginLine - Variable in class avrora.test.probes.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
beginTransaction() - Method in class avrora.sim.util.TransactionalList
  The `beginTransaction()` method freezes this list so that further requests for updates (such as to add or remove objects) are queued until the transaction is completed, which is triggered by a called to `endTransaction()`.
biggestList - Variable in class avrora.core.isdl.gen.CodemapGenerator
binop(String, Expr, Expr, int) - Method in class avrora.core.isdl.gen.PrettyPrinter
bit - Variable in class avrora.core.isdl.ast.BitExpr
  The `bit` field stores a reference to an expression that when evaluated indicates which bit to read.
bit - Variable in class avrora.core.isdl.ast.MapBitAssignStmt
  The `bit` field stores a reference to the expression which is evaluated to yield the bit expr into the element of the map.
bit - Variable in class avrora.core.isdl.ast.VarBitAssignStmt
  The `bit` field stores a reference to the expression that represents the expr of the bit to assign to.
bit - Variable in class avrora.core.isdl.dep.StateUse.BitUse
bit(boolean) - Static method in class avrora.sim.GenInterpreter
bitCount(byte) - Static method in class avrora.util.Arithmetic
bitPeriod - Variable in class avrora.sim.radio.Channel
bitPeriod - Static variable in class avrora.sim.radio.freespace.FreeSpaceAir
bitPeriod2 - Static variable in class avrora.sim.radio.freespace.FreeSpaceAir
bitSize - Variable in class avrora.core.isdl.OperandDecl
bitToChar(char) - Static method in class avrora.stack.AbstractArithmetic
  The `toString()` method converts an 1-bit abstract value to a string representation.
bitWidth - Variable in class avrora.core.isdl.EncodingDecl
bits - Variable in class avrora.sim.radio.Channel
bitsOf(char) - Static method in class avrora.stack.AbstractArithmetic
  The `bitsOf()` method returns the lower 8 bits (the value bits) of the abstract value, ignoring the known bit mask.
blocks - Variable in class avrora.core.ControlFlowGraph
  The `blocks` field contains a reference to a map from `Integer` to `Block` this map is used to lookup the basic block that starts at a particular address.
bootPC - Variable in class avrora.sim.BaseInterpreter
branch(int) - Method in class avrora.stack.isea.ISEInterpreter
bufcolumn - Variable in class avrora.core.isdl.parser.SimpleCharStream
bufcolumn - Variable in class avrora.syntax.atmel.SimpleCharStream
bufcolumn - Variable in class avrora.syntax.gas.SimpleCharStream
bufcolumn - Variable in class avrora.syntax.objdump.SimpleCharStream
bufcolumn - Variable in class avrora.test.probes.SimpleCharStream
buffer - Variable in class avrora.core.isdl.parser.SimpleCharStream
buffer - Variable in class avrora.syntax.atmel.SimpleCharStream
buffer - Variable in class avrora.syntax.gas.SimpleCharStream
buffer - Variable in class avrora.syntax.objdump.SimpleCharStream
buffer - Variable in class avrora.test.probes.SimpleCharStream
bufline - Variable in class avrora.core.isdl.parser.SimpleCharStream
bufline - Variable in class avrora.syntax.atmel.SimpleCharStream
bufline - Variable in class avrora.syntax.gas.SimpleCharStream
bufline - Variable in class avrora.syntax.objdump.SimpleCharStream
bufline - Variable in class avrora.test.probes.SimpleCharStream
bufpos - Variable in class avrora.core.isdl.parser.SimpleCharStream
bufpos - Variable in class avrora.syntax.atmel.SimpleCharStream
bufpos - Variable in class avrora.syntax.gas.SimpleCharStream
bufpos - Variable in class avrora.syntax.objdump.SimpleCharStream
bufpos - Variable in class avrora.test.probes.SimpleCharStream
build(int, Operand[]) - Method in class avrora.core.Instr.IMMIMM_class
build(int, Operand[]) - Method in class avrora.core.Instr.IMMREG_class
build(int, Operand[]) - Method in class avrora.core.Instr.IMMWORD_class
build(int, Operand[]) - Method in class avrora.core.Instr.IMM_class
build(int, Operand[]) - Method in class avrora.core.Instr.NONE_class
build(int, Operand[]) - Method in class avrora.core.Instr.REGIMMREG_class
build(int, Operand[]) - Method in class avrora.core.Instr.REGIMM_class
build(int, Operand[]) - Method in class avrora.core.Instr.REGREGIMM_class
build(int, Operand[]) - Method in class avrora.core.Instr.REGREG_class
build(int, Operand[]) - Method in class avrora.core.Instr.REG_class
build(int, Operand[]) - Method in class avrora.core.Instr.WORD_class
build(int, Operand[]) - Method in interface avrora.core.InstrPrototype
  The `build()` method constructs a new `Instr` instance with the given operands, checking the operands against the constraints that are specific to each instruction.
build(int, Operand[]) - Method in class avrora.sim.CodeSegment.ProbedInstr
build(int, Operand[]) - Method in class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr
build() - Method in class avrora.syntax.Module
buildBimodalTTM(int, int, int[], int[]) - Static method in class avrora.sim.FiniteStateMachine
  The `buildBimodalTTM()` method builds a transition time matrix that corresponds to a finite state machine with two modes.
buildInterruptRange(boolean, String, String, int, int) - Method in class avrora.sim.mcu.ATMegaFamily
  The `buildInterruptRange()` method creates the IO registers and `MaskableInterrupt` instances corresponding to a complete range of interrupts.
buildPort(char) - Method in class avrora.sim.mcu.ATMegaFamily
  The `buildPort()` method builds the IO registers corresponding to a general purpose IO port.
buildReachableStateSpace() - Method in class avrora.stack.Analyzer
  The `buildReachableStateSpace()` method starts at the eden state of the analysis, maintaining a list of frontier states.
buildSparseTTM(int, int) - Static method in class avrora.sim.FiniteStateMachine
  The `buildSparseTTM()` method builds a transition time matrix that is uniform but sparse; the machine can transition from any state to any other state with the given transition time.
buildUniformTTM(int, int) - Static method in class avrora.sim.FiniteStateMachine
  The `buildUniformTTM()` method builds a transition time matrix that is uniform; the machine can transition from any state to any other state with the given transition time.
builder - Static variable in class avrora.sim.dbbc.CodeMap
byteAddress - Variable in class avrora.syntax.Item
bytePeriod - Static variable in class avrora.sim.radio.freespace.FreeSpaceAir
  The amount of cycles it takes for one byte to be sent.
bytePeriod - Static variable in class avrora.sim.radio.freespace.LocalAirImpl

## C

C - Variable in class avrora.sim.BaseInterpreter
CACHE_DIRECTORY - Variable in class avrora.sim.dbbc.DBBC
CACHE_REGISTERS - Variable in class avrora.sim.dbbc.DBBC
CAL - Static variable in class avrora.sim.radio.CC1000Radio
CALL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CALL - Static variable in interface avrora.syntax.gas.GASParserConstants
CALL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CALL_EDGE - Static variable in class avrora.stack.Analyzer
CAL_reg - Variable in class avrora.sim.radio.CC1000Radio
CBI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CBI - Static variable in interface avrora.syntax.gas.GASParserConstants
CBI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CBR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CBR - Static variable in interface avrora.syntax.gas.GASParserConstants
CBR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CC1000Radio - class avrora.sim.radio.CC1000Radio.
  The `CC1000Radio` class is a simulation of the CC1000 radio for use with avrora.
CC1000Radio(Microcontroller, long) - Constructor for class avrora.sim.radio.CC1000Radio
CC1000Radio.ATMegaController - class avrora.sim.radio.CC1000Radio.ATMegaController.
  A CC1000 Controller class for the ATMega microcontroller family.
CC1000Radio.ATMegaController.Transmit - class avrora.sim.radio.CC1000Radio.ATMegaController.Transmit.
  `Transmit` is an event that transmits a packet of data after a one bit period delay.
CC1000Radio.CALRegister - class avrora.sim.radio.CC1000Radio.CALRegister.
CC1000Radio.CALRegister.Calibrate - class avrora.sim.radio.CC1000Radio.CALRegister.Calibrate.
CC1000Radio.CALRegister.Calibrate() - Constructor for class avrora.sim.radio.CC1000Radio.CALRegister.Calibrate
CC1000Radio.CurrentRegister - class avrora.sim.radio.CC1000Radio.CurrentRegister.
  The `CurrentRegister` controls various currents running through the CC1000 wiring.
CC1000Radio.DummyRegister - class avrora.sim.radio.CC1000Radio.DummyRegister.
  The `DummyRegister` is a filler class for registers within the 7-bit address space of the radio registers, but do not actually exist/do anything in the real radio.
CC1000Radio.FSCTRLRegister - class avrora.sim.radio.CC1000Radio.FSCTRLRegister.
CC1000Radio.FrequencyRegister - class avrora.sim.radio.CC1000Radio.FrequencyRegister.
  A frequency register on the CC1000.
CC1000Radio.FrequencyRegister.FrequencySubRegister - class avrora.sim.radio.CC1000Radio.FrequencyRegister.FrequencySubRegister.
  One of the three sub-registers in the 24-bit frequency register.
CC1000Radio.FrequencySeparationRegister - class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister.
  The frequency separation register on the CC1000.
CC1000Radio.FrequencySeparationRegister.SubRegister - class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister.SubRegister.
  One of the two sub-registers in the 18-bit frequency separation register.
CC1000Radio.FrontEndRegister - class avrora.sim.radio.CC1000Radio.FrontEndRegister.
CC1000Radio.LockRegister - class avrora.sim.radio.CC1000Radio.LockRegister.
CC1000Radio.MainRegister - class avrora.sim.radio.CC1000Radio.MainRegister.
  The main register on the CC1000.
CC1000Radio.MatchRegister - class avrora.sim.radio.CC1000Radio.MatchRegister.
CC1000Radio.Modem0Register - class avrora.sim.radio.CC1000Radio.Modem0Register.
  The baud rate of the system is determined by values on the MODEM0 register.
CC1000Radio.Modem1Register - class avrora.sim.radio.CC1000Radio.Modem1Register.
CC1000Radio.Modem2Register - class avrora.sim.radio.CC1000Radio.Modem2Register.
CC1000Radio.PA_POWRegister - class avrora.sim.radio.CC1000Radio.PA_POWRegister.
CC1000Radio.PLLRegister - class avrora.sim.radio.CC1000Radio.PLLRegister.
CC1000Radio.PrescalerRegister - class avrora.sim.radio.CC1000Radio.PrescalerRegister.
CC1000Radio.RadioRegister - class avrora.sim.radio.CC1000Radio.RadioRegister.
  The `RadioRegister` is an abstract register grouping together registers on the CC1000 radio.
CC1000Radio.Receiver - class avrora.sim.radio.CC1000Radio.Receiver.
  TODO: determine if I will really need this for anything more than debugging.
CC1000Radio.Receiver() - Constructor for class avrora.sim.radio.CC1000Radio.Receiver
CC1000Radio.SerialConfigurationInterface - class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.
  Reads the three pins used in the three wire serial configuration interface.
CC1000Radio.SerialConfigurationInterface.PALEOutput - class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PALEOutput.
CC1000Radio.SerialConfigurationInterface.PALEOutput() - Constructor for class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PALEOutput
CC1000Radio.SerialConfigurationInterface.PCLKOutput - class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PCLKOutput.
  Clocking the PCLK pin is what drives the action of the configuration interface.
CC1000Radio.SerialConfigurationInterface.PCLKOutput() - Constructor for class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PCLKOutput
CC1000Radio.SerialConfigurationInterface.PDATAInput - class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAInput.
CC1000Radio.SerialConfigurationInterface.PDATAInput() - Constructor for class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAInput
CC1000Radio.SerialConfigurationInterface.PDATAOutput - class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAOutput.
CC1000Radio.SerialConfigurationInterface.PDATAOutput() - Constructor for class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAOutput
CC1000Radio.Transmitter - class avrora.sim.radio.CC1000Radio.Transmitter.
  This class is a state machine similar to `Receiver`, but for the transmitter on the radio.
CC1000Radio.Transmitter() - Constructor for class avrora.sim.radio.CC1000Radio.Transmitter
CFGAction - class avrora.actions.CFGAction.
  The `CFGAction` is an Avrora action that allows a control flow graph to be generated and output to the terminal or to a file.
CFGAction() - Constructor for class avrora.actions.CFGAction
  The default constructor of the `CFGAction` class simply creates an empty instance with the appropriate name and help string.
CHARACTER_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
CHARACTER_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CHARACTER_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
CHARACTER_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLASSES - Variable in class avrora.actions.ISDLAction
CLASSES - Variable in class avrora.monitors.ProfileMonitor
CLASSES - Static variable in class avrora.syntax.SimplifierError
CLC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLC - Static variable in interface avrora.syntax.gas.GASParserConstants
CLC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLH - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLH - Static variable in interface avrora.syntax.gas.GASParserConstants
CLH - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLI - Static variable in interface avrora.syntax.gas.GASParserConstants
CLI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLN - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLN - Static variable in interface avrora.syntax.gas.GASParserConstants
CLN - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLOCKSPEED - Variable in class avrora.sim.Simulation
CLR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLR - Static variable in interface avrora.syntax.gas.GASParserConstants
CLR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLS - Static variable in interface avrora.syntax.gas.GASParserConstants
CLS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLT - Static variable in interface avrora.syntax.gas.GASParserConstants
CLT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLV - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLV - Static variable in interface avrora.syntax.gas.GASParserConstants
CLV - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CLZ - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CLZ - Static variable in interface avrora.syntax.gas.GASParserConstants
CLZ - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CODEMAP - Variable in class avrora.actions.ISDLAction
COLLAPSE_PROCEDURES - Variable in class avrora.actions.CFGAction
COLORS - Static variable in class avrora.Main
COLOR_BLACK - Static variable in class avrora.util.Terminal
COLOR_BLUE - Static variable in class avrora.util.Terminal
COLOR_BRIGHT_BLUE - Static variable in class avrora.util.Terminal
COLOR_BRIGHT_CYAN - Static variable in class avrora.util.Terminal
COLOR_BRIGHT_GREEN - Static variable in class avrora.util.Terminal
COLOR_BRIGHT_RED - Static variable in class avrora.util.Terminal
COLOR_BROWN - Static variable in class avrora.util.Terminal
COLOR_CYAN - Static variable in class avrora.util.Terminal
COLOR_DARKGRAY - Static variable in class avrora.util.Terminal
COLOR_DEFAULT - Static variable in class avrora.util.Terminal
COLOR_GREEN - Static variable in class avrora.util.Terminal
COLOR_LIGHTGRAY - Static variable in class avrora.util.Terminal
COLOR_MAGENTA - Static variable in class avrora.util.Terminal
COLOR_PROCEDURES - Variable in class avrora.actions.CFGAction
COLOR_PURPLE - Static variable in class avrora.util.Terminal
COLOR_RED - Static variable in class avrora.util.Terminal
COLOR_WHITE - Static variable in class avrora.util.Terminal
COLOR_YELLOW - Static variable in class avrora.util.Terminal
COM - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
COM - Static variable in interface avrora.syntax.gas.GASParserConstants
COM - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
COMMA - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
COMMA - Static variable in class avrora.util.StringUtil
COMMA_SPACE - Static variable in class avrora.util.StringUtil
COMPARATOR - Static variable in class avrora.core.ControlFlowGraph
  The `COMPARATOR` field stores a comparator that is used in sorting basic blocks by program order.
COMPARATOR - Static variable in class avrora.util.Option
  The `OptionComparator` is an implementation of the `java.util.Comparator` interface that is used to sort options alphabetically for printing in the help system.
COMPARATOR - Static variable in class avrora.util.help.HelpCategory
COMn0 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
COMn1 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
CONFIGFILE - Static variable in class avrora.Main
CONSTANT_PROPAGATION - Variable in class avrora.sim.dbbc.DBBC
CORE_PD - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
CP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CP - Static variable in interface avrora.syntax.gas.GASParserConstants
CP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CPC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CPC - Static variable in interface avrora.syntax.gas.GASParserConstants
CPC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CPI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CPI - Static variable in interface avrora.syntax.gas.GASParserConstants
CPI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CPSE - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
CPSE - Static variable in interface avrora.syntax.gas.GASParserConstants
CPSE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
CSn0 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
CSn1 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
CSn2 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
CURRENT - Static variable in class avrora.sim.radio.CC1000Radio
CURRENT_reg - Variable in class avrora.sim.radio.CC1000Radio
CYCLES - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
CYCLES - Variable in class avrora.monitors.ProfileMonitor
CallExpr - class avrora.core.isdl.ast.CallExpr.
  The `CallExpr` class represents a subroutine call within the IR.
CallExpr(Token, List) - Constructor for class avrora.core.isdl.ast.CallExpr
  The constructor of the `CallExpr` class simply initializes the references to the subroutine name and arguments.
CallExpr(String, List) - Constructor for class avrora.core.isdl.ast.CallExpr
  The constructor of the `CallExpr` class simply initializes the references to the subroutine name and arguments.
CallExpr() - Method in class avrora.core.isdl.parser.ISDLParser
CallMonitor - class avrora.monitors.CallMonitor.
  The `CallMonitor` class implements a monitor that is capable of tracing the call/return behavior of a program while it executes.
CallMonitor() - Constructor for class avrora.monitors.CallMonitor
  The constructor for the `CallMonitor` class simply initializes the help for this class.
CallStmt - class avrora.core.isdl.ast.CallStmt.
  The `CallStmt` class represents a call to a subroutine that does not produce a value.
CallStmt(Token, List) - Constructor for class avrora.core.isdl.ast.CallStmt
  The constructor of the `CallStmt` class simply initializes the references to the subroutine name and arguments.
CallStmt(String, List) - Constructor for class avrora.core.isdl.ast.CallStmt
  The constructor of the `CallStmt` class simply initializes the references to the subroutine name and arguments.
CallStmt() - Method in class avrora.core.isdl.parser.ISDLParser
Canonicalizer - class avrora.core.isdl.gen.Canonicalizer.
Canonicalizer() - Constructor for class avrora.core.isdl.gen.Canonicalizer
Channel - class avrora.sim.radio.Channel.
  The `Channel` class implements a serial channel that represents a communication channel where bits are sent one by one.
Channel(int, long, boolean) - Constructor for class avrora.sim.radio.Channel
ClassGenerator - class avrora.core.isdl.gen.ClassGenerator.
  The `ClassGenerator` class generates a set of classes that represent instructions in an architecture.
ClassGenerator(Architecture, Printer) - Constructor for class avrora.core.isdl.gen.ClassGenerator
ClassMap - class avrora.util.ClassMap.
  The `ClassMap` is a class that maps short names (i.e. short, lower case strings) to java classes and can instantiate them.
ClassMap(String, Class) - Constructor for class avrora.util.ClassMap
  The constructor for the `ClassMap` class creates a new class map with the specified type, which maps strings to instances of the specified class.
ClassMapValueItem - class avrora.util.help.ClassMapValueItem.
  The `ClassMapValueItem` is a help item representing one possible value for an option, where the value of the option is used to access a class map.
ClassMapValueItem(int, String, String, ClassMap) - Constructor for class avrora.util.help.ClassMapValueItem
  The constructor for the `ClassMapValueItem` class creates a new instance of a help item for the specified option and value.
Clock - class avrora.sim.clock.Clock.
  The `Clock` class represents a clock within the simulation.
Clock(String, long) - Constructor for class avrora.sim.clock.Clock
ClockDomain - class avrora.sim.clock.ClockDomain.
  The `ClockDomain` class represents a collection of clocks for a device or platform, including the main clock used for the microcontroller.
ClockDomain(long) - Constructor for class avrora.sim.clock.ClockDomain
  The constructor for the `ClockDomain` class constructs the main clock (from which all other clocks are derived).
ClockPrescaler - class avrora.sim.clock.ClockPrescaler.
  The `ClockPrescaler` class represents a clock that is another clock scaled appropriately; e.g. 8x slower.
ClockPrescaler(String, Clock, int) - Constructor for class avrora.sim.clock.ClockPrescaler
  The constructor of the `ClockPrescaler` creates a new clock that is an integer multiple slower than the clock that it is derived from.
CodeMap - class avrora.sim.dbbc.CodeMap.
CodeMap() - Constructor for class avrora.sim.dbbc.CodeMap
CodeMap.CodeBuilder - class avrora.sim.dbbc.CodeMap.CodeBuilder.
CodeMap.CodeBuilder() - Constructor for class avrora.sim.dbbc.CodeMap.CodeBuilder
CodeRebuilder - interface avrora.core.isdl.ast.CodeRebuilder.
  The `CodeVisitor` interface represents a visitor that is more specific than the `ExprVisitor` visitor, in that it contains visit methods for every type of arithmetic and logical operation in the IR.
CodeRebuilder.DepthFirst - class avrora.core.isdl.ast.CodeRebuilder.DepthFirst.
  The `DepthFirst` class is a base implementation of the `CodeVisitor` interface that visits the tree in depth-first order.
CodeRebuilder.DepthFirst() - Constructor for class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
CodeRegion - class avrora.core.isdl.CodeRegion.
  The `CodeRegion` class represents a piece of code that has external inputs.
CodeRegion(List, List) - Constructor for class avrora.core.isdl.CodeRegion
CodeRegion.Operand - class avrora.core.isdl.CodeRegion.Operand.
CodeRegion.Operand(Token, Token) - Constructor for class avrora.core.isdl.CodeRegion.Operand
CodeSegment - class avrora.sim.CodeSegment.
  The `CodeSegment` class represents a segment of memory that stores executable code.
CodeSegment(String, int, BaseInterpreter, Segment.ErrorReporter) - Constructor for class avrora.sim.CodeSegment
  The constructor for the `CodeSegment` class creates a new code segment, complete with binary and instruction representations.
CodeSegment.CodeSharer - interface avrora.sim.CodeSegment.CodeSharer.
  The `CodeSharer` interface is used to allow sharing of the underlying array representing the code.
CodeSegment.DefaultFactory - class avrora.sim.CodeSegment.DefaultFactory.
  The `DefaultFactory` class represents a factory capable of creating a simple code segment that is not reprogrammable.
CodeSegment.DefaultFactory(int) - Constructor for class avrora.sim.CodeSegment.DefaultFactory
CodeSegment.Factory - interface avrora.sim.CodeSegment.Factory.
  The `CodeSegment.Factory` class is used to create a new code segment for a new interpreter.
CodeSegment.ProbedInstr - class avrora.sim.CodeSegment.ProbedInstr.
  The ProbedInstr class represents a wrapper around an instruction in the program that executes the probes before executing the instruction and after the instruction.
CodeSegment.ProbedInstr(Instr, int) - Constructor for class avrora.sim.CodeSegment.ProbedInstr
CodeSegment.ProbedInstr(Instr, CodeSegment.ProbedInstr) - Constructor for class avrora.sim.CodeSegment.ProbedInstr
CodeVisitor - interface avrora.core.isdl.ast.CodeVisitor.
  The `CodeVisitor` interface represents a visitor that is more specific than the `ExprVisitor` visitor, in that it contains visit methods for every type of arithmetic and logical operation in the IR.
CodeVisitor.Default - class avrora.core.isdl.ast.CodeVisitor.Default.
  The `DepthFirst` class is a base implementation of the `CodeVisitor` interface that visits the tree in depth-first order.
CodeVisitor.Default() - Constructor for class avrora.core.isdl.ast.CodeVisitor.Default
CodeVisitor.DepthFirst - class avrora.core.isdl.ast.CodeVisitor.DepthFirst.
  The `DepthFirst` class is a base implementation of the `CodeVisitor` interface that visits the tree in depth-first order.
CodeVisitor.DepthFirst() - Constructor for class avrora.core.isdl.ast.CodeVisitor.DepthFirst
CodemapGenerator - class avrora.core.isdl.gen.CodemapGenerator.
CodemapGenerator(Architecture, Printer) - Constructor for class avrora.core.isdl.gen.CodemapGenerator
CodemapGenerator.ExprGenerator - class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator.
CodemapGenerator.ExprGenerator() - Constructor for class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
CodemapGenerator.StmtGenerator - class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator.
CodemapGenerator.StmtGenerator() - Constructor for class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
CommentStmt - class avrora.core.isdl.ast.CommentStmt.
CommentStmt(String) - Constructor for class avrora.core.isdl.ast.CommentStmt
Cond_And_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
Cond_Or_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
Cond_Xor_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
Const() - Method in class avrora.syntax.atmel.AtmelParser
Const() - Method in class avrora.syntax.gas.GASParser
Const() - Method in class avrora.syntax.objdump.ObjDumpParser
ConstantExpected(SyntacticOperand) - Method in class avrora.syntax.AVRErrorReporter
ConstantOutOfRange(SyntacticOperand, int, String) - Method in class avrora.syntax.AVRErrorReporter
ConstantPropagator - class avrora.core.isdl.gen.ConstantPropagator.
ConstantPropagator() - Constructor for class avrora.core.isdl.gen.ConstantPropagator
ConstantPropagator.ConstantEnvironment - class avrora.core.isdl.gen.ConstantPropagator.ConstantEnvironment.
Context - interface avrora.syntax.Context.
  The `Context` interface represents a context in which an expression in a program should be evaluated.
ControlFlowGraph - class avrora.core.ControlFlowGraph.
  The `ControlFlowGraph` represents a control flow graph for an entire program, including all basic blocks and all procedures.
ControlFlowGraph.Block - class avrora.core.ControlFlowGraph.Block.
  The `Block` class represents a basic block of code within the program.
ControlFlowGraph.Edge - class avrora.core.ControlFlowGraph.Edge.
  The `Edge` represents an edge leaving a basic block and (optionally) arriving at another, known basic block.
Conversion(Expr) - Method in class avrora.core.isdl.parser.ISDLParser
ConversionExpr - class avrora.core.isdl.ast.ConversionExpr.
  The `MapExpr` class represents an expression that is an access of an element within a map.
ConversionExpr(Expr, Token) - Constructor for class avrora.core.isdl.ast.ConversionExpr
  The constructor of the `MapExpr` class initializes the publicly accessable fields that represent the members of this expression
ConversionExpr(Expr, String) - Constructor for class avrora.core.isdl.ast.ConversionExpr
  The constructor of the `MapExpr` class initializes the publicly accessable fields that represent the members of this expression
Counter - class avrora.sim.util.Counter.
  The `Counter` class is a utility for profiling programs.
Counter() - Constructor for class avrora.sim.util.Counter
Counter - class avrora.util.profiling.Counter.
  This class implements a simple counter as a data item.
Counter(String) - Constructor for class avrora.util.profiling.Counter
Counter(String, int) - Constructor for class avrora.util.profiling.Counter
Cycles() - Method in class avrora.core.isdl.parser.ISDLParser
cache - Variable in class avrora.stack.isea.ISEInterpreter
call(MutableState, int) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `call()` method is called by the abstract interpreter when it encounters a call instruction within the program.
call(MutableState, int) - Method in interface avrora.stack.AnalyzerPolicy
  The `call()` method is called by the abstract interpreter when it encounters a call instruction within the program.
canon(char) - Static method in class avrora.stack.AbstractArithmetic
  The `canon()` method canonicalizes an abstract value.
canon(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `canon()` method canonicalizes an abstract value.
caseSensitive - Variable in class avrora.core.Program
  The `caseSensitive` field controls whether label searching is case sensitive or not.
caseSensitivity - Variable in class avrora.syntax.Module
ccprobe - Variable in class avrora.monitors.ProfileMonitor.Monitor
ceiling(char) - Static method in class avrora.stack.AbstractArithmetic
  The `ceiling()` function computes the concrete value with all unknown bits set to one.
ceiling(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `ceiling()` function computes the concrete value with all unknown bits set to one.
cfg - Variable in class avrora.actions.CFGAction
cfg - Variable in class avrora.sim.dbbc.DBBC
cfg - Variable in class avrora.stack.isea.ISEAnalyzer
chalkboardAndBar() - Method in class avrora.gui.GraphEvents
  Returns a panel which can be displayed that contains the graph numbers panel and a horz scrollbar at the bottom that makes changes viewing area easy
chalkboardAndBar() - Method in class avrora.gui.GraphNumbers
  Returns a panel which can be displayed that contains the graph numbers panel and a horz scrollbar at the bottom that makes changes viewing area easy
channel - Variable in class avrora.sim.platform.sensors.LightSensor
channelOffset(long) - Method in class avrora.sim.radio.Channel
channelValues - Variable in class avrora.sim.radio.Channel
channelWritten - Variable in class avrora.sim.radio.Channel
checkAddress(int) - Method in class avrora.core.Program
  The `checkAddress()` method simply checks an address against the bounds of the program and throws an error if the address is not within the bounds.
checkAndDispatch(ActionEvent) - Method in class avrora.gui.ManageMonitors
  This function checks if an event was caused by this panel.
checkAndDispatch(ActionEvent) - Method in class avrora.gui.ManageSimInput
  This function sees if an event was caused by this panel.
checkAndDispatch(ActionEvent) - Method in class avrora.gui.ManageSimTime
  This function checks to see if an event was caused by this panel.
checkAndDispatch(ActionEvent) - Method in class avrora.gui.SimMenuBar
  This checks to see if the event was caused by a widget in this class.
checkFileExists(String) - Static method in class avrora.Main
checkFilesExist(String[]) - Static method in class avrora.Main
checkWaiters() - Method in class avrora.sim.clock.IntervalSynchronizer
classMap - Variable in class avrora.util.ClassMap
  The `classMap` field is a hash map that maps a string to a Java class.
className - Variable in class avrora.core.isdl.InstrDecl
className(String) - Method in class avrora.sim.dbbc.DBBC
clazz - Variable in class avrora.util.ClassMap
  The `clazz` field stores a reference to the Java class of which the objects stored in this map are instances of.
cleanCode(String) - Method in class avrora.syntax.objdump.ObjDumpReformatter
clear() - Method in class avrora.gui.MonitorPanel
  This function should be called between different simulations in order to clear all the old data
clearBit(byte, int) - Static method in class avrora.util.Arithmetic
clock - Variable in class avrora.sim.BaseInterpreter
  The `clock` field stores a reference to the main clock of the simulator.
clock - Variable in class avrora.sim.FiniteStateMachine
clock - Variable in class avrora.sim.Simulator
  The `clock` field stores a reference to the `MainClock` instance that tracks the clock cycles that have passed for this simulator.
clock - Variable in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
clockDomain - Variable in class avrora.sim.mcu.AtmelMicrocontroller
clockMap - Variable in class avrora.sim.clock.ClockDomain
close() - Method in class avrora.util.SectionFile
codeBlockMap - Variable in class avrora.sim.dbbc.DBBC
codeSegmentFactory - Variable in class avrora.sim.mcu.MicrocontrollerProperties
codeSharer - Variable in class avrora.sim.CodeSegment
color - Variable in class avrora.sim.platform.LED
colorNum - Variable in class avrora.sim.platform.PinWire
colornum - Variable in class avrora.sim.platform.LED
column - Variable in class avrora.core.isdl.parser.SimpleCharStream
column - Variable in class avrora.syntax.atmel.SimpleCharStream
column - Variable in class avrora.syntax.gas.SimpleCharStream
column - Variable in class avrora.syntax.objdump.SimpleCharStream
column - Variable in class avrora.test.probes.SimpleCharStream
commalist(List) - Static method in class avrora.util.StringUtil
commalist(Object, Object) - Static method in class avrora.util.StringUtil
commalist(Object, Object, Object) - Static method in class avrora.util.StringUtil
commalist(Object, Object, Object, Object) - Static method in class avrora.util.StringUtil
comment - Variable in class avrora.core.isdl.ast.CommentStmt
  The `name` field stores a reference to the name of the local.
commit - Variable in class avrora.Version
  The `commit` field stores the commit number (i.e. the number of code revisions committed to CVS since the last release).
commit() - Method in class avrora.sim.BaseInterpreter
  The `commit()` method is used internally to commit the results of the instructiobn just executed.
commonMask(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `commonMask()` method computes the intersection of the known bit masks of two abstract values.
commonMask(char, char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `commonMask()` method computes the intersection of the known bit masks of three abstract values.
compareMatch() - Method in class avrora.sim.mcu.Timer8Bit
compareTo(Object) - Method in class avrora.sim.radio.Radio.Transmission
compileGeneratedCode(File) - Method in class avrora.sim.dbbc.DBBC
compileProgram() - Method in class avrora.sim.dbbc.DBBCInterpreter
compiledCodeMap - Variable in class avrora.sim.dbbc.DBBC
compiler - Variable in class avrora.sim.dbbc.DBBCInterpreter.Factory
computeHashCode() - Method in class avrora.stack.AbstractState
computeNextStates(StateCache.State) - Method in class avrora.stack.AbstractInterpreter
  The `computeNextStates()` method computes the possible next states that follow the given immutable old state and then will push them to the `AnalyzerPolicy` instance that was passed in the constructor to this interpreter instance.
cond - Variable in class avrora.core.isdl.ast.IfStmt
  The `cond` field stores a reference to the expression that is evaluated as the condition determining which branch is executed.
condition - Variable in class avrora.core.isdl.EncodingDecl
condition - Variable in class avrora.sim.clock.IntervalSynchronizer
connect(Microcontroller.Pin.Output) - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
connect(Microcontroller.Pin.Input) - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
connect(Microcontroller.Pin.Input) - Method in interface avrora.sim.mcu.Microcontroller.Pin
  The `connect()` method will connect this pin to the specified input.
connect(Microcontroller.Pin.Output) - Method in interface avrora.sim.mcu.Microcontroller.Pin
  The `connect()` method will connect this pin to the specified output.
connect(SPIDevice) - Method in class avrora.sim.mcu.SPI
connect(SPIDevice) - Method in interface avrora.sim.mcu.SPIDevice
  The `connect()` method connects this SPI device to the specified SPIDevice.
connect(USART.USARTDevice) - Method in class avrora.sim.mcu.USART
connect(SPIDevice) - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
connectADCInput(ADC.ADCInput, int) - Method in class avrora.sim.mcu.ADC
  The `connectADCInput()` method connects an `ADCInput` object to the specified input port on the ADC chip.
connectedDevice - Variable in class avrora.sim.mcu.USART
constants - Variable in class avrora.syntax.Module
construct(Simulator) - Method in class avrora.gui.SingleNodeMonitor.SingleNodePanel
construct(Simulation, Simulation.Node, Simulator) - Method in class avrora.gui.SingleNodeMonitor
  This is called at the beginning of the simulation to physically create the nodes
construct(Simulator) - Method in class avrora.gui.VisualStackMonitor.SPMon
construct(Simulation, Simulation.Node, Simulator) - Method in interface avrora.sim.Simulation.Monitor
consumer - Variable in class avrora.sim.energy.EnergyControl.Instance
contains(Register) - Method in class avrora.core.Register.Set
  The `contains()` method tests for membership.
contains(Object) - Method in class avrora.stack.StateCache.Set
containsAll(StateCache.Set) - Method in class avrora.stack.StateCache.Set
contents - Variable in class avrora.core.Register.Set
  The `contents` field stores a string that represents a summary of the registers that are in this set.
controller - Variable in class avrora.sim.radio.CC1000Radio
copy() - Method in class avrora.stack.AbstractState
  The `copy()` method returns a deep copy of this state.
copy() - Method in class avrora.stack.isea.ISEAbstractState.Element
copy() - Method in class avrora.stack.isea.ISEAbstractState
couldBeEqual(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `couldBeEqual()` method performs a "fuzzy" equality test between two abstract values.
couldBeZero(char) - Static method in class avrora.stack.AbstractArithmetic
  The `couldBeZero` method performs a "fuzzy" equality test against zero for an abstract value.
couldBeZero(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `couldBeZero()` method performs a "fuzzy" equality test against zero for two abstract values.
count - Variable in class avrora.monitors.ProfileMonitor.Monitor.CCProbe
count - Variable in class avrora.monitors.ProfileMonitor.Monitor.CProbe
count - Variable in class avrora.monitors.TraceMonitor.Monitor
count - Variable in class avrora.sim.clock.DeltaQueue
  The `count` field stores the total number of cycles that this queue has been advanced, i.e.
count - Variable in class avrora.sim.util.Counter
  The `count` field stores the accumulation of all events received by this counter.
count - Variable in class avrora.util.profiling.Counter
countMaximum - Variable in class avrora.util.profiling.MinMaxMean
countMinimum - Variable in class avrora.util.profiling.MinMaxMean
cprobe - Variable in class avrora.monitors.ProfileMonitor.Monitor
createEnvironment() - Method in class avrora.core.isdl.gen.ConstantPropagator
createFileSelectionDialog() - Method in class avrora.gui.ManageSimInput
  This creates the dialog box that adds files ("nodes") to the simulator
createImageIcon(String) - Static method in class avrora.gui.AvroraGui
  Returns an ImageIcon, or null if the path was invalid.
createManageMonitors() - Static method in class avrora.gui.ManageMonitors
  This should be called during the GUI init in order to have "slots" for the various dialog boxes.
createManageSimInput() - Static method in class avrora.gui.ManageSimInput
  This is the "constructor" for this class.
createManageSimTime() - Static method in class avrora.gui.ManageSimTime
  This is a "constructor" - it inits all internal fields It is generally called by AvroraGui when the GUI is being created
createManageTopology() - Static method in class avrora.gui.ManageTopology
  This is the "constructor" for this class.
createMonitorPanel(String) - Method in class avrora.gui.AvroraGui
  This function creates an options panel and a display panel for a non-global visual monitor.
createMonitorsDialog() - Method in class avrora.gui.ManageMonitors
  This creates a dialog box that displays a choice of monitors to add.
createNode(PlatformFactory, LoadableProgram) - Method in class avrora.sim.Simulation
  The `createNode()` method creates a new node in the simulation with the specified platform, with the specified program loaded onto it.
createSetOptionsDialog() - Method in class avrora.gui.ManageSimInput
  This creates the dialog box that asks for sim options Called by SimMenuBar
createShare(String) - Method in class avrora.util.profiling.Proportion
  Register a counter object with this proportion.
createSimMenuBar() - Static method in class avrora.gui.SimMenuBar
  This functions as the constructor for this class.
createSimpleAirTable() - Method in class avrora.gui.ManageTopology
  This function will create a table of all the nodes currently registered.
cumulname - Variable in class avrora.util.profiling.MinMaxMean
curChar - Variable in class avrora.core.isdl.parser.ISDLParserTokenManager
curChar - Variable in class avrora.syntax.atmel.AtmelParserTokenManager
curChar - Variable in class avrora.syntax.gas.GASParserTokenManager
curChar - Variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
curChar - Variable in class avrora.test.probes.ProbeParserTokenManager
curState - Variable in class avrora.sim.FiniteStateMachine
currentFrequencyRegister - Variable in class avrora.sim.radio.CC1000Radio
currentToken - Variable in class avrora.core.isdl.parser.ParseException
  This is the last token that has been consumed successfully.
currentToken - Variable in class avrora.syntax.AbstractParseException
  This is the last token that has been consumed successfully.
currentToken - Variable in class avrora.test.probes.ParseException
  This is the last token that has been consumed successfully.
cycles - Variable in class avrora.core.InstrProperties
  The `cycles` field stores the minimum number of cycles required to invoke this instruction.
cycles - Variable in class avrora.core.isdl.InstrDecl
cycles - Variable in class avrora.monitors.EnergyProfiler.EnergyProfile
  `cycles`: number of cycles spend in this procedure
cyclesConsumed - Variable in class avrora.sim.BaseInterpreter
  The `cyclesConsumed` field stores the number of cycles consumed in doing a part of the simulation (e.g. executing an instruction or processing an interrupt).
cyclesToMillis(long) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `cyclesToMillis()` method converts the specified number of cycles to a time quantity in milliseconds.
cyclesToMillis(long) - Method in interface avrora.sim.mcu.Microcontroller
  The `cyclesToMillis()` method converts the specified number of cycles to a time quantity in milliseconds.

## D

DATA - Static variable in interface avrora.syntax.gas.GASParserConstants
DAYS - Static variable in class avrora.util.StringUtil
DAYSECS - Static variable in class avrora.util.StringUtil
DBBC - class avrora.sim.dbbc.DBBC.
DBBC(Program, Options) - Constructor for class avrora.sim.dbbc.DBBC
DBBC.CodeBlock - class avrora.sim.dbbc.DBBC.CodeBlock.
DBBC.CodeBlock(int, LinkedList, int) - Constructor for class avrora.sim.dbbc.DBBC.CodeBlock
DBBC.CodeGenerator - class avrora.sim.dbbc.DBBC.CodeGenerator.
DBBC.CompiledBlock - class avrora.sim.dbbc.DBBC.CompiledBlock.
DBBC.CompiledBlock(int, int) - Constructor for class avrora.sim.dbbc.DBBC.CompiledBlock
DBBC.DBBCClassLoader - class avrora.sim.dbbc.DBBC.DBBCClassLoader.
DBBC.DBBCClassLoader() - Constructor for class avrora.sim.dbbc.DBBC.DBBCClassLoader
DBBCAction - class avrora.actions.DBBCAction.
  The `DBBCAction` class contains a simple test action where a program can be loaded and compiled to Java source by the DBBC and that source is output on the console.
DBBCAction() - Constructor for class avrora.actions.DBBCAction
DBBCInterpreter - class avrora.sim.dbbc.DBBCInterpreter.
DBBCInterpreter(DBBC, Simulator, Program, MicrocontrollerProperties) - Constructor for class avrora.sim.dbbc.DBBCInterpreter
DBBCInterpreter.Factory - class avrora.sim.dbbc.DBBCInterpreter.Factory.
DBBCInterpreter.Factory(DBBC) - Constructor for class avrora.sim.dbbc.DBBCInterpreter.Factory
DDRA - Static variable in interface avrora.stack.IORegisterConstants
DDRB - Static variable in interface avrora.stack.IORegisterConstants
DDRC - Static variable in interface avrora.stack.IORegisterConstants
DDRD - Static variable in interface avrora.stack.IORegisterConstants
DDRE - Static variable in interface avrora.stack.IORegisterConstants
DDRF - Static variable in interface avrora.stack.IORegisterConstants
DDRG - Static variable in interface avrora.stack.IORegisterConstants
DEAD_CODE_ELIMINATION - Variable in class avrora.sim.dbbc.DBBC
DEC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
DEC - Static variable in interface avrora.syntax.gas.GASParserConstants
DEC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
DECIMAL_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
DECIMAL_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
DECIMAL_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
DECIMAL_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
DECIMAL_LITERAL - Static variable in interface avrora.test.probes.ProbeParserConstants
DEFAULT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
DEFAULT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
DEFAULT - Static variable in interface avrora.syntax.gas.GASParserConstants
DEFAULT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
DEFAULT - Static variable in interface avrora.test.probes.ProbeParserConstants
DEFAULT_VALUE - Static variable in class avrora.sim.CodeSegment
  The `DEFAULT_VALUE` field stores the default value that is used to initialize the flash memory.
DENOM - Static variable in class avrora.util.StringUtil
DETAIL - Variable in class avrora.actions.TestAction
DF_STATUS_COMPARE - Static variable in class avrora.sim.platform.ExternalFlash
DF_STATUS_READY - Static variable in class avrora.sim.platform.ExternalFlash
DF_STATUS_REGISTER_DENSITY - Static variable in class avrora.sim.platform.ExternalFlash
DF_TBE - Static variable in class avrora.sim.platform.ExternalFlash
DF_TEP - Static variable in class avrora.sim.platform.ExternalFlash
DF_TP - Static variable in class avrora.sim.platform.ExternalFlash
DF_TPE - Static variable in class avrora.sim.platform.ExternalFlash
DF_TXFR - Static variable in class avrora.sim.platform.ExternalFlash
DIGIT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
DIGIT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
DIGIT - Static variable in interface avrora.syntax.gas.GASParserConstants
DIGIT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
DIGIT - Static variable in interface avrora.test.probes.ProbeParserConstants
DISASSEM - Variable in class avrora.actions.ISDLAction
DISCARD - Variable in class avrora.monitors.PacketMonitor
DISTEST - Variable in class avrora.actions.ISDLAction
DIV - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
DOLLAR - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
DOT_IDENTIFIER - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
DUMP_STATE_SPACE - Variable in class avrora.actions.AnalyzeStackAction
Data() - Method in class avrora.syntax.atmel.AtmelParser
Data() - Method in class avrora.syntax.gas.GASParser
Data() - Method in class avrora.syntax.objdump.ObjDumpParser
DataCannotBeInSegment(String, ASTNode) - Method in class avrora.syntax.AVRErrorReporter
DataDirective() - Method in class avrora.syntax.atmel.AtmelParser
DataDirective() - Method in class avrora.syntax.gas.GASParser
DataItem - class avrora.util.profiling.DataItem.
  This class represents a data item that can be placed inside a database.
DataItem() - Constructor for class avrora.util.profiling.DataItem
DataList() - Method in class avrora.syntax.atmel.AtmelParser
DataList() - Method in class avrora.syntax.gas.GASParser
Databank - class avrora.util.profiling.Databank.
  The Databank class is a static class that collects Database objects and generates a report on all of them when the report() method is called.
Databank() - Constructor for class avrora.util.profiling.Databank
Database - class avrora.util.profiling.Database.
Database() - Constructor for class avrora.util.profiling.Database
DatabaseVisitor - class avrora.util.profiling.DatabaseVisitor.
DatabaseVisitor() - Constructor for class avrora.util.profiling.DatabaseVisitor
DeadCodeEliminator - class avrora.core.isdl.gen.DeadCodeEliminator.
DeadCodeEliminator(Set) - Constructor for class avrora.core.isdl.gen.DeadCodeEliminator
DeadCodeEliminator.DefUseEnvironment - class avrora.core.isdl.gen.DeadCodeEliminator.DefUseEnvironment.
DebugStream - class avrora.gui.DebugStream.
  This class acts as a bridge that remaps console output to the debug window of the GUI.
DebugStream(AvroraGui) - Constructor for class avrora.gui.DebugStream
DeclStmt - class avrora.core.isdl.ast.DeclStmt.
  The `DeclStmt` represents a declaration of a local, temporary value in the IR.
DeclStmt(Token, Token, Expr) - Constructor for class avrora.core.isdl.ast.DeclStmt
  The constructor of the `DeclStmt` class initializes the references to the name, type, and initial value of the declared local.
DeclStmt(String, Token, Expr) - Constructor for class avrora.core.isdl.ast.DeclStmt
  The constructor of the `DeclStmt` class initializes the references to the name, type, and initial value of the declared local.
DeclStmt(String, String, Expr) - Constructor for class avrora.core.isdl.ast.DeclStmt
  The constructor of the `DeclStmt` class initializes the references to the name, type, and initial value of the declared local.
Declaration(ProbeTest) - Method in class avrora.test.probes.ProbeParser
DefDirective() - Method in class avrora.syntax.atmel.AtmelParser
DefaultPlatform - class avrora.sim.platform.DefaultPlatform.
  The `DefaultPlatform` class represents the simplest type of platform, a microcontroller with no externally connected devices.
DefaultPlatform.Factory - class avrora.sim.platform.DefaultPlatform.Factory.
  The `DefaultPlatform.Factory` class implements a factory for a default platform.
DefaultPlatform.Factory(long, long, MicrocontrollerFactory) - Constructor for class avrora.sim.platform.DefaultPlatform.Factory
  The constructor for the `DefaultPlatform.Factory` class accepts three parameters: the speed of the main clock, the speed of the external clock, and the microcontroller factory for this platform
Defaults - class avrora.Defaults.
  The `Defaults` class contains the default mappings for microcontrollers, actions, input formats, constants, etc.
Defaults() - Constructor for class avrora.Defaults
Defaults.AutoProgramReader - class avrora.Defaults.AutoProgramReader.
Defaults.AutoProgramReader() - Constructor for class avrora.Defaults.AutoProgramReader
DeltaQueue - class avrora.sim.clock.DeltaQueue.
  The `DeltaQueue` class implements an amortized constant time delta-queue for processing of scheduled events.
DeltaQueue() - Constructor for class avrora.sim.clock.DeltaQueue
DependencyAnalyzer - class avrora.core.isdl.dep.DependencyAnalyzer.
DependencyAnalyzer() - Constructor for class avrora.core.isdl.dep.DependencyAnalyzer
DerivedClock - class avrora.sim.clock.DerivedClock.
  The `DerivedClock` class represents a clock that is derived from another clock; i.e. the derived clock runs slower but is synchronized with the clock that it is derived from.
DerivedClock(String, Clock, long) - Constructor for class avrora.sim.clock.DerivedClock
  The constructor of the `DerivedClock` creates a new clock with the specified name, driven by the specified clock, with the specified clockrate.
DerivedFormat(Token, Token) - Method in class avrora.core.isdl.parser.ISDLParser
Directive() - Method in class avrora.syntax.atmel.AtmelParser
Directive() - Method in class avrora.syntax.gas.GASParser
DisassembleAction - class avrora.actions.DisassembleAction.
  The `DisassembleAction` class represents an action that allows the user to disassemble a binary file and display the instructions.
DisassembleAction() - Constructor for class avrora.actions.DisassembleAction
Disassembler - class avrora.core.Disassembler.
  The `Disassembler` class is (partially) generated from the instruction set description.
Disassembler() - Constructor for class avrora.core.Disassembler
Disassembler.InvalidInstruction - exception avrora.core.Disassembler.InvalidInstruction.
  The `InvalidInstruction` class represents an exception generated by the disassembler when it is given a machine code instruction that does not correspond to a well-formed instruction.
DisassemblerGenerator - class avrora.core.isdl.gen.DisassemblerGenerator.
DisassemblerGenerator(Architecture, Printer) - Constructor for class avrora.core.isdl.gen.DisassemblerGenerator
DisassemblerTestGenerator - class avrora.core.isdl.gen.DisassemblerTestGenerator.
DisassemblerTestGenerator(Architecture, File) - Constructor for class avrora.core.isdl.gen.DisassemblerTestGenerator
DisassemblerTestHarness - class avrora.test.DisassemblerTestHarness.
  The `SimulatorTestHarness` implements a test harness that interfaces the `avrora.test.AutomatedTester` in order to automate testing of the AVR parser and simulator.
DisassemblerTestHarness() - Constructor for class avrora.test.DisassemblerTestHarness
Distance - class avrora.sim.radio.freespace.Distance.
  stores the between a node and the node who own radio
Distance(LocalAirImpl, double) - Constructor for class avrora.sim.radio.freespace.Distance
  new Disance
Distribution - class avrora.util.profiling.Distribution.
  This class keeps track of the min, max, and median of a stream of integers, as well as the distribution of each.
Distribution(String) - Constructor for class avrora.util.profiling.Distribution
  This is the public constructor.
Distribution(String, String, String) - Constructor for class avrora.util.profiling.Distribution
  Public constructor initializes the statistics for a sequence of integers.
Distribution(String, String, String, String) - Constructor for class avrora.util.profiling.Distribution
  Public constructor initializes the statistics for a sequence of integers.
Done() - Method in class avrora.core.isdl.parser.SimpleCharStream
Done() - Method in class avrora.syntax.atmel.SimpleCharStream
Done() - Method in class avrora.syntax.gas.SimpleCharStream
Done() - Method in class avrora.syntax.objdump.SimpleCharStream
Done() - Method in class avrora.test.probes.SimpleCharStream
DoubleWordDirective() - Method in class avrora.syntax.atmel.AtmelParser
DoubleWordDirective() - Method in class avrora.syntax.gas.GASParser
data - Variable in class avrora.sim.mcu.SPI.Frame
data - Variable in class avrora.sim.platform.sensors.Sensor
data - Variable in class avrora.sim.radio.Radio.Transmission
dataSegment - Variable in class avrora.syntax.Module
data_addr - Variable in class avrora.sim.InterpreterError.AddressOutOfBoundsException
data_addr - Variable in class avrora.sim.Segment.AddressOutOfBoundsException
data_end - Variable in class avrora.core.Program
  The `data_end` field records the address following the highest address in the program with declared, labelled memory in the data segment.
data_start - Variable in class avrora.core.Program
  The `data_start` field records the lowest address of declared, labelled memory in the data segment.
deactivate() - Method in class avrora.sim.radio.CC1000Radio.Receiver
deactivate() - Method in class avrora.sim.radio.CC1000Radio.Transmitter
debugAppend(String) - Method in class avrora.gui.AvroraGui
  Used by DebugStream to allow writing to the debug window.
debugStream - Variable in class avrora.core.isdl.parser.ISDLParserTokenManager
debugStream - Variable in class avrora.syntax.atmel.AtmelParserTokenManager
debugStream - Variable in class avrora.syntax.gas.GASParserTokenManager
debugStream - Variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
debugStream - Variable in class avrora.test.probes.ProbeParserTokenManager
decode(byte) - Method in class avrora.sim.mcu.ADC.ADCRegister
decode(byte) - Method in class avrora.sim.mcu.ADC.MUXRegister
decode(byte) - Method in class avrora.sim.mcu.ATMegaFamily.Timer0.ASSRRegister
decode(byte) - Method in class avrora.sim.mcu.EEPROM.EECRReg
decode(byte) - Method in class avrora.sim.mcu.SPI.SPCRReg
decode(byte) - Method in class avrora.sim.mcu.USART.ControlRegisterB
decode(byte) - Method in class avrora.sim.mcu.USART.ControlRegisterC
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.CALRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.CurrentRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.DummyRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.FSCTRLRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.FrequencyRegister.FrequencySubRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister.SubRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.FrontEndRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.LockRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.MainRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.MatchRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.Modem0Register
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.Modem1Register
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.Modem2Register
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.PA_POWRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.PLLRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.PrescalerRegister
decode(byte) - Method in class avrora.sim.radio.CC1000Radio.RadioRegister
decrement(char) - Static method in class avrora.stack.AbstractArithmetic
  The `decrement()` method simply subtracts 1 to the abstract value.
deepCompare(StateCache.State) - Method in class avrora.stack.AbstractState
def - Variable in class avrora.sim.radio.CC1000Radio.RadioRegister
defaultElements - Static variable in class avrora.stack.isea.ISEState
defaultStack - Static variable in class avrora.stack.isea.ISEState
default_high - Variable in class avrora.util.Option.Interval
  The `default_high` field stores the default (initial) high value for this option.
default_low - Variable in class avrora.util.Option.Interval
  The `default_low` field stores the default (initial) low value for this option.
defineClass(File) - Method in class avrora.sim.dbbc.DBBC.DBBCClassLoader
definite - Variable in class avrora.core.isdl.dep.StateUse.BitUse
definite - Variable in class avrora.core.isdl.dep.StateUse.GlobalUse
definite - Variable in class avrora.core.isdl.dep.StateUse.MapUse
definitions - Variable in class avrora.syntax.Module
defvalue - Variable in class avrora.util.Option.Bool
  The `defvalue` field stores the default (initial) value for this option.
defvalue - Variable in class avrora.util.Option.Double
  The `defvalue` field stores the default (initial) value for this option.
defvalue - Variable in class avrora.util.Option.Long
  The `defvalue` field stores the default (initial) value for this option.
defvalue - Variable in class avrora.util.Option.Str
  The `defvalue` field stores the default (initial) value for this option.
delay(long) - Method in class avrora.sim.BaseInterpreter
  The `delay()` method is used to add some delay cycles before the next instruction is executed.
delay(long) - Method in class avrora.sim.Simulator
  The `delay()` method introduces a delay in the execution of the instructions of the program.
delayCycles - Variable in class avrora.sim.BaseInterpreter
  The `delayCycles` field tracks the number of cycles that the microcontroller is delayed.
deleteStateSets() - Method in class avrora.stack.StateTransitionGraph
deliveryTime - Variable in class avrora.sim.radio.Radio.Transmission
description - Variable in class avrora.util.Option
  The `description` field stores a reference to the string that represents the help item for this option.
destruct() - Method in class avrora.gui.SingleNodeMonitor.SingleNodePanel
destruct(Simulation, Simulation.Node, Simulator) - Method in class avrora.gui.SingleNodeMonitor
  This is called at the end of the simulation to remove any data structures associated with the nodes.
destruct() - Method in class avrora.gui.VisualStackMonitor.SPMon
destruct(Simulation, Simulation.Node, Simulator) - Method in interface avrora.sim.Simulation.Monitor
devicePrinter - Variable in class avrora.sim.mcu.AtmelInternalDevice
devices - Variable in class avrora.sim.mcu.AtmelMicrocontroller
devices - Variable in class avrora.sim.platform.Platform
disable() - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
disable() - Method in interface avrora.sim.radio.Radio.RadioController
  Disable transfers.
disableConnect() - Method in class avrora.sim.platform.PinWire
disableInput() - Method in class avrora.sim.mcu.Microcontroller.InputPin
disableInput() - Method in interface avrora.sim.mcu.Microcontroller.Pin.Input
  The `disableInput()` method is called by the simulator when the program changes the direction of the pin.
disableInterrupts() - Method in class avrora.sim.BaseInterpreter
  The `disableInterrupts()` method disables all of the interrupts.
disableOutput() - Method in class avrora.sim.mcu.Microcontroller.OutputPin
disableOutput() - Method in interface avrora.sim.mcu.Microcontroller.Pin.Output
  The `disableOutput()` method is called by the simulator when the program changes the direction of the pin.
disablePrinting() - Method in class avrora.sim.platform.LED
disable_tracing() - Method in class avrora.core.isdl.parser.ISDLParser
disable_tracing() - Method in class avrora.syntax.atmel.AtmelParser
disable_tracing() - Method in class avrora.syntax.gas.GASParser
disable_tracing() - Method in class avrora.syntax.objdump.ObjDumpParser
disable_tracing() - Method in class avrora.test.probes.ProbeParser
disassemble(int, byte[], int) - Method in class avrora.core.Disassembler
  The `disassemble()` method disassembles a single instruction from binary code.
dispatchVisitors() - Static method in class avrora.util.profiling.Databank
  Dispatch all visitors onto databases
distance - Variable in class avrora.sim.radio.freespace.Distance
distrib - Variable in class avrora.util.profiling.Distribution
  The `distrib` field stores an array that records the number of occurrences for each value in the distribution.
distribMin - Variable in class avrora.util.profiling.Distribution
  The `distribMin` field stores the value corresponding to expr 0 in the `distrib` array.
distribname - Variable in class avrora.util.profiling.Distribution
  The `distribname` field stores the string that should be reported as the name of the distribution, e.g.
divider - Variable in class avrora.sim.clock.ClockPrescaler
  The `divider` stores the number of cycles of the underlying clock are equivalent to one cycle of this clock.
divider - Variable in class avrora.sim.clock.DerivedClock
  The `divider` stores a the ration between the clockspeed of the drive clock and the clockspeed of this clock.
dot - Variable in class avrora.syntax.Expr.RelativeAddress
drawScale(Dimension, Graphics) - Method in class avrora.gui.TimeScale
driveClock - Variable in class avrora.sim.clock.ClockPrescaler
  The `driveClock` field stores a reference to the clock that the prescaler is derived from.
driveClock - Variable in class avrora.sim.clock.DerivedClock
  The `driveClock` field stores a reference to the clock that is underlying this derived clock.
dump() - Method in class avrora.stack.Analyzer
dump(Printer) - Method in class avrora.stack.StateTransitionGraph
dup() - Method in class avrora.stack.isea.ISEState
dup(char, int) - Static method in class avrora.util.StringUtil
  The `dup()` method takes a character and a count and returns a string where that character has been duplicated the specified number of times.

## E

ECHO_EVENT - Static variable in class avrora.sim.platform.ExternalFlash
EDGE_DELTA - Static variable in class avrora.stack.Analyzer
EDGE_NAMES - Static variable in class avrora.stack.Analyzer
EEARH - Static variable in class avrora.sim.mcu.EEPROM
EEARH - Static variable in interface avrora.stack.IORegisterConstants
EEARL - Static variable in class avrora.sim.mcu.EEPROM
EEARL - Static variable in interface avrora.stack.IORegisterConstants
EECR - Static variable in class avrora.sim.mcu.EEPROM
EECR - Static variable in interface avrora.stack.IORegisterConstants
EEDR - Static variable in class avrora.sim.mcu.EEPROM
EEDR - Static variable in interface avrora.stack.IORegisterConstants
EEPROM - class avrora.sim.mcu.EEPROM.
  This is an implementation of the non-volatile EEPROM on the ATMega128 microcontroller.
EEPROM.EEARHReg - class avrora.sim.mcu.EEPROM.EEARHReg.
EEPROM.EEARHReg() - Constructor for class avrora.sim.mcu.EEPROM.EEARHReg
EEPROM.EECRReg - class avrora.sim.mcu.EEPROM.EECRReg.
EEPROM.EECRReg() - Constructor for class avrora.sim.mcu.EEPROM.EECRReg
EEPROM.EEPROMTicker - class avrora.sim.mcu.EEPROM.EEPROMTicker.
EEPROM.EEPROMTicker() - Constructor for class avrora.sim.mcu.EEPROM.EEPROMTicker
EGPR_set - Static variable in class avrora.core.Register
EICALL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
EICALL - Static variable in interface avrora.syntax.gas.GASParserConstants
EICALL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
EICRA - Static variable in interface avrora.stack.IORegisterConstants
EICRB - Static variable in interface avrora.stack.IORegisterConstants
EIFR - Static variable in interface avrora.stack.IORegisterConstants
EIFR_reg - Variable in class avrora.sim.mcu.ATMegaFamily
EIJMP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
EIJMP - Static variable in interface avrora.syntax.gas.GASParserConstants
EIJMP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
EIMSK - Static variable in interface avrora.stack.IORegisterConstants
EIMSK - Static variable in class avrora.stack.isea.ISEValue
EIMSK_NUM - Static variable in class avrora.stack.isea.ISEState
EIMSK_OFF - Static variable in class avrora.stack.isea.ISEState
ELPM - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ELPM - Static variable in interface avrora.syntax.gas.GASParserConstants
ELPM - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ELSE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
EMPTY - Variable in class avrora.monitors.ProfileMonitor
EMPTY_STRING_ARRAY - Static variable in class avrora.util.StringUtil
ENABLED - Static variable in class avrora.util.Status
ENCODING - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
EOF - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
EOF - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
EOF - Static variable in interface avrora.syntax.gas.GASParserConstants
EOF - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
EOF - Static variable in interface avrora.test.probes.ProbeParserConstants
EOR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
EOR - Static variable in interface avrora.syntax.gas.GASParserConstants
EOR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
EQU - Static variable in interface avrora.syntax.gas.GASParserConstants
EQUAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
EQUALS - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
ERROR - Variable in class avrora.syntax.Module
ERROR_COLOR - Static variable in class avrora.util.Terminal
ETIFR - Static variable in interface avrora.stack.IORegisterConstants
ETIFR_reg - Variable in class avrora.sim.mcu.ATMegaFamily
ETIMSK - Static variable in interface avrora.stack.IORegisterConstants
ETIMSK_reg - Variable in class avrora.sim.mcu.ATMegaFamily
EVENT - Static variable in interface avrora.test.probes.ProbeParserConstants
EXECUTE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
EXP2 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
EXP2 - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
EXTCLOCKSPEED - Variable in class avrora.sim.Simulation
EXTERNAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
Encoding(Token) - Method in class avrora.core.isdl.parser.ISDLParser
EncodingCond() - Method in class avrora.core.isdl.parser.ISDLParser
EncodingDecl - class avrora.core.isdl.EncodingDecl.
  The `EncodingDecl` class represents the encoding of an instruction in machine code, describing how to encode the mnemonic and operands into binary and vice versa.
EncodingDecl(Token, Token, List) - Constructor for class avrora.core.isdl.EncodingDecl
EncodingDecl.Cond - class avrora.core.isdl.EncodingDecl.Cond.
EncodingDecl.Cond(Token, Expr) - Constructor for class avrora.core.isdl.EncodingDecl.Cond
EncodingDecl.Derived - class avrora.core.isdl.EncodingDecl.Derived.
EncodingDecl.Derived(Token, Token, Token, List) - Constructor for class avrora.core.isdl.EncodingDecl.Derived
EncodingDecl.Substitution - class avrora.core.isdl.EncodingDecl.Substitution.
EncodingDecl.Substitution(Token, Expr) - Constructor for class avrora.core.isdl.EncodingDecl.Substitution
Energy - class avrora.sim.energy.Energy.
  Class for energy modeling.
Energy(String, double[], FiniteStateMachine) - Constructor for class avrora.sim.energy.Energy
  create new energy class, to enable energy modelling
EnergyControl - class avrora.sim.energy.EnergyControl.
  implementation of energy control handles subsrciption of monitors and consumers
EnergyControl() - Constructor for class avrora.sim.energy.EnergyControl
EnergyControl.Instance - class avrora.sim.energy.EnergyControl.Instance.
EnergyMonitor - class avrora.monitors.EnergyMonitor.
  energy monitor implementation this class handles logging and recording of power consumption.
EnergyMonitor() - Constructor for class avrora.monitors.EnergyMonitor
  create a new monitor
EnergyMonitor(String) - Constructor for class avrora.monitors.EnergyMonitor
EnergyMonitor.Monitor - class avrora.monitors.EnergyMonitor.Monitor.
EnergyMonitor.Monitor.BatteryCheck - class avrora.monitors.EnergyMonitor.Monitor.BatteryCheck.
EnergyMonitor.Monitor.BatteryCheck() - Constructor for class avrora.monitors.EnergyMonitor.Monitor.BatteryCheck
EnergyMonitorLog - class avrora.monitors.EnergyMonitorLog.
  energy monitor implementation this class handles logging and recording of power consumption.
EnergyMonitorLog() - Constructor for class avrora.monitors.EnergyMonitorLog
  create a new monitor
EnergyMonitorLog.Monitor - class avrora.monitors.EnergyMonitorLog.Monitor.
EnergyObserver - interface avrora.sim.energy.EnergyObserver.
  energy monitor interface
EnergyProfiler - class avrora.monitors.EnergyProfiler.
  The `EnergyProfiler` class is a monitor that tracks the power consumption of the cpu instructions.
EnergyProfiler() - Constructor for class avrora.monitors.EnergyProfiler
  The constructor for the `EnergyProfiler` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
EnergyProfiler.EnergyProfile - class avrora.monitors.EnergyProfiler.EnergyProfile.
EnergyProfiler.EnergyProfile(Program.Location) - Constructor for class avrora.monitors.EnergyProfiler.EnergyProfile
  construct a new energy profile
EnergyProfiler.Monitor - class avrora.monitors.EnergyProfiler.Monitor.
  The `EnergyProfiler` class is a monitor that tracks the power consumption of the cpu instructions.
EnergyProfiler.Monitor.ProcedureProbe - class avrora.monitors.EnergyProfiler.Monitor.ProcedureProbe.
EnergyProfiler.Monitor.ProcedureProbe() - Constructor for class avrora.monitors.EnergyProfiler.Monitor.ProcedureProbe
EnergyProfiler.Monitor.SleepProbe - class avrora.monitors.EnergyProfiler.Monitor.SleepProbe.
EnergyProfiler.Monitor.SleepProbe() - Constructor for class avrora.monitors.EnergyProfiler.Monitor.SleepProbe
EqExpr() - Method in class avrora.syntax.atmel.AtmelParser
EqExpr() - Method in class avrora.syntax.gas.GASParser
EquDirective() - Method in class avrora.syntax.atmel.AtmelParser
EquDirective() - Method in class avrora.syntax.gas.GASParser
Equ_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
ErrorReporter - class avrora.util.ErrorReporter.
  The `ErrorReporter` is the super class of all error reporters in Avrora.
ErrorReporter() - Constructor for class avrora.util.ErrorReporter
Event(ProbeTest) - Method in class avrora.test.probes.ProbeParser
EventDeclaration(ProbeTest) - Method in class avrora.test.probes.ProbeParser
Execute(List) - Method in class avrora.core.isdl.parser.ISDLParser
ExitDirective() - Method in class avrora.syntax.atmel.AtmelParser
ExpandBuff(boolean) - Method in class avrora.core.isdl.parser.SimpleCharStream
ExpandBuff(boolean) - Method in class avrora.syntax.atmel.SimpleCharStream
ExpandBuff(boolean) - Method in class avrora.syntax.gas.SimpleCharStream
ExpandBuff(boolean) - Method in class avrora.syntax.objdump.SimpleCharStream
ExpandBuff(boolean) - Method in class avrora.test.probes.SimpleCharStream
Expr - class avrora.core.isdl.ast.Expr.
  The `Expr` class represents an expression in the IR.
Expr() - Constructor for class avrora.core.isdl.ast.Expr
Expr() - Method in class avrora.core.isdl.parser.ISDLParser
Expr - class avrora.syntax.Expr.
  The `Expr` class represents an expression within the program that must be evaluated to a value.
Expr() - Constructor for class avrora.syntax.Expr
Expr() - Method in class avrora.syntax.atmel.AtmelParser
Expr() - Method in class avrora.syntax.gas.GASParser
Expr.BinOp - class avrora.syntax.Expr.BinOp.
  The `BinOp` class represents a simple binary arithmetic operator such as addition, multiplication, etc.
Expr.BinOp(AbstractToken, Expr, Expr) - Constructor for class avrora.syntax.Expr.BinOp
Expr.CharLiteral - class avrora.syntax.Expr.CharLiteral.
  The `CharLiteral` class represents a character literal in the program that can be used as an integer value.
Expr.CharLiteral(AbstractToken) - Constructor for class avrora.syntax.Expr.CharLiteral
Expr.Constant - class avrora.syntax.Expr.Constant.
  The `Constant` class represents a integer literal (a constant) within the program.
Expr.Constant(AbstractToken) - Constructor for class avrora.syntax.Expr.Constant
Expr.Func - class avrora.syntax.Expr.Func.
  The `Func` class represents a builtin function that is applied to an operand.
Expr.Func(AbstractToken, Expr, AbstractToken) - Constructor for class avrora.syntax.Expr.Func
Expr.RelativeAddress - class avrora.syntax.Expr.RelativeAddress.
  The `RelativeAddress` class represents an expression that is derived from the addition (or subtraction) of a constant to the current byte address.
Expr.RelativeAddress(AbstractToken, AbstractToken, AbstractToken) - Constructor for class avrora.syntax.Expr.RelativeAddress
Expr.StringLiteral - class avrora.syntax.Expr.StringLiteral.
  The `StringLiteral` class represents a string literal within the program.
Expr.StringLiteral(AbstractToken) - Constructor for class avrora.syntax.Expr.StringLiteral
Expr.Term - class avrora.syntax.Expr.Term.
  The `Term` class is a superclass for all expressions that consist of a single lexical token.
Expr.UnOp - class avrora.syntax.Expr.UnOp.
  The `UnOp` class represents an expression that is a single operand with a unary operation applied to it.
Expr.UnOp(AbstractToken, Expr) - Constructor for class avrora.syntax.Expr.UnOp
Expr.Variable - class avrora.syntax.Expr.Variable.
  The `Variable` class represents a variable reference within the program.
Expr.Variable(AbstractToken) - Constructor for class avrora.syntax.Expr.Variable
ExprList() - Method in class avrora.core.isdl.parser.ISDLParser
ExprList - class avrora.syntax.ExprList.
  The `ExprList` class represents a list of expressions within the program.
ExprList() - Constructor for class avrora.syntax.ExprList
ExprList.ExprItem - class avrora.syntax.ExprList.ExprItem.
ExprList.ExprItem(Expr) - Constructor for class avrora.syntax.ExprList.ExprItem
ExprVisitor - interface avrora.core.isdl.ast.ExprVisitor.
  The `ExprVisitor` interface is part of the visitor pattern for expressions within the program.
ExprVisitor.DepthFirst - class avrora.core.isdl.ast.ExprVisitor.DepthFirst.
  The `DepthFirst` class is a base implementation of the `ExprVisitor` interface that visits the tree in depth-first order.
ExprVisitor.DepthFirst() - Constructor for class avrora.core.isdl.ast.ExprVisitor.DepthFirst
ExternalFlash - class avrora.sim.platform.ExternalFlash.
  The `ExternalFlash` class implements the necessary functionality of the Atmega Dataflash interface to use the Mica2 DataFlash This device requires use of the following pins:

  PA3 - Flash Cable Seclect

  PD2 - USART1_RXD PD3 - USART1_TXD PD5 - USART1_CLK
ExternalFlash(Microcontroller) - Constructor for class avrora.sim.platform.ExternalFlash
ExternalFlash.Delay - class avrora.sim.platform.ExternalFlash.Delay.
ExternalFlash.Delay() - Constructor for class avrora.sim.platform.ExternalFlash.Delay
ExternalFlash.PA3Output - class avrora.sim.platform.ExternalFlash.PA3Output.
ExternalFlash.PA3Output() - Constructor for class avrora.sim.platform.ExternalFlash.PA3Output
ExternalFlash.PD2Input - class avrora.sim.platform.ExternalFlash.PD2Input.
ExternalFlash.PD2Input() - Constructor for class avrora.sim.platform.ExternalFlash.PD2Input
ExternalFlash.PD3Output - class avrora.sim.platform.ExternalFlash.PD3Output.
ExternalFlash.PD3Output() - Constructor for class avrora.sim.platform.ExternalFlash.PD3Output
ExternalFlash.PD5Output - class avrora.sim.platform.ExternalFlash.PD5Output.
ExternalFlash.PD5Output() - Constructor for class avrora.sim.platform.ExternalFlash.PD5Output
eastPinInt - Variable in class avrora.sim.platform.PinConnect.PinNode
eastPinRx - Variable in class avrora.sim.platform.PinConnect.PinNode
eastPinTx - Variable in class avrora.sim.platform.PinConnect.PinNode
edge - Variable in class avrora.stack.StateTransitionGraph.EdgeList
edgeType - Variable in class avrora.stack.Analyzer.ContextSensitivePolicy
eepromSegment - Variable in class avrora.syntax.Module
eeprom_end - Variable in class avrora.core.Program
  The `eeprom_end` field records the address following the highest address in the program with declared, labelled memory in the eeprom segment.
eeprom_size - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `eeprom_size` field stores the size of the EEPROM on this microcontroller.
eeprom_start - Variable in class avrora.core.Program
  The `eeprom_start` field records the lowest address of declared, labelled memory in the eeprom segment.
egen - Variable in class avrora.core.isdl.gen.CodemapGenerator
embed(Object) - Static method in class avrora.util.StringUtil
  The `embed()` method simply adds parentheses around a string.
embed(Object, Object) - Static method in class avrora.util.StringUtil
embed(Object, Object, Object) - Static method in class avrora.util.StringUtil
embed(Object, Object, Object, Object) - Static method in class avrora.util.StringUtil
embed(Object, Object, Object, Object, Object) - Static method in class avrora.util.StringUtil
emitAnd(Expr, int) - Method in class avrora.core.isdl.gen.InterpreterGenerator
emitBinOp(Expr, String, int, int) - Method in class avrora.core.isdl.gen.InterpreterGenerator
emitCall(String, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
emitCall(String, Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
emitCall(String, String, Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
enable() - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
enable() - Method in interface avrora.sim.radio.Radio.RadioController
  Enable transfers.
enableConnect() - Method in class avrora.sim.platform.PinWire
enableInput() - Method in class avrora.sim.mcu.Microcontroller.InputPin
enableInput() - Method in interface avrora.sim.mcu.Microcontroller.Pin.Input
  The `enableInput()` method is called by the simulator when the program changes the direction of the pin.
enableInterrupts() - Method in class avrora.sim.BaseInterpreter
  The `enableInterrupts()` method enables all of the interrupts.
enableOutput() - Method in class avrora.sim.mcu.Microcontroller.OutputPin
enableOutput() - Method in interface avrora.sim.mcu.Microcontroller.Pin.Output
  The `enableOutput()` method is called by the simulator when the program changes the direction of the pin.
enablePrinting() - Method in class avrora.sim.platform.LED
enableReceive() - Method in class avrora.sim.mcu.USART.Receiver
enableTransfer() - Method in class avrora.sim.mcu.SPI.TransmitReceive
enableTransmit() - Method in class avrora.sim.mcu.USART.Transmitter
enable_tracing() - Method in class avrora.core.isdl.parser.ISDLParser
enable_tracing() - Method in class avrora.syntax.atmel.AtmelParser
enable_tracing() - Method in class avrora.syntax.gas.GASParser
enable_tracing() - Method in class avrora.syntax.objdump.ObjDumpParser
enable_tracing() - Method in class avrora.test.probes.ProbeParser
enabled - Variable in class avrora.sim.InterruptTable
enabled - Variable in class avrora.sim.Simulator.Printer
  The `enabled` field is true when this printer is enabled.
enabled - Variable in class avrora.util.Verbose.Printer
encode(Instr, byte[], int) - Method in class avrora.core.Assembler
  The `encode()` method translates an assembly instruction into a sequence of bytes and writes them into an array.
encodingList - Variable in class avrora.core.isdl.InstrDecl
endColumn - Variable in class avrora.syntax.AbstractToken
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endColumn - Variable in class avrora.syntax.ProgramPoint
endColumn - Variable in class avrora.test.probes.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class avrora.syntax.AbstractToken
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endLine - Variable in class avrora.test.probes.Token
  beginLine and beginColumn describe the position of the first character of this token; endLine and endColumn describe the position of the last character of this token.
endReceive() - Method in class avrora.sim.radio.CC1000Radio.Receiver
endTransaction() - Method in class avrora.sim.util.TransactionalList
  The `endTransaction()` method unlocks this list from the transaction and will process any queued adds or removes in order from the time the `beginTransaction()` method was called.
endTransmit() - Method in class avrora.sim.radio.CC1000Radio.Transmitter
endblock() - Method in class avrora.util.Printer
endblock(String) - Method in class avrora.util.Printer
endblock() - Method in class avrora.util.Verbose.Printer
enterDataSegment() - Method in class avrora.syntax.Module
enterEEPROMSegment() - Method in class avrora.syntax.Module
enterProgramSegment() - Method in class avrora.syntax.Module
enterSection(AbstractToken) - Method in class avrora.syntax.objdump.RawModule
enterSleepMode() - Method in class avrora.sim.GenInterpreter
  send the node to sleep
entryMap - Variable in class avrora.core.ProcedureMap
entryPoints - Variable in class avrora.core.ProcedureMap
entry_addr - Variable in class avrora.sim.util.SequenceProbe
  The immutable `entry_addr` field stores the address that enables the per-instruction calling of the probe passed in the constructor.
eol - Variable in class avrora.core.isdl.parser.ParseException
  The end of line string for this machine.
eol - Variable in class avrora.syntax.AbstractParseException
  The end of line string for this machine.
eol - Variable in class avrora.test.probes.ParseException
  The end of line string for this machine.
equals(Object) - Method in class avrora.core.ControlFlowGraph.Block
  The `equals()` method computes object equality for basic blocks.
equals(Object) - Method in class avrora.core.Instr.IMMIMM_class
equals(Object) - Method in class avrora.core.Instr.IMMREG_class
equals(Object) - Method in class avrora.core.Instr.IMMWORD_class
equals(Object) - Method in class avrora.core.Instr.IMM_class
equals(Object) - Method in class avrora.core.Instr.NONE_class
equals(Object) - Method in class avrora.core.Instr.REGIMMREG_class
equals(Object) - Method in class avrora.core.Instr.REGIMM_class
equals(Object) - Method in class avrora.core.Instr.REGREGIMM_class
equals(Object) - Method in class avrora.core.Instr.REGREG_class
equals(Object) - Method in class avrora.core.Instr.REG_class
equals(Object) - Method in class avrora.core.Instr.WORD_class
equals(Object) - Method in class avrora.core.Program.Location
  The `equals()` method compares this location against another object.
equals(Object) - Method in class avrora.core.SourceMapping.Location
  The `equals()` method compares this location against another object.
equals(Object) - Method in class avrora.stack.AbstractState
equals(Object) - Method in class avrora.stack.MutableState
  The `equals()` method implements the standard `java.lang.Object` equality testing contract.
equals(Object) - Method in class avrora.stack.StateCache.State
equals(Object) - Method in class avrora.stack.isea.ISEAbstractState
errclass - Variable in class avrora.syntax.SimplifierError
error(Expr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
error(String, String, ProgramPoint) - Method in class avrora.util.ErrorReporter
error(String, String, String, ProgramPoint) - Method in class avrora.util.ErrorReporter
error(String, String, String, String, ProgramPoint) - Method in class avrora.util.ErrorReporter
error(String, String, String, String, String, ProgramPoint) - Method in class avrora.util.ErrorReporter
error() - Static method in class avrora.util.Status
  The `error()` method simply prints out "ERROR" in a stylized fashion was well as the time since the last `begin()` call.
error(String) - Static method in class avrora.util.Status
  The `error()` method simply prints out an error string in a stylized fashion was well as the time since the last `begin()` call.
error(Throwable) - Static method in class avrora.util.Status
  The `error()` method simply prints out "ERROR" in a stylized fashion was well as the time since the last `begin()` call, and then reports the exception.
error(Avrora.Error) - Static method in class avrora.util.Status
  The `error()` method simply prints out "ERROR" in a stylized fashion was well as the time since the last `begin()` call, and then reports the exception.
errorReporter - Variable in class avrora.sim.Segment
errparams - Variable in class avrora.syntax.SimplifierError
evaluate(int, Context) - Method in class avrora.syntax.Expr.BinOp
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.CharLiteral
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.Constant
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.Func
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.RelativeAddress
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.StringLiteral
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.UnOp
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr.Variable
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluate(int, Context) - Method in class avrora.syntax.Expr
  The `evaluate()` method computes the value of the expression in this context and returns its value.
evaluateCharLiteral(String) - Static method in class avrora.util.StringUtil
evaluateIntegerLiteral(String) - Static method in class avrora.util.StringUtil
evaluateStringLiteral(String) - Static method in class avrora.util.StringUtil
eventQueue - Variable in class avrora.sim.clock.MainClock
  The `eventQueue` field stores a reference to the event queue for this node.
exceptionWatch - Variable in class avrora.sim.BaseInterpreter
  The `exceptionWatch` stores a reference to a `MulticastExceptionWatch` that contains all of the exception watches currently registered.
execute(GenInterpreter) - Method in class avrora.sim.dbbc.DBBC.CompiledBlock
execute(List) - Method in class avrora.test.probes.ProbeTest
exit_addr - Variable in class avrora.sim.util.SequenceProbe
  The immutable `exit_addr` field stores the address that disables the per-instruction calling of the probe passed when the nesting level reaches zero.
expandInterval(int, int) - Method in class avrora.util.profiling.Distribution
expected - Variable in class avrora.core.Instr.WrongNumberOfOperands
expectedTokenSequences - Variable in class avrora.core.isdl.parser.ParseException
  Each entry in this array is an array of integers.
expectedTokenSequences - Variable in class avrora.syntax.AbstractParseException
  Each entry in this array is an array of integers.
expectedTokenSequences - Variable in class avrora.test.probes.ParseException
  Each entry in this array is an array of integers.
expr - Variable in class avrora.core.isdl.EncodingDecl.Cond
expr - Variable in class avrora.core.isdl.EncodingDecl.Substitution
expr - Variable in class avrora.core.isdl.ast.AssignStmt
  The `expr` field stores a reference to the expression whose result is assigned to the left hand side.
expr - Variable in class avrora.core.isdl.ast.BitExpr
  The `expr` field stores a reference to the expression whose value the bit will be extracted from.
expr - Variable in class avrora.core.isdl.ast.ConversionExpr
  The `expr` field stores a references to the expression which is evaluated to yield the expr into the map.
expr - Variable in class avrora.core.isdl.ast.ReturnStmt
  The `expr` field stores a reference to the expression that is evaluated and returned to the caller.
expr - Variable in class avrora.syntax.ExprList.ExprItem
expr - Variable in class avrora.syntax.SyntacticOperand.Expr
extClockSpeed - Variable in class avrora.sim.platform.DefaultPlatform.Factory
extended(int) - Method in class avrora.sim.GenInterpreter
externalClock - Variable in class avrora.sim.mcu.Timer16Bit
externalClock - Variable in class avrora.sim.mcu.Timer8Bit
externalFlash - Variable in class avrora.sim.platform.Mica2

## F

FALSE - Static variable in class avrora.core.isdl.gen.ConstantPropagator
FALSE - Static variable in class avrora.stack.AbstractArithmetic
  The `FALSE` field represents the abstract bit that is known to be false.
FF_FRAME - Static variable in class avrora.sim.mcu.SPI
FILE - Variable in class avrora.actions.CFGAction
FILE - Static variable in interface avrora.syntax.gas.GASParserConstants
FILE - Variable in class avrora.syntax.objdump.ODPPAction
FMUL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
FMUL - Static variable in interface avrora.syntax.gas.GASParserConstants
FMUL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
FMULS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
FMULS - Static variable in interface avrora.syntax.gas.GASParserConstants
FMULS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
FMULSU - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
FMULSU - Static variable in interface avrora.syntax.gas.GASParserConstants
FMULSU - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
FOCn - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
FORMAL_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
FORMAL_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
FORMAT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
FREQUENCY - Variable in class avrora.monitors.SimPerfMonitor
FREQ_0A - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_0B - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_1A - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_1B - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_2A - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_2B - Static variable in class avrora.sim.radio.CC1000Radio
FREQ_A_reg - Variable in class avrora.sim.radio.CC1000Radio
FREQ_B_reg - Variable in class avrora.sim.radio.CC1000Radio
FRONT_END - Static variable in class avrora.sim.radio.CC1000Radio
FRONT_END_reg - Variable in class avrora.sim.radio.CC1000Radio
FSCTRL - Static variable in class avrora.sim.radio.CC1000Radio
FSCTRL_reg - Variable in class avrora.sim.radio.CC1000Radio
FSEP0 - Static variable in class avrora.sim.radio.CC1000Radio
FSEP1 - Static variable in class avrora.sim.radio.CC1000Radio
FSEP_reg - Variable in class avrora.sim.radio.CC1000Radio
FS_PD - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
F_REG - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
FileDirective() - Method in class avrora.syntax.gas.GASParser
FileMarkingTokenManager - class avrora.syntax.atmel.FileMarkingTokenManager.
  The `FileMarkingTokenManager` is a subclass of the TokenManager for the Atmel parser that marks each token that is seen with the name of the file that it came from.
FileMarkingTokenManager(SimpleCharStream, String) - Constructor for class avrora.syntax.atmel.FileMarkingTokenManager
FileMarkingTokenManager(SimpleCharStream, int, String) - Constructor for class avrora.syntax.atmel.FileMarkingTokenManager
FileMarkingTokenManager - class avrora.syntax.gas.FileMarkingTokenManager.
  The `FileMarkingTokenManager` is a subclass of the TokenManager for the Atmel parser that marks each token that is seen with the name of the file that it came from.
FileMarkingTokenManager(SimpleCharStream, String) - Constructor for class avrora.syntax.gas.FileMarkingTokenManager
FileMarkingTokenManager(SimpleCharStream, int, String) - Constructor for class avrora.syntax.gas.FileMarkingTokenManager
FileMarkingTokenManager - class avrora.syntax.objdump.FileMarkingTokenManager.
  The `FileMarkingTokenManager` is a subclass of the TokenManager for the Atmel parser that marks each token that is seen with the name of the file that it came from.
FileMarkingTokenManager(SimpleCharStream, String) - Constructor for class avrora.syntax.objdump.FileMarkingTokenManager
FileMarkingTokenManager(SimpleCharStream, int, String) - Constructor for class avrora.syntax.objdump.FileMarkingTokenManager
FillBuff() - Method in class avrora.core.isdl.parser.SimpleCharStream
FillBuff() - Method in class avrora.syntax.atmel.SimpleCharStream
FillBuff() - Method in class avrora.syntax.gas.SimpleCharStream
FillBuff() - Method in class avrora.syntax.objdump.SimpleCharStream
FillBuff() - Method in class avrora.test.probes.SimpleCharStream
FiniteStateMachine - class avrora.sim.FiniteStateMachine.
  The `FiniteStateMachine` class represents a model of a finite state machine that allows probing and monitoring the state of a device.
FiniteStateMachine(Clock, int, String[], int) - Constructor for class avrora.sim.FiniteStateMachine
  This constructor for the `FiniteStateMachine` class creates a new finite state machine with the number of states corresponding to the length of the array containing the names of the states.
FiniteStateMachine(Clock, int, String[], int[][]) - Constructor for class avrora.sim.FiniteStateMachine
  This constructor for the `FiniteStateMachine` class creates a new finite state machine with the number of states corresponding to the length of the array containing the names of the states.
FiniteStateMachine.Probe - interface avrora.sim.FiniteStateMachine.Probe.
  The `Probe` interface allows observation of the state changes of a finite state machine.
FiniteStateMachine.State - class avrora.sim.FiniteStateMachine.State.
  The `State` class represents a state of the finite state machine, including its name as a String, the transition time to each of the other states, and a list of any probes attached to this state.
FiniteStateMachine.TransitionEvent - class avrora.sim.FiniteStateMachine.TransitionEvent.
  The `TransitionEvent` class is used internally by the finite state machine for transitions that take 1 more more clock cycles.
FiniteStateMachine.TransitionEvent() - Constructor for class avrora.sim.FiniteStateMachine.TransitionEvent
Formal() - Method in class avrora.core.isdl.parser.ISDLParser
Formals() - Method in class avrora.core.isdl.parser.ISDLParser
Format(Token) - Method in class avrora.core.isdl.parser.ISDLParser
FormatDecl(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
FreeSpaceAir - class avrora.sim.radio.freespace.FreeSpaceAir.
  Implementation of the free space radio propagation model
FreeSpaceAir(Topology) - Constructor for class avrora.sim.radio.freespace.FreeSpaceAir
  new free space air
FreeSpaceAir.MeetEvent - class avrora.sim.radio.freespace.FreeSpaceAir.MeetEvent.
FreeSpaceAir.MeetEvent() - Constructor for class avrora.sim.radio.freespace.FreeSpaceAir.MeetEvent
Func() - Method in class avrora.syntax.atmel.AtmelParser
Func() - Method in class avrora.syntax.gas.GASParser
FuncName() - Method in class avrora.syntax.atmel.AtmelParser
FuncName() - Method in class avrora.syntax.gas.GASParser
factory - Variable in class avrora.sim.Simulator
  The `factory` field stores a reference to the `InterpreterFactory` which should be used to build an interpreter for this simulator.
failure(String) - Static method in class avrora.Avrora
  The `failure()` method is a utility that constructs a `InternalError` instance with the specified message.
falseBranch - Variable in class avrora.core.isdl.ast.IfStmt
  The `falseBranch` field stores a reference to the list of statements to be executed if the condition is false.
fields - Variable in class avrora.core.isdl.EncodingDecl
fields - Variable in class avrora.sim.mcu.RegisterLayout
  The `fields` field stores a reference to a hashmap that maps from a field name to a representation of the field.
fields - Variable in class avrora.sim.mcu.RegisterSet
file - Variable in class avrora.core.LoadableProgram
file - Variable in class avrora.syntax.AbstractToken
  The file in which the token originated.
file - Variable in class avrora.syntax.ProgramPoint
filename - Variable in class avrora.syntax.atmel.FileMarkingTokenManager
filename - Variable in class avrora.syntax.gas.FileMarkingTokenManager
filename - Variable in class avrora.syntax.objdump.FileMarkingTokenManager
filename - Variable in class avrora.test.TestCase
findMaximalPath(StateCache.State, HashMap, int) - Method in class avrora.stack.Analyzer
  The `findMaximalPath()` method is a recursive procedure that discovers the maximal weight path in the state graph.
fire() - Method in class avrora.gui.SimTimeEvents.PauseEvent
fire() - Method in class avrora.gui.VisualStackMonitor.SPMon
fire() - Method in class avrora.monitors.EnergyMonitor.Monitor.BatteryCheck
fire() - Method in class avrora.monitors.ProfileMonitor.Monitor.PeriodicProfile
fire() - Method in class avrora.sim.FiniteStateMachine.TransitionEvent
fire() - Method in class avrora.sim.Simulator.ClockCycleTimeout
  The `fire()` method is called when the timeout is up.
fire() - Method in interface avrora.sim.Simulator.Event
  The `fire()` method is called when the event to which it is tied happens with in the simulator.
fire() - Method in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
  The `fire()` method of this event is called by the individual event queues of each simulator as they reach this point in time.
fire() - Method in class avrora.sim.mcu.EEPROM.EEPROMTicker
fire() - Method in class avrora.sim.mcu.SPI.TransmitReceive
  Notes.
fire() - Method in class avrora.sim.mcu.Timer16Bit.Ticker
fire() - Method in class avrora.sim.mcu.Timer8Bit.Ticker
fire() - Method in class avrora.sim.mcu.USART.Receiver.Receive
fire() - Method in class avrora.sim.mcu.USART.Transmitter.Transmit
fire() - Method in class avrora.sim.platform.ExternalFlash.Delay
  delay while dataflash is busy
fire() - Method in class avrora.sim.platform.PinConnect.PinEvent
fire() - Method in class avrora.sim.radio.CC1000Radio.ATMegaController.Transmit
fire() - Method in class avrora.sim.radio.CC1000Radio.CALRegister.Calibrate
fire() - Method in class avrora.sim.radio.SimpleAir.MeetEvent
fire() - Method in class avrora.sim.radio.freespace.FreeSpaceAir.MeetEvent
fire() - Method in class avrora.sim.util.InterruptScheduler.ScheduledInterrupt
fire() - Method in class avrora.test.probes.ProbeTest.TestEvent
fireAfter(State, int) - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
fireAfter(State, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.StartupProbe
fireAfter(State, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.StepProbe
fireAfter(State, int) - Method in class avrora.monitors.ProfileMonitor.Monitor.CCProbe
fireAfter(State, int) - Method in class avrora.monitors.StackMonitor.Monitor
fireAfter(State, int) - Method in class avrora.monitors.TraceMonitor.Monitor.EndProbe
fireAfter(State, int) - Method in class avrora.monitors.TraceMonitor.Monitor.GlobalProbe
fireAfter(State, int) - Method in class avrora.sim.Simulator.Probe.Empty
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(State, int) - Method in interface avrora.sim.Simulator.Probe
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(State, int) - Method in class avrora.sim.util.BranchCounter
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(State, int) - Method in class avrora.sim.util.MulticastProbe
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(State, int) - Method in class avrora.sim.util.ProgramTimeProfiler
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(Instr, int, State) - Method in class avrora.sim.util.RangeProfiler
  The `fireAfter()` method is called after the probed instruction executes.
fireAfter(State, int) - Method in class avrora.sim.util.SequenceProbe
  The `fireBefore()` method is called before the probed instruction executes.
fireAfter(State, int) - Method in class avrora.test.probes.ProbeTest.TestProbe
fireAfterBitRead(State, int, int, boolean) - Method in class avrora.sim.Simulator.IORWatch.Empty
  The `fireAfterBitRead()` method is called after the data address is read by the program.
fireAfterBitRead(State, int, int, boolean) - Method in interface avrora.sim.Simulator.IORWatch
  The `fireAfterBitRead()` method is called after the data address is read by the program.
fireAfterBitRead(State, int, int, boolean) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireAfterBitRead()` method is called after the data address is read by the program.
fireAfterBitWrite(State, int, int, boolean) - Method in class avrora.sim.Simulator.IORWatch.Empty
  The `fireAfterBitWrite()` method is called after the data address is written by the program.
fireAfterBitWrite(State, int, int, boolean) - Method in interface avrora.sim.Simulator.IORWatch
  The `fireAfterBitWrite()` method is called after the data address is written by the program.
fireAfterBitWrite(State, int, int, boolean) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireAfterBitWrite()` method is called after the data address is written by the program.
fireAfterInvoke(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireAfterInvoke()` method of an interrupt probe will be called by the simulator after control is transferred to this interrupt handler, i.e. after the current PC is pushed onto the stack, interrupts are disabled, and the current PC is set to the start of the interrupt handler.
fireAfterInvoke(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireAfterInvoke()` method of an interrupt probe will be called by the simulator after control is transferred to this interrupt handler, i.e. after the current PC is pushed onto the stack, interrupts are disabled, and the current PC is set to the start of the interrupt handler.
fireAfterInvoke(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireAfterInvoke()` method of an interrupt probe will be called by the simulator after control is transferred to this interrupt handler, i.e. after the current PC is pushed onto the stack, interrupts are disabled, and the current PC is set to the start of the interrupt handler.
fireAfterRead(State, int, byte) - Method in class avrora.sim.Simulator.Watch.Empty
  The `fireAfterRead()` method is called after the data address is read by the program.
fireAfterRead(State, int, byte) - Method in interface avrora.sim.Simulator.Watch
  The `fireAfterRead()` method is called after the data address is read by the program.
fireAfterRead(Instr, int, State, int, byte) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `fireAfterRead()` method is called after the data address is read by the program.
fireAfterRead(State, int, byte) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireAfterRead()` method is called after the probed address is read by the program.
fireAfterRead(State, int, byte) - Method in class avrora.sim.util.MulticastWatch
  The `fireAfterRead()` method is called after the probed address is read by the program.
fireAfterRead(State, int, byte) - Method in class avrora.test.probes.ProbeTest.TestWatch
fireAfterTransition(int, int) - Method in class avrora.monitors.SleepMonitor.Monitor
fireAfterTransition(int, int) - Method in interface avrora.sim.FiniteStateMachine.Probe
  The `fireAfterTransition()` method allows the probe to gain control after the state machine transitions between two states.
fireAfterTransition(int, int) - Method in class avrora.sim.energy.Energy
  The `fireAfterTransition()` method allows the probe to gain control after the state machine transitions between two states.
fireAfterTransition(int, int) - Method in class avrora.sim.util.MulticastFSMProbe
fireAfterWrite(State, int, byte) - Method in class avrora.sim.Simulator.Watch.Empty
  The `fireAfterWrite()` method is called after the data address is written by the program.
fireAfterWrite(State, int, byte) - Method in interface avrora.sim.Simulator.Watch
  The `fireAfterWrite()` method is called after the data address is written by the program.
fireAfterWrite(Instr, int, State, int, byte) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `fireAfterWrite()` method is called after the data address is written by the program.
fireAfterWrite(State, int, byte) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireAfterWrite()` method is called after the probed address is written by the program.
fireAfterWrite(State, int, byte) - Method in class avrora.sim.util.MulticastWatch
  The `fireAfterWrite()` method is called after the probed address is written by the program.
fireAfterWrite(State, int, byte) - Method in class avrora.test.probes.ProbeTest.TestWatch
fireAtBitRateChange(Radio, int) - Method in class avrora.sim.radio.Radio.RadioProbe.Empty
fireAtBitRateChange(Radio, int) - Method in interface avrora.sim.radio.Radio.RadioProbe
fireAtFrequencyChange(Radio, double) - Method in class avrora.sim.radio.Radio.RadioProbe.Empty
fireAtFrequencyChange(Radio, double) - Method in interface avrora.sim.radio.Radio.RadioProbe
fireAtPowerChange(Radio, int) - Method in class avrora.sim.radio.Radio.RadioProbe.Empty
fireAtPowerChange(Radio, int) - Method in interface avrora.sim.radio.Radio.RadioProbe
fireAtReceive(Radio, Radio.Transmission) - Method in class avrora.sim.radio.Radio.RadioProbe.Empty
fireAtReceive(Radio, Radio.Transmission) - Method in interface avrora.sim.radio.Radio.RadioProbe
fireAtTransmit(Radio, Radio.Transmission) - Method in class avrora.sim.radio.Radio.RadioProbe.Empty
fireAtTransmit(Radio, Radio.Transmission) - Method in interface avrora.sim.radio.Radio.RadioProbe
fireBefore(State, int) - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
fireBefore(State, int) - Method in class avrora.monitors.EnergyProfiler.Monitor.ProcedureProbe
  fired before the basic block is entered, it logs the previos state
fireBefore(State, int) - Method in class avrora.monitors.EnergyProfiler.Monitor.SleepProbe
  fired before a sleep mode is entered, it logs the previos state
fireBefore(State, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.BreakpointProbe
fireBefore(State, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.StartupProbe
fireBefore(State, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.StepProbe
fireBefore(State, int) - Method in class avrora.monitors.InteractiveMonitor.BreakPointProbe
fireBefore(State, int) - Method in class avrora.monitors.ProfileMonitor.Monitor.CCProbe
fireBefore(State, int) - Method in class avrora.monitors.ProfileMonitor.Monitor.CProbe
fireBefore(State, int) - Method in class avrora.monitors.TraceMonitor.Monitor.GlobalProbe
fireBefore(State, int) - Method in class avrora.monitors.TraceMonitor.Monitor.StartProbe
fireBefore(State, int) - Method in class avrora.monitors.TripTimeMonitor.PointToPointMon.PTPProbe
fireBefore(State, int) - Method in class avrora.sim.Simulator.Probe.Empty
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in interface avrora.sim.Simulator.Probe
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.sim.util.Counter
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.sim.util.MulticastProbe
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.sim.util.ProgramProfiler
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.sim.util.ProgramTimeProfiler
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(Instr, int, State) - Method in class avrora.sim.util.RangeProfiler
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.sim.util.SequenceProbe
  The `fireBefore()` method is called before the probed instruction executes.
fireBefore(State, int) - Method in class avrora.test.probes.ProbeTest.TestProbe
fireBeforeBitRead(State, int, int) - Method in class avrora.sim.Simulator.IORWatch.Empty
  The `fireBeforeBitRead()` method is called before the data address is read by the program.
fireBeforeBitRead(State, int, int) - Method in interface avrora.sim.Simulator.IORWatch
  The `fireBeforeBitRead()` method is called before the data address is read by the program.
fireBeforeBitRead(State, int, int) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireBeforeBitRead()` method is called before the data address is read by the program.
fireBeforeBitWrite(State, int, int, boolean) - Method in class avrora.sim.Simulator.IORWatch.Empty
  The `fireBeforeBitWrite()` method is called before the data address is written by the program.
fireBeforeBitWrite(State, int, int, boolean) - Method in interface avrora.sim.Simulator.IORWatch
  The `fireBeforeBitWrite()` method is called before the data address is written by the program.
fireBeforeBitWrite(State, int, int, boolean) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireBeforeBitWrite()` method is called before the data address is written by the program.
fireBeforeInvoke(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireBeforeInvoke()` method of an interrupt probe will be called by the simulator before control is transferred to this interrupt, before the microcontroller has been woken from its current sleep mode.
fireBeforeInvoke(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireBeforeInvoke()` method of an interrupt probe will be called by the simulator before control is transferred to this interrupt, before the microcontroller has been woken from its current sleep mode.
fireBeforeInvoke(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireBeforeInvoke()` method of an interrupt probe will be called by the simulator before control is transferred to this interrupt, before the microcontroller has been woken from its current sleep mode.
fireBeforeRead(State, int) - Method in class avrora.sim.Simulator.Watch.Empty
  The `fireBeforeRead()` method is called before the data address is read by the program.
fireBeforeRead(State, int) - Method in interface avrora.sim.Simulator.Watch
  The `fireBeforeRead()` method is called before the data address is read by the program.
fireBeforeRead(State, int) - Method in class avrora.sim.util.MemoryCounter
  The `fireBeforeRead()` method is called before the data address is read by the program.
fireBeforeRead(Instr, int, State, int, byte) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `fireBeforeRead()` method is called before the data address is read by the program.
fireBeforeRead(State, int) - Method in class avrora.sim.util.MemoryProfiler
fireBeforeRead(State, int) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireBeforeRead()` method is called before the probed address is read by the program.
fireBeforeRead(State, int) - Method in class avrora.sim.util.MulticastWatch
  The `fireBeforeRead()` method is called before the probed address is read by the program.
fireBeforeRead(State, int) - Method in class avrora.test.probes.ProbeTest.TestWatch
fireBeforeTransition(int, int) - Method in class avrora.monitors.SleepMonitor.Monitor
fireBeforeTransition(int, int) - Method in interface avrora.sim.FiniteStateMachine.Probe
  The `fireBeforeTransition()` method allows the probe to gain control before the state machine transitions between two states.
fireBeforeTransition(int, int) - Method in class avrora.sim.energy.Energy
  The `fireBeforeTransition()` method allows the probe to gain control before the state machine transitions between two states.
fireBeforeTransition(int, int) - Method in class avrora.sim.util.MulticastFSMProbe
fireBeforeWrite(State, int, byte) - Method in class avrora.sim.Simulator.Watch.Empty
  The `fireBeforeWrite()` method is called before the data address is written by the program.
fireBeforeWrite(State, int, byte) - Method in interface avrora.sim.Simulator.Watch
  The `fireBeforeWrite()` method is called before the data address is written by the program.
fireBeforeWrite(State, int, byte) - Method in class avrora.sim.util.MemoryCounter
  The `fireBeforeWrite()` method is called before the data address is written by the program.
fireBeforeWrite(Instr, int, State, int, byte) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `fireBeforeWrite()` method is called before the data address is written by the program.
fireBeforeWrite(State, int, byte) - Method in class avrora.sim.util.MemoryProfiler
fireBeforeWrite(State, int, byte) - Method in class avrora.sim.util.MulticastIORWatch
  The `fireBeforeWrite()` method is called before the probed address is written by the program.
fireBeforeWrite(State, int, byte) - Method in class avrora.sim.util.MulticastWatch
  The `fireBeforeWrite()` method is called before the probed address is written by the program.
fireBeforeWrite(State, int, byte) - Method in class avrora.test.probes.ProbeTest.TestWatch
fireWhenDisabled(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireWhenDisabled()` method of an interrupt probe will be called by the simulator when the interrupt is masked out (disabled) by the program.
fireWhenDisabled(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireWhenDisabled()` method of an interrupt probe will be called by the simulator when the interrupt is masked out (disabled) by the program.
fireWhenDisabled(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireWhenDisabled()` method of an interrupt probe will be called by the simulator when the interrupt is masked out (disabled) by the program.
fireWhenEnabled(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireWhenEnabled()` method of an interrupt probe will be called by the simulator when the interrupt is unmasked (enabled) by the program.
fireWhenEnabled(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireWhenEnabled()` method of an interrupt probe will be called by the simulator when the interrupt is unmasked (enabled) by the program.
fireWhenEnabled(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireWhenEnabled()` method of an interrupt probe will be called by the simulator when the interrupt is unmasked (enabled) by the program.
fireWhenPosted(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireWhenPosted()` method of an interrupt probe will be called by the simulator when the interrupt is posted.
fireWhenPosted(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireWhenPosted()` method of an interrupt probe will be called by the simulator when the interrupt is posted.
fireWhenPosted(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireWhenPosted()` method of an interrupt probe will be called by the simulator when the interrupt is posted.
fireWhenUnposted(State, int) - Method in class avrora.sim.Simulator.InterruptProbe.Empty
  The `fireWhenUnposted()` method of an interrupt probe will be called by the simulator when the interrupt is unposted.
fireWhenUnposted(State, int) - Method in interface avrora.sim.Simulator.InterruptProbe
  The `fireWhenUnposted()` method of an interrupt probe will be called by the simulator when the interrupt is unposted.
fireWhenUnposted(State, int) - Method in class avrora.sim.util.MulticastInterruptProbe
  The `fireWhenUnposted()` method of an interrupt probe will be called by the simulator when the interrupt is unposted.
firstUnknownOption - Variable in class avrora.util.Options
flag() - Method in class avrora.sim.mcu.ATMegaFamily.FlagBit
flagBit(int) - Method in class avrora.sim.mcu.ATMegaFamily.FlagRegister
flash - Variable in class avrora.sim.BaseInterpreter
flash_data - Variable in class avrora.core.Program
  The `flash_data` field stores a reference to the array that contains the raw data (bytes) of the program segment.
flash_instrs - Variable in class avrora.core.Program
  The `flash_instrs` field stores a reference to the array that contains the instruction representations of the program segment.
flash_size - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `flash_size` field stores the size of the code segment (flash) on this microcontroller.
floor(char) - Static method in class avrora.stack.AbstractArithmetic
  The `floor()` function computes the concrete value with all unknown bits set to zero.
floor(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `floor()` function computes the concrete value with all unknown bits set to zero.
flush() - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
flush() - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
flush() - Static method in class avrora.util.Terminal
fname - Variable in class avrora.core.LoadableProgram
force(int) - Method in interface avrora.sim.InterruptTable.Notification
force(int) - Method in class avrora.sim.mcu.ADC.ControlRegister
force(int) - Method in class avrora.sim.mcu.ATMegaFamily.FlagBit
force(int) - Method in class avrora.sim.mcu.SPI
forceInterrupt(int) - Method in class avrora.sim.Simulator
  The `forceInterrupt()` method forces the simulator to post the specified interrupt regardless of the normal source of the interrupt.
forwardEdges - Variable in class avrora.stack.StateTransitionGraph.StateInfo
forwardLink - Variable in class avrora.stack.StateTransitionGraph.Edge
found - Variable in class avrora.core.Instr.WrongNumberOfOperands
freeEventLists - Variable in class avrora.sim.clock.DeltaQueue
  The `freeEventLists` field stores a reference to any free event links that have become unused during the processing of events.
freeLinks - Variable in class avrora.sim.clock.DeltaQueue
  The `freeLinks` field stores a reference to any free links that have become unused during the processing of events.
freeze() - Static method in class avrora.util.profiling.Databank
  Freeze all the databases.
freeze() - Method in class avrora.util.profiling.Database
frequency - Variable in class avrora.sim.radio.Radio.Transmission
frontierState - Variable in class avrora.stack.Analyzer.ContextSensitivePolicy
fsm - Variable in class avrora.sim.platform.sensors.LightSensor
func - Variable in class avrora.syntax.Expr.Func

## G

GASParser - class avrora.syntax.gas.GASParser.
GASParser(InputStream, Module, String) - Constructor for class avrora.syntax.gas.GASParser
GASParser(Reader, Module, String) - Constructor for class avrora.syntax.gas.GASParser
GASParser(InputStream) - Constructor for class avrora.syntax.gas.GASParser
GASParser(Reader) - Constructor for class avrora.syntax.gas.GASParser
GASParser(GASParserTokenManager) - Constructor for class avrora.syntax.gas.GASParser
GASParserConstants - interface avrora.syntax.gas.GASParserConstants.
GASParserTokenManager - class avrora.syntax.gas.GASParserTokenManager.
GASParserTokenManager(SimpleCharStream) - Constructor for class avrora.syntax.gas.GASParserTokenManager
GASParserTokenManager(SimpleCharStream, int) - Constructor for class avrora.syntax.gas.GASParserTokenManager
GASProgramReader - class avrora.syntax.gas.GASProgramReader.
  The `GASProgramReader` is an implementation of the `ProgramReader` that reads a source program in the GAS-style syntax and builds a program from it.
GASProgramReader() - Constructor for class avrora.syntax.gas.GASProgramReader
GDBServer - class avrora.monitors.GDBServer.
  The `GDBServer` class implements a monitor that can communicate to gdb via the remote serial protocol (RSP).
GDBServer() - Constructor for class avrora.monitors.GDBServer
  The constructor for the `GDBServer` class simply creates a new instance that is capable of creating monitors for simulators.
GDBServer.GDBMonitor - class avrora.monitors.GDBServer.GDBMonitor.
  The `GDBMonitor` class implements a monitor that can interactively debug a program that is running in Avrora.
GDBServer.GDBMonitor.BreakpointProbe - class avrora.monitors.GDBServer.GDBMonitor.BreakpointProbe.
  The `BreakpointProbe` is a probe inserted at a breakpoint that calls the `commandLoop()` method before the target instruction is executed, thus implementing a breakpoint.
GDBServer.GDBMonitor.BreakpointProbe() - Constructor for class avrora.monitors.GDBServer.GDBMonitor.BreakpointProbe
GDBServer.GDBMonitor.ExceptionWatch - class avrora.monitors.GDBServer.GDBMonitor.ExceptionWatch.
  The `ExceptionWatch` halts execution and signals GDB when an exceptional event occurs.
GDBServer.GDBMonitor.ExceptionWatch() - Constructor for class avrora.monitors.GDBServer.GDBMonitor.ExceptionWatch
GDBServer.GDBMonitor.StartupProbe - class avrora.monitors.GDBServer.GDBMonitor.StartupProbe.
  The `StartupProbe` is a probe inserted at the beginning of the program that will stop the simulation in order to wait for GDB to connect to Avrora.
GDBServer.GDBMonitor.StartupProbe() - Constructor for class avrora.monitors.GDBServer.GDBMonitor.StartupProbe
GDBServer.GDBMonitor.StepProbe - class avrora.monitors.GDBServer.GDBMonitor.StepProbe.
  The `StepProbe` class implements a probe that is used to step by a single instruction.
GDBServer.GDBMonitor.StepProbe() - Constructor for class avrora.monitors.GDBServer.GDBMonitor.StepProbe
GLOBAL - Static variable in interface avrora.syntax.gas.GASParserConstants
GND_LEVEL - Static variable in class avrora.sim.mcu.ADC
GPR_set - Static variable in class avrora.core.Register
GREATER - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
GREATEREQ - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
GROUP_PROCEDURES - Variable in class avrora.actions.CFGAction
GUIAction - class avrora.actions.GUIAction.
  The `VisualAction` class serves as an action that creates an initializes a GUI for Avrora.
GUIAction() - Constructor for class avrora.actions.GUIAction
GUIDefaults - class avrora.gui.GUIDefaults.
  Any and all "random" data that needs to be stored about the GUI or sim is stored here.
GUIDefaults() - Constructor for class avrora.gui.GUIDefaults
GenInterpreter - class avrora.sim.GenInterpreter.
  The `GenInterpreter` class is largely generated from the instruction specification.
GenInterpreter(Simulator, Program, MicrocontrollerProperties) - Constructor for class avrora.sim.GenInterpreter
  The constructor for the `Interpreter` class builds the internal data structures needed to store the complete state of the machine, including registers, IO registers, the SRAM, and the flash.
GenInterpreter.Factory - class avrora.sim.GenInterpreter.Factory.
  The `Factory()` class implements an interpreter factory that can create a new interpreter for a new simulator instance with the given program.
GenInterpreter.Factory() - Constructor for class avrora.sim.GenInterpreter.Factory
GetImage() - Method in class avrora.core.isdl.parser.SimpleCharStream
GetImage() - Method in class avrora.syntax.atmel.SimpleCharStream
GetImage() - Method in class avrora.syntax.gas.SimpleCharStream
GetImage() - Method in class avrora.syntax.objdump.SimpleCharStream
GetImage() - Method in class avrora.test.probes.SimpleCharStream
GetSuffix(int) - Method in class avrora.core.isdl.parser.SimpleCharStream
GetSuffix(int) - Method in class avrora.syntax.atmel.SimpleCharStream
GetSuffix(int) - Method in class avrora.syntax.gas.SimpleCharStream
GetSuffix(int) - Method in class avrora.syntax.objdump.SimpleCharStream
GetSuffix(int) - Method in class avrora.test.probes.SimpleCharStream
GlobalDirective() - Method in class avrora.syntax.gas.GASParser
GraphEvents - class avrora.gui.GraphEvents.
  This is a generic helper class for visual monitors.
GraphEvents(int, int, double) - Constructor for class avrora.gui.GraphEvents
GraphEvents.MyVector - class avrora.gui.GraphEvents.MyVector.
  We don't want to store millions of Integer, but we still want an array that grows...so we define a MyVector class just for that
GraphEvents.MyVector() - Constructor for class avrora.gui.GraphEvents.MyVector
GraphNumbers - class avrora.gui.GraphNumbers.
  The class assists visual monitors with graphing time-series data values.
GraphNumbers(JPanel) - Constructor for class avrora.gui.GraphNumbers
  Called by a visual action that wants this class to help with displaying time series data
generate() - Method in class avrora.core.isdl.gen.ClassGenerator
generate(Arith.BinOp, String) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
generate(Logical.BinOp, String) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
generate() - Method in class avrora.core.isdl.gen.CodemapGenerator
generate() - Method in class avrora.core.isdl.gen.DisassemblerGenerator
generate() - Method in class avrora.core.isdl.gen.DisassemblerTestGenerator
generate() - Method in class avrora.core.isdl.gen.InterpreterGenerator
generateBitRangeWrite(Expr, int, int, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
generateBitRangeWrite(Expr, int, int, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
generateBitRangeWrite(Expr, int, int, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep
generateBitRangeWrite(Expr, int, int, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.MapRep
generateBitRead(Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
generateBitRead(Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
generateBitRead(Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.IORegMap
generateBitRead(Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep
generateBitRead(Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.MapRep
generateBitWrite(Expr, Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
generateBitWrite(Expr, Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
generateBitWrite(Expr, Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.IORegMap
generateBitWrite(Expr, Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep
generateBitWrite(Expr, Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.MapRep
generateBlock(List, String) - Method in class avrora.core.isdl.gen.CodemapGenerator
generateClassForCode(int, List, int) - Method in class avrora.sim.dbbc.DBBC
generateExprList(List) - Method in class avrora.core.isdl.gen.CodemapGenerator
generateHelperMethods() - Method in class avrora.core.isdl.gen.CodemapGenerator
generateParseException() - Method in class avrora.core.isdl.parser.ISDLParser
generateParseException() - Method in class avrora.syntax.atmel.AtmelParser
generateParseException() - Method in class avrora.syntax.gas.GASParser
generateParseException() - Method in class avrora.syntax.objdump.ObjDumpParser
generateParseException() - Method in class avrora.test.probes.ProbeParser
generateRead(Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
generateRead(Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
generateRead(Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep
generateRead(Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.MapRep
generateWrite(Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
generateWrite(Expr, Expr) - Method in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
generateWrite(Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep
generateWrite(Expr, Expr) - Method in class avrora.core.isdl.gen.PrettyPrinter.MapRep
get(int) - Method in class avrora.gui.GraphEvents.MyVector
get(int) - Method in class avrora.sim.Segment
  The `get()` method simply retrieves the value of a byte at a particular location in the segment.
get() - Static method in class avrora.sim.clock.SystemClock
  The `get()` method retrieves the singleton instance of the system clock.
get() - Method in class avrora.sim.mcu.ATMegaFamily.FlagBit
get() - Method in class avrora.util.Option.Bool
  The `get()` method returns the current value of the option.
get() - Method in class avrora.util.Option.Double
  The `get()` method returns the current value of the option.
get() - Method in class avrora.util.Option.List
  The `get()` method returns the current value of the option.
get() - Method in class avrora.util.Option.Long
  The `get()` method returns the current value of the option.
get() - Method in class avrora.util.Option.Str
  The `get()` method returns the current value of the option.
getAction(String) - Static method in class avrora.Defaults
  The `getAction()` method gets the action corresponding to the given name represented as a string.
getActionList() - Static method in class avrora.Defaults
  The `getActionList()` method returns a list of aliases for actions sorted alphabetically.
getAddress() - Method in class avrora.core.ControlFlowGraph.Block
  The `getAddress()` method gets the starting byte address of this basic block.
getAddress(String) - Method in class avrora.core.LabelMapping
  The `getAddress()` method translates a source level name into a machine-code level address.
getAddress(String) - Method in class avrora.core.SourceMapping
  The `getAddress()` method translates a source level name into a machine-code level address.
getAir() - Method in class avrora.sim.radio.CC1000Radio
getAir() - Method in interface avrora.sim.radio.Radio
getAllCategories() - Static method in class avrora.Defaults
getAllOptions() - Method in class avrora.util.Options
getArguments() - Method in class avrora.util.Options
getBeginColumn() - Method in class avrora.core.isdl.parser.SimpleCharStream
getBeginColumn() - Method in class avrora.syntax.atmel.SimpleCharStream
getBeginColumn() - Method in class avrora.syntax.gas.SimpleCharStream
getBeginColumn() - Method in class avrora.syntax.objdump.SimpleCharStream
getBeginColumn() - Method in class avrora.test.probes.SimpleCharStream
getBeginLine() - Method in class avrora.core.isdl.parser.SimpleCharStream
getBeginLine() - Method in class avrora.syntax.atmel.SimpleCharStream
getBeginLine() - Method in class avrora.syntax.gas.SimpleCharStream
getBeginLine() - Method in class avrora.syntax.objdump.SimpleCharStream
getBeginLine() - Method in class avrora.test.probes.SimpleCharStream
getBit(char, int) - Static method in class avrora.stack.AbstractArithmetic
  The `getBit()` method extracts the specified abstract bit from the specified abstract value.
getBit(byte, int) - Static method in class avrora.util.Arithmetic
getBit(long, int) - Static method in class avrora.util.Arithmetic
getBit(int, int) - Static method in class avrora.util.Arithmetic
getBitField(int, int[]) - Static method in class avrora.util.Arithmetic
  The `getBitField()` method reads a bit field from a value where the bits of the field are not consecutive or in order.
getBitField(int, int, int) - Static method in class avrora.util.Arithmetic
getBitRangeMask(int, int) - Static method in class avrora.util.Arithmetic
getBitWidth() - Method in class avrora.core.isdl.EncodingDecl.Derived
getBitWidth() - Method in class avrora.core.isdl.EncodingDecl
getBitWidth() - Method in class avrora.core.isdl.ast.BitExpr
  The `getBitWidth()` method gets the number of bits needed to represent this value.
getBitWidth() - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `getBitWidth()` method gets the number of bits needed to represent this value.
getBitWidth() - Method in class avrora.core.isdl.ast.Expr
  The `getBitWidth()` method gets the number of bits needed to represent this value.
getBitWidth() - Method in class avrora.core.isdl.ast.Literal.IntExpr
  The `getBitWidth()` method returns the known bit size of this expression which is needed in computing the size of an encoding.
getBlockContaining(int) - Method in class avrora.core.ControlFlowGraph
  The `getBlockContaining()` method looks up the basic block that contains the address specified.
getBlockIterator() - Method in class avrora.core.ControlFlowGraph
  The `getBlockIterator()` method constructs an interator over all of the blocks in the control flow graph, regardless of connectivity.
getBlockStartingAt(int) - Method in class avrora.core.ControlFlowGraph
  The `getBlockStartingAt()` method looks up a basic block based on its starting address.
getByteAddress() - Method in class avrora.syntax.Item.Label
getCFG() - Method in class avrora.core.Program
  The `getCFG()` method returns a reference to the control flow graph of the program.
getCachedState(MutableState) - Method in class avrora.stack.StateTransitionGraph
  The `getCachedState()` method looks for the a cached, immutable state that corresponds to the given mutable state.
getCategory(String) - Static method in class avrora.util.help.HelpSystem
  The `getCategory()` method gets a help category for the specified short name.
getClass(String) - Method in class avrora.util.ClassMap
  The `getClass()` method gets the Java class representing the class returned for a given short name.
getClassName() - Method in class avrora.core.isdl.InstrDecl
getClock() - Method in class avrora.sim.FiniteStateMachine
  The `getClock()` method gets the underlying clock driving the device.
getClock() - Method in class avrora.sim.Simulator
  The `getClock()` method gets a reference to the `Clock` that this simulator is driving.
getClock(String) - Method in class avrora.sim.clock.ClockDomain
  The `getClock()` method looks for a clock with the specified name in this clock domain.
getClock() - Method in class avrora.sim.mcu.AtmelInternalDevice
getClock(String) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getClock()` method gets a reference to a specific clock on this device.
getClockDomain() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getClockDomain()` method gets a reference to the `ClockDomain` instance for this node that contains the main clock and any derived clocks for this microcontroller.
getClockDomain() - Method in interface avrora.sim.mcu.Microcontroller
  The `getClockDomain()` method returns the clock domain for this microcontroller.
getCode() - Method in class avrora.core.isdl.CodeRegion
getCodeBlock(int) - Method in class avrora.sim.dbbc.DBBC
getCodeForInstr(int, Instr) - Static method in class avrora.sim.dbbc.CodeMap
getColumn() - Method in class avrora.core.isdl.parser.SimpleCharStream
  Deprecated.
getColumn() - Method in class avrora.syntax.atmel.SimpleCharStream
  Deprecated.
getColumn() - Method in class avrora.syntax.gas.SimpleCharStream
  Deprecated.
getColumn() - Method in class avrora.syntax.objdump.SimpleCharStream
  Deprecated.
getColumn() - Method in class avrora.test.probes.SimpleCharStream
  Deprecated.
getCompiledBlock(int) - Method in class avrora.sim.dbbc.DBBC
  The `getCompiledBlock()` method instructs the DBBC to compile the basic block that begins at the specified byte address.
getCompiledBlock(DBBC.CodeBlock) - Method in class avrora.sim.dbbc.DBBC
getCond() - Method in class avrora.core.isdl.EncodingDecl
getConsumedEnergy(int) - Method in class avrora.sim.energy.Energy
  get the power consumption of a state
getConsumers() - Method in class avrora.sim.energy.EnergyControl.Instance
  get list of consumers
getCount() - Method in class avrora.sim.clock.Clock
  The `getCount()` method returns the number of clock cycles (ticks) that have elapsed for this clock.
getCount() - Method in class avrora.sim.clock.ClockPrescaler
  The `getCount()` method returns the number of clock cycles (ticks) that have elapsed for this clock.
getCount() - Method in class avrora.sim.clock.DeltaQueue
  The `getCount()` gets the total cumulative count of all the `advance()` calls on this delta queue.
getCount() - Method in class avrora.sim.clock.DerivedClock
  The `getCount()` method returns the total count of clock ticks that have happened for this clock.
getCount() - Method in class avrora.sim.clock.MainClock
  The `getCount()` method returns the number of clock cycles (ticks) that have elapsed for this clock.
getCount() - Method in class avrora.sim.clock.SystemClock
  The `getCount()` method returns the number of clock cycles (ticks) that have elapsed for this clock.
getCurrentAddress() - Method in class avrora.syntax.Module.Seg
getCurrentAmpere() - Method in class avrora.sim.energy.Energy
  get the current draw
getCurrentInstance() - Static method in class avrora.sim.energy.EnergyControl
getCurrentMode() - Method in class avrora.sim.energy.Energy
  get the current state or mode of the device
getCurrentState() - Method in class avrora.sim.FiniteStateMachine
  The `getCurrentState()` method returns an integer that represents the state that the machine is currently in.
getCurrentStateName() - Method in class avrora.sim.FiniteStateMachine
  The `getCurrentStateName()` method retrieves the name for the current state.
getCycles() - Method in class avrora.core.Instr
  The `getCycles()` method returns the number of cylces consumed by the instruction in the default case.
getCycles() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getCycles()` method returns the clock cycle count recorded so far in the simulation.
getCycles() - Method in interface avrora.sim.State
  The `getCycles()` method returns the clock cycle count recorded so far in the simulation.
getCycles(int) - Method in class avrora.sim.energy.Energy
  get the cycles spend in a device state
getDataByte(int) - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getDataByte()` method reads a byte value from the data memory (SRAM) at the specified address.
getDataByte(int) - Method in class avrora.sim.BaseInterpreter
  The `getDataByte()` method reads a byte value from the data memory (SRAM) at the specified address.
getDataByte(int) - Method in interface avrora.sim.State
  The `getDataByte()` method reads a byte value from the data memory (SRAM) at the specified address.
getDevice(String) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getDevice()` method is used to get a reference to an internal device with the given name.
getDevice(String) - Method in class avrora.sim.platform.Platform
  The `getDevice()` method looks up a device attached to this platform.
getEIFR_reg() - Method in class avrora.sim.mcu.ATMegaFamily
  The getEIFR_reg() method is used to access the external interrupt flag register.
getEdenState() - Method in class avrora.stack.StateCache
  The `getEdenState()` method gets the starting state of the abstract interpretation.
getEdenState() - Method in class avrora.stack.StateTransitionGraph
getEdgeCount() - Method in class avrora.stack.StateTransitionGraph
getEdgeIterator() - Method in class avrora.core.ControlFlowGraph.Block
getEdgeIterator() - Method in class avrora.core.ControlFlowGraph
  The `getEdgeIterator()` method returns an interator over all edges between all blocks within this control flow graph.
getElement(int) - Method in class avrora.stack.isea.ISEAbstractState
getEnabledInterrupts() - Method in class avrora.sim.InterruptTable
  The `getEnabledInterrupts()` method returns a long integer that represents a bit map of which interrupts are currently enabled, meaning not masked out.
getEncodingIterator() - Method in class avrora.core.isdl.Architecture
getEncodingSize() - Method in class avrora.core.isdl.InstrDecl
getEndColumn() - Method in class avrora.core.isdl.parser.SimpleCharStream
getEndColumn() - Method in class avrora.syntax.atmel.SimpleCharStream
getEndColumn() - Method in class avrora.syntax.gas.SimpleCharStream
getEndColumn() - Method in class avrora.syntax.objdump.SimpleCharStream
getEndColumn() - Method in class avrora.test.probes.SimpleCharStream
getEndLine() - Method in class avrora.core.isdl.parser.SimpleCharStream
getEndLine() - Method in class avrora.syntax.atmel.SimpleCharStream
getEndLine() - Method in class avrora.syntax.gas.SimpleCharStream
getEndLine() - Method in class avrora.syntax.objdump.SimpleCharStream
getEndLine() - Method in class avrora.test.probes.SimpleCharStream
getErrorClass() - Method in class avrora.syntax.SimplifierError
getErrorParams() - Method in class avrora.syntax.SimplifierError
getExploredCount() - Method in class avrora.stack.StateTransitionGraph
getExtent(int, long) - Method in class avrora.gui.TimeScale
getFSM() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getFSM()` method gets a reference to the finite state machine that represents the sleep modes of the MCU.
getFSM() - Method in class avrora.sim.platform.LED
  The `getFSM()` method returns the `FiniteStateMachine` instance corresponding to this LED.
getField(String) - Method in class avrora.sim.mcu.RegisterSet
  The `getField()` gets an object that represents an entire field which may be stored across multiple registers in multiple bit fields.
getFileName() - Method in class avrora.test.TestCase
getFiniteStateMachine() - Method in class avrora.sim.radio.CC1000Radio
  The `getFiniteStateMachine()` method gets a reference to the finite state machine that represents this radio's state.
getFiniteStateMachine() - Method in interface avrora.sim.radio.Radio
  The `getFiniteStateMachine()` method gets a reference to the finite state machine that represents this radio's state.
getFirstEventDelta() - Method in class avrora.sim.clock.MainClock
  The `getFirstEventDelta()` method returns the number of clock cycles until the first event in the event queue will fire.
getFirstEventDelta() - Method in class avrora.sim.clock.SystemClock
  The `getFirstEventDelta()` method returns the number of clock cycles until the first event in the event queue will fire.
getFirstEventTime() - Method in class avrora.sim.clock.DeltaQueue
  The `getHeadDelta()` method gets the number of clock cycles until the first event will fire.
getFirstUnknownOption() - Method in class avrora.util.Options
getFlag_C() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_C()` method returns the current value of the C bit in the status register as a boolean.
getFlag_C() - Method in interface avrora.sim.State
  The `getFlag_C()` method returns the current value of the C bit in the status register as a boolean.
getFlag_C() - Method in class avrora.stack.AbstractState
  The `getFlag_C()` method returns the abstract value of the C flag.
getFlag_H() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_H()` method returns the current value of the H bit in the status register as a boolean.
getFlag_H() - Method in interface avrora.sim.State
  The `getFlag_H()` method returns the current value of the H bit in the status register as a boolean.
getFlag_H() - Method in class avrora.stack.AbstractState
  The `getFlag_H()` method returns the abstract value of the H flag.
getFlag_I() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_I()` method returns the current value of the I bit in the status register as a boolean.
getFlag_I() - Method in interface avrora.sim.State
  The `getFlag_I()` method returns the current value of the I bit in the status register as a boolean.
getFlag_I() - Method in class avrora.stack.AbstractState
  The `getFlag_I()` method returns the abstract value of the I flag.
getFlag_N() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_N()` method returns the current value of the N bit in the status register as a boolean.
getFlag_N() - Method in interface avrora.sim.State
  The `getFlag_N()` method returns the current value of the N bit in the status register as a boolean.
getFlag_N() - Method in class avrora.stack.AbstractState
  The `getFlag_N()` method returns the abstract value of the N flag.
getFlag_S() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_S()` method returns the current value of the S bit in the status register as a boolean.
getFlag_S() - Method in interface avrora.sim.State
  The `getFlag_S()` method returns the current value of the S bit in the status register as a boolean.
getFlag_S() - Method in class avrora.stack.AbstractState
  The `getFlag_S()` method returns the abstract value of the S flag.
getFlag_T() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_T()` method returns the current value of the T bit in the status register as a boolean.
getFlag_T() - Method in interface avrora.sim.State
  The `getFlag_T()` method returns the current value of the T bit in the status register as a boolean.
getFlag_T() - Method in class avrora.stack.AbstractState
  The `getFlag_T()` method returns the abstract value of the T flag.
getFlag_V() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_V()` method returns the current value of the V bit in the status register as a boolean.
getFlag_V() - Method in interface avrora.sim.State
  The `getFlag_V()` method returns the current value of the V bit in the status register as a boolean.
getFlag_V() - Method in class avrora.stack.AbstractState
  The `getFlag_V()` method returns the abstract value of the V flag.
getFlag_Z() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getFlag_Z()` method returns the current value of the Z bit in the status register as a boolean.
getFlag_Z() - Method in interface avrora.sim.State
  The `getFlag_Z()` method returns the current value of the Z bit in the status register as a boolean.
getFlag_Z() - Method in class avrora.stack.AbstractState
  The `getFlag_Z()` method returns the abstract value of the Z flag.
getFraction() - Method in class avrora.util.profiling.Proportion.Share
getFractionForName(String) - Method in class avrora.util.profiling.Proportion
  Search for the counter with the specified name and report its proportion.
getFrequency() - Method in class avrora.sim.radio.CC1000Radio
  get transmission frequency
getFrequency() - Method in interface avrora.sim.radio.Radio
  get the current frequency
getFrontierCount() - Method in class avrora.stack.StateTransitionGraph
getGraph() - Method in interface avrora.gui.VisualMonitor
  This is a temporary hack...once Global Monitors is rewritten to be more robust, this will be deleted
getGraph() - Method in class avrora.gui.VisualRadioMonitor.VisualMonitor
getGraph() - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
getHZ() - Method in class avrora.sim.clock.Clock
  The `getHZ()` method returns the number of cycles per second at which this clock runs.
getHZ() - Method in class avrora.sim.mcu.ATMegaFamily
  The `getHZ()` method returns the number of cycles per second at which this hardware device is designed to run.
getHZ() - Method in interface avrora.sim.mcu.Microcontroller
  The `getHZ()` method returns the number of cycles per second at which this hardware device is designed to run.
getHelp() - Method in class avrora.util.help.ClassMapValueItem
  The `getHelp()` method returns a help string for this help item.
getHelp() - Method in class avrora.util.help.HelpCategory
  The `getHelp()` method returns a string representing help for this help item.
getHelp() - Method in interface avrora.util.help.HelpItem
  The `getHelp()` method returns a string that is suitable to being formatted into a single paragraph.
getHelp() - Method in class avrora.util.help.SubcategoryItem
  The `getHelp()` method returns the help string of the underlying help category.
getHelp() - Method in class avrora.util.help.ValueItem
  The `getHelp()` method returns a help string for this help item.
getHelpCategory(String) - Static method in class avrora.Defaults
getHigh() - Method in class avrora.util.Option.Interval
  The `getHigh()` method returns the current highest value of the interval for this option.
getHorzBarValue() - Method in class avrora.gui.GraphEvents
  used by paint so it knows what value to start painting with
getID() - Method in class avrora.sim.Simulator
  The `getID()` method simply returns this node's unique ID.
getIDTimeString(Simulator) - Static method in class avrora.util.StringUtil
getIDTimeString(StringBuffer, Simulator) - Static method in class avrora.util.StringUtil
getIOReg(int) - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getIOReg()` method is used to retrieve a reference to the actual `IOReg` instance stored internally in the state.
getIOReg(int) - Method in class avrora.sim.BaseInterpreter
  The `getIOReg()` method is used to retrieve a reference to the actual `IOReg` instance stored internally in the state.
getIOReg(int) - Method in interface avrora.sim.State
  The `getIOReg()` method is used to retrieve a reference to the actual `IOReg` instance stored internally in the state.
getIOReg(String) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getIOReg()` method gets a reference to the active register currently installed for the specified name.
getIOReg(String) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `getIOReg()` method retrieves the IO register number for the given IO Register name for this microcontroller.
getIOReg(String) - Method in class avrora.sim.mcu.RegisterLayout
  The `getIOReg()` method retrieves the IO register number for the given IO Register name for this microcontroller.
getIORegName(int) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `getIORegName()` method returns the name of the IO register specified by the given number.
getIORegisterAV(int) - Method in class avrora.stack.AbstractState
  The `getIORegisterByte()` method reads the abstract value of an IO register from the abstract state.
getIORegisterByte(int) - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getIORegisterByte()` method reads the value of an IO register.
getIORegisterByte(int) - Method in class avrora.sim.BaseInterpreter
  The `getIORegisterByte()` method reads the value of an IO register.
getIORegisterByte(int) - Method in interface avrora.sim.State
  The `getIORegisterByte()` method reads the value of an IO register.
getIORegs() - Method in class avrora.sim.mcu.AtmelInternalDevice
getIndirectEdges(int) - Method in class avrora.core.Program
  The `getIndirectEdges` returns a list of integers representing the possible target program locations for a given callsite.
getInnerClassName() - Method in class avrora.core.isdl.InstrDecl
getInstr(int) - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getInstr()` can be used to retrieve a reference to the `Instr` object representing the instruction at the specified program address.
getInstr(int) - Method in class avrora.sim.BaseInterpreter
  The `getInstr()` can be used to retrieve a reference to the `Instr` object representing the instruction at the specified program address.
getInstr(int) - Method in class avrora.sim.CodeSegment
  The `getInstr()` method reads an Instr from the specified address in the flash.
getInstr(int) - Method in interface avrora.sim.State
  The `getInstr()` can be used to retrieve a reference to the `Instr` object representing the instruction at the specified program address.
getInstrIterator() - Method in class avrora.core.ControlFlowGraph.Block
  The `getInstrIterator()` method returns an iterator over the instructions in this basic block.
getInstrIterator() - Method in class avrora.core.isdl.Architecture
getInstrSize(int) - Method in class avrora.sim.BaseInterpreter
  The `getInstrSize()` method reads the size of the instruction at the given program address.
getInstruction(String) - Method in class avrora.core.isdl.Architecture
getInterpreter() - Method in class avrora.sim.Simulator
  The `getInterpreter()` method returns the interpreter that is currently attached to this simulator.
getInterpreterFactory() - Static method in class avrora.Defaults
getInterrupt(String) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `getInterrupt()` method retrieves the interrupt number for the given interrupt name for this microcontroller
getInterruptBase() - Method in class avrora.sim.BaseInterpreter
  The `getInterruptBase()` method returns the base address of the interrupt table.
getInterruptName(int) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `getInterruptName()` method returns the name of an interrupt specified by the given number.
getInterruptTable() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getInterruptTable()` method gets a reference to the interrupt table, which contains information about each interrupt, such as whether it is enabled, posted, pending, etc.
getInterruptTable() - Method in class avrora.sim.BaseInterpreter
  The `getInterruptTable()` method returns a reference to the interrupt table for this interpreter.
getInterruptTable() - Method in interface avrora.sim.State
  The `getInterruptTable()` method gets a reference to the interrupt table, which contains information about each interrupt, such as whether it is enabled, posted, pending, etc.
getInterruptVectorAddress(int) - Method in class avrora.sim.BaseInterpreter
  The `getInterruptVectorAddress()` method computes the location in memory to jump to for the given interrupt number.
getInverseBitRangeMask(int, int) - Static method in class avrora.util.Arithmetic
getIterator() - Method in class avrora.util.ClassMap
  The `getIterator()` method returns an interator over all of the key values (short names or aliases) of this class map.
getLabel(String) - Method in class avrora.core.Program
  The `getLabel()` method searches for a label with a given name within the program, in any section.
getLabels() - Method in class avrora.core.Program
getLast() - Method in class avrora.gui.GraphEvents.MyVector
getLastAddress() - Method in class avrora.core.ControlFlowGraph.Block
  The `getLastAddress()` gets the last address that this block covers.
getLastTime() - Method in class avrora.util.profiling.TimedMeasurements
  The `getLastTime()` method returns the time when the last measurement was recorded.
getLeftMostToken() - Method in class avrora.syntax.ASTNode
  The `getLeftMostToken()` method gets the first token associated with the abstract syntax tree node.
getLeftMostToken() - Method in class avrora.syntax.Expr.BinOp
getLeftMostToken() - Method in class avrora.syntax.Expr.Func
getLeftMostToken() - Method in class avrora.syntax.Expr.RelativeAddress
getLeftMostToken() - Method in class avrora.syntax.Expr.Term
getLeftMostToken() - Method in class avrora.syntax.Expr.UnOp
getLeftMostToken() - Method in class avrora.syntax.ExprList
getLeftMostToken() - Method in class avrora.syntax.SyntacticOperand
getLength() - Method in class avrora.core.ControlFlowGraph.Block
  The `getLength()` returns the length of this basic block in terms of the number of instructions
getLevel() - Method in interface avrora.sim.mcu.ADC.ADCInput
  Report the current voltage level of the input.
getLevel() - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
getLine() - Method in class avrora.core.isdl.parser.SimpleCharStream
  Deprecated.
getLine() - Method in class avrora.syntax.atmel.SimpleCharStream
  Deprecated.
getLine() - Method in class avrora.syntax.gas.SimpleCharStream
  Deprecated.
getLine() - Method in class avrora.syntax.objdump.SimpleCharStream
  Deprecated.
getLine() - Method in class avrora.test.probes.SimpleCharStream
  Deprecated.
getLocation(String) - Method in class avrora.core.LabelMapping
  The `getLocation() method retrieves an object that represents a location for the given name, if the name exists in the program.`
getLocation(String) - Method in class avrora.core.SourceMapping
getLocationList(Program, List) - Static method in class avrora.actions.SimAction
  The `getLocationList()` method is to used to parse a list of program locations and turn them into a list of `Main.Location` instances.
getLow() - Method in class avrora.util.Option.Interval
  The `getLow()` method returns the current lowest value of the interval for this option.
getMainCategories() - Static method in class avrora.Defaults
getMainClock() - Method in class avrora.sim.BaseInterpreter
  The `getMainClock()` method returns a reference to the main clock for this interpreter.
getMainClock() - Method in class avrora.sim.clock.ClockDomain
  The `getMainClock()` method returns the main clock for this clock domain.
getMapRep(String) - Method in class avrora.core.isdl.gen.InterpreterGenerator
getMapRep(String) - Method in class avrora.core.isdl.gen.PrettyPrinter
getMaxZoom() - Method in class avrora.gui.TimeScale
getMessage() - Method in class avrora.core.isdl.parser.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in class avrora.core.isdl.parser.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class avrora.syntax.atmel.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in class avrora.syntax.atmel.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class avrora.syntax.gas.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in class avrora.syntax.gas.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class avrora.syntax.objdump.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in class avrora.syntax.objdump.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMessage() - Method in class avrora.test.probes.ParseException
  This method has the standard behavior when this object has been created using the standard constructors.
getMessage() - Method in class avrora.test.probes.TokenMgrError
  You can also modify the body of this method to customize your error messages.
getMethod(String) - Method in class avrora.core.isdl.gen.PrettyPrinter
getMethod(String) - Method in class avrora.sim.dbbc.DBBC.CodeGenerator
getMicrocontroller(String) - Static method in class avrora.Defaults
  The `getMicrocontroller()` method gets the microcontroller factory corresponding to the given name represented as a string.
getMicrocontroller() - Method in class avrora.sim.Simulator
  The `getMicrocontroller()` method gets a reference to the microcontroller being simulated.
getMicrocontroller() - Method in class avrora.sim.platform.Platform
  The `getMicrocontroller()` method returns a reference to the microcontroller that is driving this platform.
getMode() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getMode()` method returns the current sleep mode of the MCU.
getMode() - Method in interface avrora.sim.mcu.Microcontroller
  Deprecated. this method should no longer be used; eventually this state information should be exposed through a FiniteStateMachine object
getModeAmpere(int) - Method in class avrora.sim.energy.Energy
  get the current draw of a mode
getModeName(int) - Method in class avrora.sim.energy.Energy
  get the name of a mode
getModeName() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  get the name of the current mode
getModeName() - Method in interface avrora.sim.mcu.Microcontroller
  Deprecated. this method should no longer be used; eventually this state information should be exposed through a FiniteStateMachine object
getModeNumber() - Method in class avrora.sim.energy.Energy
  get the number of modes of this device
getModule() - Method in class avrora.syntax.Module.Seg
getMonitor(String) - Static method in class avrora.Defaults
  The `getMonitor()` method gets the monitor corresponding to the given name represented as a string.
getMonitor(String) - Static method in class avrora.gui.GUIDefaults
getMonitorList() - Method in class avrora.gui.AvroraGui
  Gets all monitors attached to the simulator.
getMonitorList() - Static method in class avrora.gui.GUIDefaults
getMonitors() - Method in class avrora.sim.Simulation.Node
  The `getMonitors()` method gets a list of monitors that are attached to this node.
getName() - Method in class avrora.core.Instr
  The `getName()` method returns the name of the instruction as a string.
getName() - Method in interface avrora.core.InstrPrototype
  The `getName()` method returns the name of the instruction as a string.
getName(int) - Method in class avrora.core.LabelMapping
  The `getName()` method translates a code address into a name that is more useful to the user, such as a label.
getName() - Method in class avrora.core.LoadableProgram
  The `getName()` method returns the name of the program, i.e. the name of the file containing the program.
getName() - Method in class avrora.core.Register
  The `getName()` method returns the name of the instruction as a string.
getName(int) - Method in class avrora.core.SourceMapping
  The `getName()` method translates a code address into a name that is more useful to the user, such as a label, a location in a method, a location in a module and the source line, etc.
getName() - Method in class avrora.sim.clock.Clock
  The `getName()` method returns the name of this clock source.
getName() - Method in class avrora.sim.energy.Energy
  get the device name
getName() - Method in class avrora.syntax.Module.Seg
getName() - Method in class avrora.util.Option
  The `getName()` method returns the string name of the option.
getName() - Method in class avrora.util.help.HelpCategory
  The `getName()` method returns the short name for this help category.
getName() - Method in class avrora.util.profiling.DataItem
getNeighbors() - Method in class avrora.sim.radio.freespace.LocalAirImpl
  tell me, who is around
getNextFrontierState() - Method in class avrora.stack.StateTransitionGraph
  The `getNextFrontierState()` chooses a state off of the state frontier, removes it from the state frontier, and returns it.
getNextPC(int) - Method in class avrora.core.Program
  The `getNextPC()` method computes the program counter value of the next instruction following the instruction referenced by the given program counter value.
getNextToken() - Method in class avrora.core.isdl.parser.ISDLParser
getNextToken() - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
getNextToken() - Method in class avrora.core.isdl.parser.Token
getNextToken() - Method in class avrora.syntax.AbstractToken
getNextToken() - Method in class avrora.syntax.atmel.AtmelParser
getNextToken() - Method in class avrora.syntax.atmel.AtmelParserTokenManager
getNextToken() - Method in class avrora.syntax.atmel.Token
getNextToken() - Method in class avrora.syntax.gas.GASParser
getNextToken() - Method in class avrora.syntax.gas.GASParserTokenManager
getNextToken() - Method in class avrora.syntax.gas.Token
getNextToken() - Method in class avrora.syntax.objdump.ObjDumpParser
getNextToken() - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
getNextToken() - Method in class avrora.syntax.objdump.Token
getNextToken() - Method in class avrora.test.probes.ProbeParser
getNextToken() - Method in class avrora.test.probes.ProbeParserTokenManager
getNode(int) - Method in class avrora.sim.Simulation
  The `getNode()` method gets a reference to the node with the specified id number.
getNode() - Method in class avrora.sim.SimulatorThread
  The `getNode()` method gets a reference to the `Simulation.Node` that this simulator thread is simulating.
getNodeIterator() - Method in class avrora.sim.Simulation
  The `getNodeIterator()` method returns an iterator over all of the nodes of the simulation.
getNodeName() - Method in class avrora.sim.radio.freespace.Position
  get node name
getNumber() - Method in class avrora.core.Register
  The `getNumber()` method returns the "number" of this register, meaning the offset into the register file.
getNumberOfInterrupts() - Method in class avrora.sim.InterruptTable
  The `getNumberOfInterrupts()` method returns the number of interrupts in this interrupt table.
getNumberOfNodes() - Method in class avrora.sim.Simulation
  The `getNumberOfNodes()` method returns the number of nodes in this simulation.
getNumberOfStates() - Method in class avrora.sim.FiniteStateMachine
  The `getNumberOfStates()` method returns the total number of states that this machine has.
getObjectOfClass(String) - Method in class avrora.util.ClassMap
  The `getObjectOfClass()` method looks up the string name of the class in the alias map first, and if not found, attempts to load the class using `Class.forName()` and instantiates one object.
getOldAmpere() - Method in class avrora.sim.energy.Energy
  get the current draw of the old mode
getOldMode() - Method in class avrora.sim.energy.Energy
  get old mode
getOperandDecl(String) - Method in class avrora.core.isdl.Architecture
getOperandDecl() - Method in class avrora.core.isdl.CodeRegion.Operand
getOperandIterator() - Method in class avrora.core.isdl.CodeRegion
getOperands() - Method in class avrora.core.Instr.IMMIMM_class
getOperands() - Method in class avrora.core.Instr.IMMREG_class
getOperands() - Method in class avrora.core.Instr.IMMWORD_class
getOperands() - Method in class avrora.core.Instr.IMM_class
getOperands() - Method in class avrora.core.Instr.NONE_class
getOperands() - Method in class avrora.core.Instr.REGIMMREG_class
getOperands() - Method in class avrora.core.Instr.REGIMM_class
getOperands() - Method in class avrora.core.Instr.REGREGIMM_class
getOperands() - Method in class avrora.core.Instr.REGREG_class
getOperands() - Method in class avrora.core.Instr.REG_class
getOperands() - Method in class avrora.core.Instr.WORD_class
getOperands() - Method in class avrora.core.Instr
  The `getOperands()` method returns a string representation of the operands of the instruction.
getOperands() - Method in class avrora.core.isdl.CodeRegion
getOperands() - Method in class avrora.sim.CodeSegment.ProbedInstr
getOperands() - Method in class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr
getOption(String) - Method in class avrora.util.Options
getOptionList() - Method in class avrora.gui.AvroraGui
  Gets all options for the GUI and simulator.
getOptionList() - Static method in class avrora.gui.GUIDefaults
getOptionValue(String) - Method in class avrora.util.Options
getOptionsPanel() - Method in class avrora.gui.GraphEvents
  This function creates the actual options panel that can be displayed.
getOptionsPanel() - Method in class avrora.gui.GraphNumbers
  This function returns a panel that has all the visual options aligned in a column
getPC() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getPC()` retrieves the current program counter.
getPC() - Method in class avrora.sim.BaseInterpreter
  The `getPC()` retrieves the current program counter.
getPC() - Method in interface avrora.sim.State
  The `getPC()` retrieves the current program counter.
getPC() - Method in class avrora.stack.AbstractState
  The `getPC()` method returns the concrete value of the program counter.
getParam() - Method in class avrora.Avrora.Error
getPendingInterrupts() - Method in class avrora.sim.InterruptTable
  The `getPendingInterrupts()` method returns a long integer that represents a bit map of which interrupts are currently pending, meaning they are both posted and enabled.
getPin(int) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getPin()` method looks up the specified pin by its number and returns a reference to that pin.
getPin(String) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getPin()` method looks up the named pin and returns a reference to that pin.
getPin(String) - Method in interface avrora.sim.mcu.Microcontroller
  The `getPin()` method looks up the named pin and returns a reference to that pin.
getPin(int) - Method in interface avrora.sim.mcu.Microcontroller
  The `getPin()` method looks up the specified pin by its number and returns a reference to that pin.
getPin(String) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `getPin()` method retrieves the pin number for the given pin name for this microcontroller.
getPinNumber(String) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getPinNumber()` method gets the pin number (according to the pin assignments) for the pin with the specified name.
getPinNumber(String) - Method in interface avrora.sim.mcu.Microcontroller
  The `getPinNumber()` method looks up the named pin and returns its number.
getPlatform(String) - Static method in class avrora.Defaults
  The `getPlatform()` method gets the platform factory corresponding to the given name represented as a string.
getPlatform() - Method in class avrora.sim.Simulation
  The `getPlatform()` method is a helper method for extensions of the `Simulation` class.
getPlatform() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getPlatform()` method returns the platform for this microcontroller.
getPlatform() - Method in interface avrora.sim.mcu.Microcontroller
  The `getPlatform()` method gets a platform instance that contains this microcontroller.
getPosition() - Method in class avrora.gui.TimeScale
getPosition() - Method in class avrora.sim.radio.freespace.LocalAirImpl
  get node position
getPosition(int) - Method in class avrora.sim.radio.freespace.Topology
getPostedInterrupts() - Method in class avrora.sim.InterruptTable
  The `getPostedInterrupts()` method returns a long integer that represents a bit map of which interrupts are currently posted.
getPower() - Method in class avrora.sim.radio.CC1000Radio.PA_POWRegister
getPower() - Method in class avrora.sim.radio.CC1000Radio
  get the transmission power
getPower() - Method in interface avrora.sim.radio.Radio
  get the transmission power
getPrecedence() - Method in class avrora.core.isdl.ast.Arith.BinOp
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.Arith.UnOp
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.BitExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.CallExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.ConversionExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.Expr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.Literal.BoolExpr
getPrecedence() - Method in class avrora.core.isdl.ast.Literal.IntExpr
getPrecedence() - Method in class avrora.core.isdl.ast.Logical.BinOp
getPrecedence() - Method in class avrora.core.isdl.ast.Logical.UnOp
getPrecedence() - Method in class avrora.core.isdl.ast.MapExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrecedence() - Method in class avrora.core.isdl.ast.VarExpr
  The `getPrecedence()` method gets the binding precedence for this expression.
getPrinter(String) - Method in class avrora.sim.Simulator
  The `getPrinter()` method returns a `Simulator.Printer` instance for the named verbose channel.
getPriority() - Method in class avrora.core.isdl.EncodingDecl
getProcedureBlocks(ControlFlowGraph.Block) - Method in class avrora.core.ProcedureMap
  The `getProcedureBlocks()` method returns the collection of basic blocks contained in the procedure with the specified entrypoint.
getProcedureContaining(ControlFlowGraph.Block) - Method in class avrora.core.ProcedureMap
  The `getProcedureContaining()` method looks up the entrypoint of the procedure that contains this basic block.
getProcedureEntrypoints() - Method in class avrora.core.ProcedureMap
  The `getProcedureEntrypoints()` method returns a collection of basic blocks that are entrypoints of procedures in the control flow graph.
getProcedureMap() - Method in class avrora.core.ControlFlowGraph
  The `getProcedureMap()` method returns a reference to a `ProcedureMap` instance that maps basic blocks to the procedures in which they are contained
getProcedureSummary(int) - Method in class avrora.stack.isea.ISEAnalyzer
getProcedureSummary(int) - Method in interface avrora.stack.isea.ISEInterpreter.SummaryCache
getProgram() - Method in class avrora.core.LoadableProgram
  The `getProgram()` method gets the current representation of the program stored in this object.
getProgram() - Method in class avrora.core.SourceMapping
  The `getProgram()` class returns a reference to the program for which this class provides source information.
getProgram() - Method in class avrora.sim.Simulation.Node
  The `getProgram()` method return a reference to the loadable program for this node.
getProgram() - Method in class avrora.sim.Simulator
  The `getProgram()` method gets a reference to the program that has been loaded onto this simulator.
getProgram() - Method in class avrora.sim.dbbc.DBBC
getProgramByte(int) - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getProgramByte()` method reads a byte value from the program (Flash) memory.
getProgramByte(int) - Method in class avrora.sim.BaseInterpreter
  The `getProgramByte()` method reads a byte value from the program (Flash) memory.
getProgramByte(int) - Method in interface avrora.sim.State
  The `getProgramByte()` method reads a byte value from the program (Flash) memory.
getProgramLocation(String) - Method in class avrora.core.Program
  The `getProgramLocation()` method will convert the specified string into a program location, i.e. a location in the program segment.
getProgramReader(String) - Static method in class avrora.Defaults
  The `getProgramReader()` method gets the program reader corresponding to the given name represented as a string.
getProgramReaderList() - Static method in class avrora.Defaults
  The `getProgramReaderList()` method returns a list of aliases for program readers sorted alphabetically.
getProperties() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getProperties()` method gets a reference to the microcontroller properties for this microcontroller instance.
getProperties() - Method in interface avrora.sim.mcu.Microcontroller
  The `getProperties()` method gets an object that describes the microcontroller including the size of the RAM, EEPROM, flash, etc.
getPrototype(String) - Static method in class avrora.core.InstructionSet
  The `getPrototype()` method looks up the prototype for the given instruction name and returns it.
getRadio() - Method in class avrora.sim.radio.freespace.LocalAirImpl
getRandom() - Method in class avrora.sim.Simulation
  The `getRandom()` method returns a reference to a random number generator that is used in the simulation.
getReadCount(int, int) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `getReadCount()` method returns the number of times the specified instruction read the specified memory address.
getRegister() - Method in interface avrora.core.Operand.Register
  The `getRegister()` method returns a reference to the register represented by this operand.
getRegister(String) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
getRegister(Register) - Method in class avrora.stack.isea.ISEInterpreter
getRegister(Register) - Method in class avrora.stack.isea.ISEState
getRegister(AbstractToken) - Method in interface avrora.syntax.Context
  The `getRegister()` method resolves a register that may have been renamed earlier in the program.
getRegister(AbstractToken) - Method in class avrora.syntax.Module
getRegister() - Method in class avrora.syntax.SyntacticOperand.Register
getRegisterAV(Register) - Method in class avrora.stack.AbstractState
  The `getRegisterByte()` method reads the abstract value of a register in the abstract state.
getRegisterAV(int) - Method in class avrora.stack.AbstractState
getRegisterByName(String) - Static method in class avrora.core.Register
  The `getRegisterByName()` method retrieves a reference to the `Register` instance with the given string name.
getRegisterByNumber(int) - Static method in class avrora.core.Register
  The `getRegisterByNumber()` method retrieves a reference to the `Register` instance with the given offset in the register file.
getRegisterByte(Register) - Method in class avrora.sim.BaseInterpreter.StateImpl
  Read a general purpose register's current value as a byte.
getRegisterByte(Register) - Method in class avrora.sim.BaseInterpreter
  Read a general purpose register's current value as a byte.
getRegisterByte(int) - Method in class avrora.sim.BaseInterpreter
getRegisterByte(Register) - Method in interface avrora.sim.State
  Read a general purpose register's current value as a byte.
getRegisterLayout() - Method in class avrora.sim.mcu.MicrocontrollerProperties
getRegisterLayout() - Method in class avrora.sim.mcu.RegisterSet
  The `getRegisterLayout()` method gets a reference to the register layout object for this register set.
getRegisterSet() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getRegisterSet()` method gets a reference to the register set of the microcontroller.
getRegisterSet() - Method in interface avrora.sim.mcu.Microcontroller
  The `getRegisterSet()` method returns the register set containing all of the IO registers for this microcontroller.
getRegisterUnsigned(Register) - Method in class avrora.sim.BaseInterpreter.StateImpl
  Read a general purpose register's current value as an integer, without any sign extension.
getRegisterUnsigned(Register) - Method in class avrora.sim.BaseInterpreter
  Read a general purpose register's current value as an integer, without any sign extension.
getRegisterUnsigned(int) - Method in class avrora.sim.BaseInterpreter
  The `getRegisterUnsigned()` method reads a register's value (without sign extension)
getRegisterUnsigned(Register) - Method in interface avrora.sim.State
  Read a general purpose register's current value as an integer, without any sign extension.
getRegisterWord(Register) - Method in class avrora.sim.BaseInterpreter.StateImpl
  Read a general purpose register pair as an unsigned word.
getRegisterWord(Register) - Method in class avrora.sim.BaseInterpreter
  Read a general purpose register pair as an unsigned word.
getRegisterWord(int) - Method in class avrora.sim.BaseInterpreter
  Read a general purpose register pair as an unsigned word.
getRegisterWord(Register) - Method in interface avrora.sim.State
  Read a general purpose register pair as an unsigned word.
getReturnSummary(int) - Method in class avrora.stack.isea.ISEAnalyzer
getRightMostToken() - Method in class avrora.syntax.ASTNode
  The `getRightMostToken()` method gets the last token associated with the abstract syntax tree node.
getRightMostToken() - Method in class avrora.syntax.Expr.BinOp
getRightMostToken() - Method in class avrora.syntax.Expr.Func
getRightMostToken() - Method in class avrora.syntax.Expr.RelativeAddress
getRightMostToken() - Method in class avrora.syntax.Expr.Term
getRightMostToken() - Method in class avrora.syntax.Expr.UnOp
getRightMostToken() - Method in class avrora.syntax.ExprList
getRightMostToken() - Method in class avrora.syntax.SyntacticOperand
getSP() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getSP()` method reads the current value of the stack pointer.
getSP() - Method in class avrora.sim.BaseInterpreter
  The `getSP()` method reads the current value of the stack pointer.
getSP() - Method in interface avrora.sim.State
  The `getSP()` method reads the current value of the stack pointer.
getSREG() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getSREG()` method reads the value of the status register.
getSREG() - Method in class avrora.sim.BaseInterpreter
  The `getSREG()` method reads the value of the status register.
getSREG() - Method in interface avrora.sim.State
  The `getSREG()` method reads the value of the status register.
getSREG() - Method in class avrora.stack.AbstractState
  The `getSREG()` method reads the abstract value of the status register.
getSREG() - Method in class avrora.stack.isea.ISEInterpreter
getSREG() - Method in class avrora.stack.isea.ISEState
getScale() - Method in class avrora.gui.TimeScale
getScrollBarSize(long) - Method in class avrora.gui.TimeScale
getShareForName(String) - Method in class avrora.util.profiling.Proportion
  Search for the counter with the specified string name and return it if it is registered.
getSimulation(String) - Static method in class avrora.Defaults
getSimulation() - Method in class avrora.gui.AvroraGui
  A `Simulation` object holds data about the current sim running
getSimulation() - Method in class avrora.sim.Simulation.Node
  The `getSimulation()` method returns a reference to the simulation instance which this node is a part of.
getSimulator() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getSimulator()` method returns the simulator associated with this state instance.
getSimulator() - Method in class avrora.sim.BaseInterpreter
  The `getSimulator()` method gets a reference to the simulator which encapsulates this interpreter.
getSimulator() - Method in class avrora.sim.Simulation.Node
  The `getSimulator()` method returns the simulator instance for this node while it is executing.
getSimulator() - Method in class avrora.sim.SimulatorThread
  The `getSimulator()` method gets the `Simulator` instance that this thread is bound to.
getSimulator() - Method in interface avrora.sim.State
  The `getSimulator()` method returns the simulator associated with this state instance.
getSimulator() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `getSimulator()` method gets a reference to the simulator for this microcontroller instance.
getSimulator() - Method in interface avrora.sim.mcu.Microcontroller
  The `getSimulator()` method gets a simulator instance that is capable of emulating this hardware device.
getSimulator() - Method in class avrora.sim.radio.CC1000Radio
  Get the `Simulator` on which this radio is running.
getSimulator() - Method in interface avrora.sim.radio.Radio
  Get the `Simulator` on which this radio is running.
getSingleBitMask(int) - Static method in class avrora.util.Arithmetic
getSingleInverseBitMask(int) - Static method in class avrora.util.Arithmetic
getSize() - Method in class avrora.core.ControlFlowGraph.Block
  The `getSize()` method returns the size of the basic block in bytes.
getSize() - Method in class avrora.core.Instr
  The `getSize()` method returns the size of the instruction in bytes.
getSize() - Method in interface avrora.core.InstrPrototype
  The `getSize()` method returns the size of the instruction in bytes.
getSize() - Method in class avrora.sim.mcu.RegisterSet
  The `getSize()` method returns the total number of registers in this register set.
getSleepMode() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getSleepMode()` method returns an integer code describing which sleep mode the microcontroller is currently in.
getSleepMode() - Method in interface avrora.sim.State
  The `getSleepMode()` method returns an integer code describing which sleep mode the microcontroller is currently in.
getSleepMode() - Method in class avrora.sim.mcu.ATMega128
getSleepMode() - Method in class avrora.sim.mcu.ATMega16
getSleepMode() - Method in class avrora.sim.mcu.ATMega32
getSleepMode() - Method in class avrora.sim.mcu.AtmelMicrocontroller
getSortedBlockIterator() - Method in class avrora.core.ControlFlowGraph
  The `getBlockIterator()` method constructs an interator over all of the blocks in the control flow graph, regardless of connectivity.
getSortedList() - Method in class avrora.util.ClassMap
  The `getSortedList()` method returns a sorted list of the short names (aliases) stored in this class map.
getSortedList() - Static method in class avrora.util.help.HelpSystem
  The `getSortedList()` returns a sorted list of all of the help categories.
getSource() - Method in class avrora.core.ControlFlowGraph.Edge
  The `getSource()` method returns the basic block that is the source of this edge.
getSourceMapping() - Method in class avrora.core.Program
getStackByte() - Method in class avrora.sim.BaseInterpreter.StateImpl
  The `getStackByte()` method reads a byte from the address specified by SP+1.
getStackByte() - Method in interface avrora.sim.State
  The `getStackByte()` method reads a byte from the address specified by SP+1.
getStartState() - Method in class avrora.sim.FiniteStateMachine
  The `getStartState()` method returns the state in which the machine starts operation.
getStartTime() - Method in class avrora.gui.TimeScale
getState() - Method in class avrora.sim.Simulator
  The `getState()` retrieves a reference to the current state of the simulation, including the values of all registers, the SRAM, the IO register, the program memory, program counter, etc.
getStateCache() - Method in class avrora.stack.StateTransitionGraph
  The `getStateCache()` method gets the cache of all the states in the state space.
getStateFor(MutableState) - Method in class avrora.stack.StateCache
  The `getCachedState()` method searches the state cache for an immutable state that corresponds to the given mutable state.
getStateIterator() - Method in class avrora.stack.StateCache
getStateName(int) - Method in class avrora.sim.FiniteStateMachine
  The `getStateName()` method retrieves the name for the specified state.
getStepSize() - Method in class avrora.gui.GraphEvents
getSubroutine(String) - Method in class avrora.core.isdl.Architecture
getSubroutineIterator() - Method in class avrora.core.isdl.Architecture
getSynchronizer() - Method in interface avrora.sim.radio.RadioAir
  The `getSynchronizer()` method gets the synchronizer for this air implementation.
getSynchronizer() - Method in class avrora.sim.radio.SimpleAir
  The `getSynchronizer()` method gets the synchronizer for this air implementation.
getSynchronizer() - Method in class avrora.sim.radio.freespace.FreeSpaceAir
getTarget() - Method in class avrora.core.ControlFlowGraph.Edge
  The `getTarget()` method returns the known target of this control flow graph edge, if it is known.
getTestHarness(String) - Static method in class avrora.Defaults
  The `getTestHarness()` method gets the test harness class corresponding to the given name represented as a string.
getThread() - Method in class avrora.sim.Simulation.Node
getToken(int) - Method in class avrora.core.isdl.parser.ISDLParser
getToken(int) - Method in class avrora.syntax.atmel.AtmelParser
getToken(int) - Method in class avrora.syntax.gas.GASParser
getToken(int) - Method in class avrora.syntax.objdump.ObjDumpParser
getToken(int) - Method in class avrora.test.probes.ProbeParser
getTotal() - Method in class avrora.util.profiling.Counter
getTotalConsumedEnergy() - Method in class avrora.sim.energy.Energy
  get the power consumption of this device
getTotalCount() - Method in class avrora.sim.clock.ClockPrescaler
  The `getTotalCount()` method returns the total number of clock cycles (ticks) that have elapsed for this clock.
getTotalStateCount() - Method in class avrora.stack.StateCache
  The `getTotalStateCount()` method returns the internally recorded number of states created in this state space.
getTransitionTime(int, int) - Method in class avrora.sim.FiniteStateMachine
  The `getTransitionTime()` method retrieves the transition time between the two states specified from the transition time matrix.
getType() - Method in class avrora.core.ControlFlowGraph.Edge
  The `getType()` method returns the string name of the type of this edge.
getType() - Method in class avrora.core.isdl.CodeRegion.Operand
getType() - Method in class avrora.stack.StateCache.State
getUniqueName() - Method in class avrora.stack.StateCache.State
  The `getUniqueName()` gets a string that uniquely identifies this state.
getValue() - Method in interface avrora.core.Operand.Constant
  The `getvalue()` method returns the integer value of this constant operand.
getValue() - Method in class avrora.syntax.SyntacticOperand.Expr
getValueAsWord() - Method in interface avrora.core.Operand.Constant
  The `getValueAsWord()` method returns the value of this constant operand as word-aligned; meaning, for addresses, it will divide by 2, but for immediate constants it will not.
getValueAsWord() - Method in class avrora.syntax.SyntacticOperand.Expr
getVariable(Token) - Method in class avrora.core.isdl.gen.InterpreterGenerator
getVariable(Token) - Method in class avrora.core.isdl.gen.PrettyPrinter
getVariable(Token) - Method in class avrora.sim.dbbc.DBBC.CodeGenerator
getVariable(AbstractToken) - Method in interface avrora.syntax.Context
  The `getVariable()` method looks up the value of a named constant within the current environment and returns its value.
getVariable(AbstractToken) - Method in class avrora.syntax.Module
getVariant() - Method in class avrora.core.Instr
  The `getVariant()` method returns the variant name of the instruction as a string.
getVariant() - Method in interface avrora.core.InstrPrototype
  The `getVariant()` method returns the variant name of the instruction as a string.
getVerbosePrinter(String) - Static method in class avrora.util.Verbose
getVersion() - Static method in class avrora.Version
  The `getVersion()` method returns a reference to a `Version` object that represents the version of the code base.
getWidth() - Method in class avrora.core.Register
  The `getWidth()` method returns the width of the register in bits.
getWriteCount(int, int) - Method in class avrora.sim.util.MemoryMatrixProfiler
  The `getWriteCount()` method returns the number of times the specified instruction wrote the specified memory address.
getX(long) - Method in class avrora.gui.TimeScale
getZoom() - Method in class avrora.gui.TimeScale
getZoomLevelOption() - Method in class avrora.gui.GraphNumbers
  This is called to get the visual widget that the user can set step size with.
globalMap - Static variable in class avrora.sim.dbbc.DBBC
globalName - Variable in class avrora.core.isdl.dep.StateUse.GlobalUse
globalProbe - Variable in class avrora.sim.BaseInterpreter
  The `globalProbe` field stores a reference to a `MulticastProbe` that contains all of the probes to be fired before and after the main execution runLoop--i.e. before and after every instruction.
globalProbe - Variable in class avrora.sim.FiniteStateMachine
globalProbe - Variable in class avrora.sim.InterruptTable
globalTime - Variable in class avrora.sim.radio.Channel
goal - Variable in class avrora.sim.clock.IntervalSynchronizer
graph - Variable in class avrora.gui.VisualStackMonitor.SPMon
graph - Variable in class avrora.stack.Analyzer

## H

H - Variable in class avrora.sim.BaseInterpreter
HELP - Static variable in class avrora.Main
HELP - Static variable in class avrora.actions.AnalyzeStackAction
HELP - Static variable in class avrora.actions.CFGAction
HELP - Static variable in class avrora.actions.DBBCAction
HELP - Static variable in class avrora.actions.GUIAction
HELP - Static variable in class avrora.actions.ISDLAction
HELP - Static variable in class avrora.actions.SimulateAction
HELP - Static variable in class avrora.actions.TestAction
HELP - Static variable in class avrora.monitors.GDBServer
HELP - Static variable in class avrora.sim.types.SensorSimulation
HELP - Static variable in class avrora.sim.types.SingleSimulation
HEX_CHARS - Static variable in class avrora.util.StringUtil
HEX_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
HEX_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
HEX_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
HEX_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
HEX_LITERAL - Static variable in interface avrora.test.probes.ProbeParserConstants
HGPR_set - Static variable in class avrora.core.Register
HI8 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
HI8 - Static variable in interface avrora.syntax.gas.GASParserConstants
HIGH - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
HIGH - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
HOURS - Static variable in class avrora.util.StringUtil
HTML - Static variable in class avrora.Main
HWRD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
HWRD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
HZ - Variable in class avrora.sim.mcu.AtmelMicrocontroller
Header() - Method in class avrora.syntax.objdump.ObjDumpParser
HelpCategory - class avrora.util.help.HelpCategory.
  The `HelpCategory` class implements a category that provides help from the command line.
HelpCategory(String, String) - Constructor for class avrora.util.help.HelpCategory
  The constructor for the `HelpCategory` class creates a new help category with the specified short name and the specified default help.
HelpItem - interface avrora.util.help.HelpItem.
HelpSystem - class avrora.util.help.HelpSystem.
  The `HelpSystem` is the global repository for help information, indexing categories for help, while each category can have sub categories, etc.
HelpSystem() - Constructor for class avrora.util.help.HelpSystem
hasBody() - Method in class avrora.core.isdl.CodeRegion
hasClock(String) - Method in class avrora.sim.clock.ClockDomain
  The `hasClock()` method queries the clock domain whether it contains a particular named clock.
hasData() - Method in class avrora.util.profiling.Counter
hasData() - Method in class avrora.util.profiling.DataItem
hasData() - Method in class avrora.util.profiling.MinMaxMean
hasData() - Method in class avrora.util.profiling.Proportion
  Return true if this proportion has any information available.
hasIOReg(String) - Method in class avrora.sim.mcu.MicrocontrollerProperties
  The `hasIOReg()` method queries whether the IO register exists on this device.
hasIOReg(String) - Method in class avrora.sim.mcu.RegisterLayout
  The `hasIOReg()` method simply checks whether this register layout has a register with the specified name.
hasNext() - Method in class avrora.util.profiling.Measurements.Iterator
hasNext() - Method in class avrora.util.profiling.TimedMeasurements.Iterator
hasOption(String) - Method in class avrora.util.Options
hashCode() - Method in class avrora.core.ControlFlowGraph.Block
  The `hashCode()` method computes the hash code of this block.
hashCode() - Method in class avrora.core.Program.Location
  The `hashCode()` method computes the hash code of this location so that it can be used in any of the standard collection libraries.
hashCode() - Method in class avrora.core.Register
  The `hashCode()` computes the hash code of this register so that registers can be inserted in hashmaps and hashsets.
hashCode() - Method in class avrora.core.SourceMapping.Location
  The `hashCode()` method computes the hash code of this location so that it can be used in any of the standard collection libraries.
hashCode() - Method in class avrora.stack.AbstractState
hashCode() - Method in class avrora.stack.MutableState
  The `hashCode()` method computes an integer hash code for this state.
hashCode() - Method in class avrora.stack.StateCache.State
head - Variable in class avrora.sim.clock.DeltaQueue
  The `head` field stores a reference to the head of the delta queue, which represents the event that is nearest in the future.
head - Variable in class avrora.sim.util.TransactionalList
head - Variable in class avrora.syntax.ExprList
help - Variable in class avrora.util.help.ClassMapValueItem
help - Variable in class avrora.util.help.HelpCategory
help - Variable in class avrora.util.help.SubcategoryItem
help - Variable in class avrora.util.help.ValueItem
helpCat - Variable in class avrora.util.help.SubcategoryItem
hexValueOf(char) - Static method in class avrora.util.StringUtil
high - Variable in class avrora.core.Instr.InvalidImmediate
  The `high` field stores the highest value that is allowed for this operand.
high - Variable in class avrora.core.isdl.OperandDecl.Immediate
high(int) - Static method in class avrora.sim.GenInterpreter
high - Variable in class avrora.sim.mcu.ADC.DataRegister
high(short) - Static method in class avrora.util.Arithmetic
high(int) - Static method in class avrora.util.Arithmetic
high - Variable in class avrora.util.Option.Interval
high_addr - Variable in class avrora.sim.util.RangeProfiler
  The `high_addr` stores the highest address in the range.
high_bit - Variable in class avrora.core.isdl.ast.BitRangeExpr
  The `high_bit` field represents the highest bit in the range to be extracted, inclusive.
high_bit - Variable in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `high_bit` field stores the highest bit of the range of bits being assigned.
high_bit - Variable in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `high_bit` field stores the highest bit of the range of bits being assigned.
horzBar - Variable in class avrora.gui.GraphEvents
  This is the bar that determines what part of the graph is displayed
horzBar - Variable in class avrora.gui.GraphNumbers
  This is the bar that determines what part of the graph is displayed
htmlColors - Static variable in class avrora.util.Terminal
hz - Variable in class avrora.sim.clock.Clock
  The `hz` field stores the rate of this clock in cycles per second.

## I

I - Variable in class avrora.sim.BaseInterpreter
ICALL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ICALL - Static variable in interface avrora.syntax.gas.GASParserConstants
ICALL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ICR1H - Static variable in interface avrora.stack.IORegisterConstants
ICR1L - Static variable in interface avrora.stack.IORegisterConstants
ICR3H - Static variable in interface avrora.stack.IORegisterConstants
ICR3L - Static variable in interface avrora.stack.IORegisterConstants
IDENTIFIER - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
IDENTIFIER - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
IDENTIFIER - Static variable in interface avrora.syntax.gas.GASParserConstants
IDENTIFIER - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
IDENTIFIER - Static variable in interface avrora.test.probes.ProbeParserConstants
ID_LENGTH - Static variable in class avrora.util.StringUtil
IF - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
IJMP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
IJMP - Static variable in interface avrora.syntax.gas.GASParserConstants
IJMP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
IN - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
IN - Static variable in interface avrora.syntax.gas.GASParserConstants
IN - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
INC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
INC - Static variable in interface avrora.syntax.gas.GASParserConstants
INC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
INCLUDE - Static variable in interface avrora.syntax.gas.GASParserConstants
INDIRECT_EDGES - Variable in class avrora.core.ProgramReader
INLINE - Variable in class avrora.actions.ISDLAction
INLINE - Static variable in class avrora.core.isdl.Architecture
INLINE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
INPUT - Static variable in class avrora.Main
INSERT - Static variable in interface avrora.test.probes.ProbeParserConstants
INSTRUCTION - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
INTEGER_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
INTEGER_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
INTEGER_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
INTEGER_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
INTEGER_LITERAL - Static variable in interface avrora.test.probes.ProbeParserConstants
INTERPRETER - Variable in class avrora.actions.ISDLAction
INTER_PACKET_TIME - Static variable in class avrora.monitors.PacketMonitor
INTRA_BLOCK_PROBING - Variable in class avrora.sim.dbbc.DBBC
INT_EDGE - Static variable in class avrora.stack.Analyzer
INV_ONLY - Variable in class avrora.monitors.InterruptMonitor
IN_FORMAL_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
IN_FORMAL_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
IN_MULTI_LINE_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
IN_MULTI_LINE_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
IN_SINGLE_LINE_COMMENT - Static variable in interface avrora.test.probes.ProbeParserConstants
IN_TRANSITION - Static variable in class avrora.sim.FiniteStateMachine
IORegMonitor - class avrora.monitors.IORegMonitor.
  The `IORegMonitor` is a simple tracing mechanism that allows reads and writes of IO registers to be displayed to the user as the program performs them.
IORegMonitor() - Constructor for class avrora.monitors.IORegMonitor
IORegisterConstants - interface avrora.stack.IORegisterConstants.
  The `IORegisterConstants` interface is used to centralize the numeric values of the IO registers of the AVR architecture.
ISDLAction - class avrora.actions.ISDLAction.
  The `ISDLAction` class implements an action to load an instruction set description from a file and perform various actions with it, including generating the `Instr` classes and generating an interpreter.
ISDLAction() - Constructor for class avrora.actions.ISDLAction
ISDLParser - class avrora.core.isdl.parser.ISDLParser.
ISDLParser(InputStream) - Constructor for class avrora.core.isdl.parser.ISDLParser
ISDLParser(Reader) - Constructor for class avrora.core.isdl.parser.ISDLParser
ISDLParser(ISDLParserTokenManager) - Constructor for class avrora.core.isdl.parser.ISDLParser
ISDLParserConstants - interface avrora.core.isdl.parser.ISDLParserConstants.
ISDLParserTokenManager - class avrora.core.isdl.parser.ISDLParserTokenManager.
ISDLParserTokenManager(SimpleCharStream) - Constructor for class avrora.core.isdl.parser.ISDLParserTokenManager
ISDLParserTokenManager(SimpleCharStream, int) - Constructor for class avrora.core.isdl.parser.ISDLParserTokenManager
ISEAAction - class avrora.actions.ISEAAction.
  The `ISEAAction` class implements interprocedural side-effect analysis.
ISEAAction() - Constructor for class avrora.actions.ISEAAction
ISEAbstractState - class avrora.stack.isea.ISEAbstractState.
ISEAbstractState(ISEAbstractState.Element[], byte[], int) - Constructor for class avrora.stack.isea.ISEAbstractState
ISEAbstractState.Element - class avrora.stack.isea.ISEAbstractState.Element.
ISEAbstractState.Element(String, byte, boolean) - Constructor for class avrora.stack.isea.ISEAbstractState.Element
ISEAnalyzer - class avrora.stack.isea.ISEAnalyzer.
  The `ISEAnalyzer` class is a static analyzer for machine code.
ISEAnalyzer(Program) - Constructor for class avrora.stack.isea.ISEAnalyzer
ISEInterpreter - class avrora.stack.isea.ISEInterpreter.
  The `ISEInterpreter` class implements an abstract interpreter for intraprocedural side effect analysis.
ISEInterpreter(Program, ISEInterpreter.SummaryCache) - Constructor for class avrora.stack.isea.ISEInterpreter
ISEInterpreter.SummaryCache - interface avrora.stack.isea.ISEInterpreter.SummaryCache.
ISEState - class avrora.stack.isea.ISEState.
ISEState() - Constructor for class avrora.stack.isea.ISEState
ISEState(ISEState) - Constructor for class avrora.stack.isea.ISEState
ISEValue - class avrora.stack.isea.ISEValue.
  The `ISEValue` class contains a collection of constants and methods relating to the abstract values used in intraprocedural side effect analysis.
ISEValue() - Constructor for class avrora.stack.isea.ISEValue
IfStatement() - Method in class avrora.core.isdl.parser.ISDLParser
IfStmt - class avrora.core.isdl.ast.IfStmt.
  The `IfStmt` class represents a simple branch within the IR.
IfStmt(Expr, List, List) - Constructor for class avrora.core.isdl.ast.IfStmt
  The constructor of the `IfStmt` class simply initializes the internal fields based on the parameters.
IncludeDirective() - Method in class avrora.syntax.atmel.AtmelParser
IncludeDirective() - Method in class avrora.syntax.gas.GASParser
IncludeFileNotFound(AbstractToken) - Method in class avrora.syntax.AVRErrorReporter
IncorrectRegister(SyntacticOperand, Register, String) - Method in class avrora.syntax.AVRErrorReporter
Inliner - class avrora.core.isdl.gen.Inliner.
  The `Inliner` class implements a visitor over the code that inlines calls to known subroutines.
Inliner(Architecture) - Constructor for class avrora.core.isdl.gen.Inliner
Instr - class avrora.core.Instr.
  The `Instr` class and its descendants represent instructions within the assembly code.
Instr(InstrProperties) - Constructor for class avrora.core.Instr
  The constructor for the `Instr` class creates a new instruction with the specified instruction properties.
Instr.ADC - class avrora.core.Instr.ADC.
  ---------------------------------------------------------------- I N S T R U C T I O N D E S C R I P T I O N S ----------------------------------------------------------------

  These are the actual instruction descriptions that contain the constraints on operands and sizes, etc.
Instr.ADC(int, Register, Register) - Constructor for class avrora.core.Instr.ADC
Instr.ADD - class avrora.core.Instr.ADD.
Instr.ADD(int, Register, Register) - Constructor for class avrora.core.Instr.ADD
Instr.ADIW - class avrora.core.Instr.ADIW.
Instr.ADIW(int, Register, int) - Constructor for class avrora.core.Instr.ADIW
Instr.AND - class avrora.core.Instr.AND.
Instr.AND(int, Register, Register) - Constructor for class avrora.core.Instr.AND
Instr.ANDI - class avrora.core.Instr.ANDI.
Instr.ANDI(int, Register, int) - Constructor for class avrora.core.Instr.ANDI
Instr.ASR - class avrora.core.Instr.ASR.
Instr.ASR(int, Register) - Constructor for class avrora.core.Instr.ASR
Instr.BCLR - class avrora.core.Instr.BCLR.
Instr.BCLR(int, int) - Constructor for class avrora.core.Instr.BCLR
Instr.BLD - class avrora.core.Instr.BLD.
Instr.BLD(int, Register, int) - Constructor for class avrora.core.Instr.BLD
Instr.BRBC - class avrora.core.Instr.BRBC.
Instr.BRBC(int, int, int) - Constructor for class avrora.core.Instr.BRBC
Instr.BRBS - class avrora.core.Instr.BRBS.
Instr.BRBS(int, int, int) - Constructor for class avrora.core.Instr.BRBS
Instr.BRCC - class avrora.core.Instr.BRCC.
Instr.BRCC(int, int) - Constructor for class avrora.core.Instr.BRCC
Instr.BRCS - class avrora.core.Instr.BRCS.
Instr.BRCS(int, int) - Constructor for class avrora.core.Instr.BRCS
Instr.BREAK - class avrora.core.Instr.BREAK.
Instr.BREAK(int) - Constructor for class avrora.core.Instr.BREAK
Instr.BREQ - class avrora.core.Instr.BREQ.
Instr.BREQ(int, int) - Constructor for class avrora.core.Instr.BREQ
Instr.BRGE - class avrora.core.Instr.BRGE.
Instr.BRGE(int, int) - Constructor for class avrora.core.Instr.BRGE
Instr.BRHC - class avrora.core.Instr.BRHC.
Instr.BRHC(int, int) - Constructor for class avrora.core.Instr.BRHC
Instr.BRHS - class avrora.core.Instr.BRHS.
Instr.BRHS(int, int) - Constructor for class avrora.core.Instr.BRHS
Instr.BRID - class avrora.core.Instr.BRID.
Instr.BRID(int, int) - Constructor for class avrora.core.Instr.BRID
Instr.BRIE - class avrora.core.Instr.BRIE.
Instr.BRIE(int, int) - Constructor for class avrora.core.Instr.BRIE
Instr.BRLO - class avrora.core.Instr.BRLO.
Instr.BRLO(int, int) - Constructor for class avrora.core.Instr.BRLO
Instr.BRLT - class avrora.core.Instr.BRLT.
Instr.BRLT(int, int) - Constructor for class avrora.core.Instr.BRLT
Instr.BRMI - class avrora.core.Instr.BRMI.
Instr.BRMI(int, int) - Constructor for class avrora.core.Instr.BRMI
Instr.BRNE - class avrora.core.Instr.BRNE.
Instr.BRNE(int, int) - Constructor for class avrora.core.Instr.BRNE
Instr.BRPL - class avrora.core.Instr.BRPL.
Instr.BRPL(int, int) - Constructor for class avrora.core.Instr.BRPL
Instr.BRSH - class avrora.core.Instr.BRSH.
Instr.BRSH(int, int) - Constructor for class avrora.core.Instr.BRSH
Instr.BRTC - class avrora.core.Instr.BRTC.
Instr.BRTC(int, int) - Constructor for class avrora.core.Instr.BRTC
Instr.BRTS - class avrora.core.Instr.BRTS.
Instr.BRTS(int, int) - Constructor for class avrora.core.Instr.BRTS
Instr.BRVC - class avrora.core.Instr.BRVC.
Instr.BRVC(int, int) - Constructor for class avrora.core.Instr.BRVC
Instr.BRVS - class avrora.core.Instr.BRVS.
Instr.BRVS(int, int) - Constructor for class avrora.core.Instr.BRVS
Instr.BSET - class avrora.core.Instr.BSET.
Instr.BSET(int, int) - Constructor for class avrora.core.Instr.BSET
Instr.BST - class avrora.core.Instr.BST.
Instr.BST(int, Register, int) - Constructor for class avrora.core.Instr.BST
Instr.CALL - class avrora.core.Instr.CALL.
Instr.CALL(int, int) - Constructor for class avrora.core.Instr.CALL
Instr.CBI - class avrora.core.Instr.CBI.
Instr.CBI(int, int, int) - Constructor for class avrora.core.Instr.CBI
Instr.CBR - class avrora.core.Instr.CBR.
Instr.CBR(int, Register, int) - Constructor for class avrora.core.Instr.CBR
Instr.CLC - class avrora.core.Instr.CLC.
Instr.CLC(int) - Constructor for class avrora.core.Instr.CLC
Instr.CLH - class avrora.core.Instr.CLH.
Instr.CLH(int) - Constructor for class avrora.core.Instr.CLH
Instr.CLI - class avrora.core.Instr.CLI.
Instr.CLI(int) - Constructor for class avrora.core.Instr.CLI
Instr.CLN - class avrora.core.Instr.CLN.
Instr.CLN(int) - Constructor for class avrora.core.Instr.CLN
Instr.CLR - class avrora.core.Instr.CLR.
Instr.CLR(int, Register) - Constructor for class avrora.core.Instr.CLR
Instr.CLS - class avrora.core.Instr.CLS.
Instr.CLS(int) - Constructor for class avrora.core.Instr.CLS
Instr.CLT - class avrora.core.Instr.CLT.
Instr.CLT(int) - Constructor for class avrora.core.Instr.CLT
Instr.CLV - class avrora.core.Instr.CLV.
Instr.CLV(int) - Constructor for class avrora.core.Instr.CLV
Instr.CLZ - class avrora.core.Instr.CLZ.
Instr.CLZ(int) - Constructor for class avrora.core.Instr.CLZ
Instr.COM - class avrora.core.Instr.COM.
Instr.COM(int, Register) - Constructor for class avrora.core.Instr.COM
Instr.CP - class avrora.core.Instr.CP.
Instr.CP(int, Register, Register) - Constructor for class avrora.core.Instr.CP
Instr.CPC - class avrora.core.Instr.CPC.
Instr.CPC(int, Register, Register) - Constructor for class avrora.core.Instr.CPC
Instr.CPI - class avrora.core.Instr.CPI.
Instr.CPI(int, Register, int) - Constructor for class avrora.core.Instr.CPI
Instr.CPSE - class avrora.core.Instr.CPSE.
Instr.CPSE(int, Register, Register) - Constructor for class avrora.core.Instr.CPSE
Instr.DEC - class avrora.core.Instr.DEC.
Instr.DEC(int, Register) - Constructor for class avrora.core.Instr.DEC
Instr.EICALL - class avrora.core.Instr.EICALL.
Instr.EICALL(int) - Constructor for class avrora.core.Instr.EICALL
Instr.EIJMP - class avrora.core.Instr.EIJMP.
Instr.EIJMP(int) - Constructor for class avrora.core.Instr.EIJMP
Instr.ELPM - class avrora.core.Instr.ELPM.
Instr.ELPM(int) - Constructor for class avrora.core.Instr.ELPM
Instr.ELPMD - class avrora.core.Instr.ELPMD.
Instr.ELPMD(int, Register, Register) - Constructor for class avrora.core.Instr.ELPMD
Instr.ELPMPI - class avrora.core.Instr.ELPMPI.
Instr.ELPMPI(int, Register, Register) - Constructor for class avrora.core.Instr.ELPMPI
Instr.EOR - class avrora.core.Instr.EOR.
Instr.EOR(int, Register, Register) - Constructor for class avrora.core.Instr.EOR
Instr.FMUL - class avrora.core.Instr.FMUL.
Instr.FMUL(int, Register, Register) - Constructor for class avrora.core.Instr.FMUL
Instr.FMULS - class avrora.core.Instr.FMULS.
Instr.FMULS(int, Register, Register) - Constructor for class avrora.core.Instr.FMULS
Instr.FMULSU - class avrora.core.Instr.FMULSU.
Instr.FMULSU(int, Register, Register) - Constructor for class avrora.core.Instr.FMULSU
Instr.ICALL - class avrora.core.Instr.ICALL.
Instr.ICALL(int) - Constructor for class avrora.core.Instr.ICALL
Instr.IJMP - class avrora.core.Instr.IJMP.
Instr.IJMP(int) - Constructor for class avrora.core.Instr.IJMP
Instr.IMMIMM_class - class avrora.core.Instr.IMMIMM_class.
Instr.IMMREG_class - class avrora.core.Instr.IMMREG_class.
Instr.IMMWORD_class - class avrora.core.Instr.IMMWORD_class.
Instr.IMM_class - class avrora.core.Instr.IMM_class.
Instr.IN - class avrora.core.Instr.IN.
Instr.IN(int, Register, int) - Constructor for class avrora.core.Instr.IN
Instr.INC - class avrora.core.Instr.INC.
Instr.INC(int, Register) - Constructor for class avrora.core.Instr.INC
Instr.ImmediateRequired - exception avrora.core.Instr.ImmediateRequired.
  The `ImmediateRequired` class represents an error in construction of an instance of `Instr` where the given operand is expected to be an immediate but is not.
Instr.InvalidImmediate - exception avrora.core.Instr.InvalidImmediate.
  The `InvalidImmediate` class represents an error in construction of an instance of `Instr` where the given immediate operand is not within the range that is specified by the instruction set manual.
Instr.InvalidImmediate(int, int, int, int) - Constructor for class avrora.core.Instr.InvalidImmediate
Instr.InvalidOperand - exception avrora.core.Instr.InvalidOperand.
  The `InvalidOperand` class represents a runtime error thrown by the constructor of an instruction or the `build` method of a prototype when an operand does not meet the restrictions imposed by the AVR instruction set architecture.
Instr.InvalidRegister - exception avrora.core.Instr.InvalidRegister.
  The `InvalidRegister` class represents an error in constructing an instance of `Instr` where a register operand does not meet the instruction set specification.
Instr.InvalidRegister(int, Register, Register.Set) - Constructor for class avrora.core.Instr.InvalidRegister
Instr.JMP - class avrora.core.Instr.JMP.
Instr.JMP(int, int) - Constructor for class avrora.core.Instr.JMP
Instr.LD - class avrora.core.Instr.LD.
Instr.LD(int, Register, Register) - Constructor for class avrora.core.Instr.LD
Instr.LDD - class avrora.core.Instr.LDD.
Instr.LDD(int, Register, Register, int) - Constructor for class avrora.core.Instr.LDD
Instr.LDI - class avrora.core.Instr.LDI.
Instr.LDI(int, Register, int) - Constructor for class avrora.core.Instr.LDI
Instr.LDPD - class avrora.core.Instr.LDPD.
Instr.LDPD(int, Register, Register) - Constructor for class avrora.core.Instr.LDPD
Instr.LDPI - class avrora.core.Instr.LDPI.
Instr.LDPI(int, Register, Register) - Constructor for class avrora.core.Instr.LDPI
Instr.LDS - class avrora.core.Instr.LDS.
Instr.LDS(int, Register, int) - Constructor for class avrora.core.Instr.LDS
Instr.LPM - class avrora.core.Instr.LPM.
Instr.LPM(int) - Constructor for class avrora.core.Instr.LPM
Instr.LPMD - class avrora.core.Instr.LPMD.
Instr.LPMD(int, Register, Register) - Constructor for class avrora.core.Instr.LPMD
Instr.LPMPI - class avrora.core.Instr.LPMPI.
Instr.LPMPI(int, Register, Register) - Constructor for class avrora.core.Instr.LPMPI
Instr.LSL - class avrora.core.Instr.LSL.
Instr.LSL(int, Register) - Constructor for class avrora.core.Instr.LSL
Instr.LSR - class avrora.core.Instr.LSR.
Instr.LSR(int, Register) - Constructor for class avrora.core.Instr.LSR
Instr.MOV - class avrora.core.Instr.MOV.
Instr.MOV(int, Register, Register) - Constructor for class avrora.core.Instr.MOV
Instr.MOVW - class avrora.core.Instr.MOVW.
Instr.MOVW(int, Register, Register) - Constructor for class avrora.core.Instr.MOVW
Instr.MUL - class avrora.core.Instr.MUL.
Instr.MUL(int, Register, Register) - Constructor for class avrora.core.Instr.MUL
Instr.MULS - class avrora.core.Instr.MULS.
Instr.MULS(int, Register, Register) - Constructor for class avrora.core.Instr.MULS
Instr.MULSU - class avrora.core.Instr.MULSU.
Instr.MULSU(int, Register, Register) - Constructor for class avrora.core.Instr.MULSU
Instr.NEG - class avrora.core.Instr.NEG.
Instr.NEG(int, Register) - Constructor for class avrora.core.Instr.NEG
Instr.NONE_class - class avrora.core.Instr.NONE_class.
Instr.NOP - class avrora.core.Instr.NOP.
Instr.NOP(int) - Constructor for class avrora.core.Instr.NOP
Instr.OR - class avrora.core.Instr.OR.
Instr.OR(int, Register, Register) - Constructor for class avrora.core.Instr.OR
Instr.ORI - class avrora.core.Instr.ORI.
Instr.ORI(int, Register, int) - Constructor for class avrora.core.Instr.ORI
Instr.OUT - class avrora.core.Instr.OUT.
Instr.OUT(int, int, Register) - Constructor for class avrora.core.Instr.OUT
Instr.POP - class avrora.core.Instr.POP.
Instr.POP(int, Register) - Constructor for class avrora.core.Instr.POP
Instr.PUSH - class avrora.core.Instr.PUSH.
Instr.PUSH(int, Register) - Constructor for class avrora.core.Instr.PUSH
Instr.RCALL - class avrora.core.Instr.RCALL.
Instr.RCALL(int, int) - Constructor for class avrora.core.Instr.RCALL
Instr.REGIMMREG_class - class avrora.core.Instr.REGIMMREG_class.
Instr.REGIMM_class - class avrora.core.Instr.REGIMM_class.
Instr.REGREGIMM_class - class avrora.core.Instr.REGREGIMM_class.
Instr.REGREG_class - class avrora.core.Instr.REGREG_class.
  -------------------------------------------------------- A B S T R A C T C L A S S E S --------------------------------------------------------

  These abstract implementations of the instruction simplify the specification of each individual instruction considerably.
Instr.REG_class - class avrora.core.Instr.REG_class.
Instr.RET - class avrora.core.Instr.RET.
Instr.RET(int) - Constructor for class avrora.core.Instr.RET
Instr.RETI - class avrora.core.Instr.RETI.
Instr.RETI(int) - Constructor for class avrora.core.Instr.RETI
Instr.RJMP - class avrora.core.Instr.RJMP.
Instr.RJMP(int, int) - Constructor for class avrora.core.Instr.RJMP
Instr.ROL - class avrora.core.Instr.ROL.
Instr.ROL(int, Register) - Constructor for class avrora.core.Instr.ROL
Instr.ROR - class avrora.core.Instr.ROR.
Instr.ROR(int, Register) - Constructor for class avrora.core.Instr.ROR
Instr.RegisterRequired - exception avrora.core.Instr.RegisterRequired.
  The `RegisterRequired` class represents an error in construction of an instance of `Instr` where the given operand is expected to be a register but is not.
Instr.SBC - class avrora.core.Instr.SBC.
Instr.SBC(int, Register, Register) - Constructor for class avrora.core.Instr.SBC
Instr.SBCI - class avrora.core.Instr.SBCI.
Instr.SBCI(int, Register, int) - Constructor for class avrora.core.Instr.SBCI
Instr.SBI - class avrora.core.Instr.SBI.
Instr.SBI(int, int, int) - Constructor for class avrora.core.Instr.SBI
Instr.SBIC - class avrora.core.Instr.SBIC.
Instr.SBIC(int, int, int) - Constructor for class avrora.core.Instr.SBIC
Instr.SBIS - class avrora.core.Instr.SBIS.
Instr.SBIS(int, int, int) - Constructor for class avrora.core.Instr.SBIS
Instr.SBIW - class avrora.core.Instr.SBIW.
Instr.SBIW(int, Register, int) - Constructor for class avrora.core.Instr.SBIW
Instr.SBR - class avrora.core.Instr.SBR.
Instr.SBR(int, Register, int) - Constructor for class avrora.core.Instr.SBR
Instr.SBRC - class avrora.core.Instr.SBRC.
Instr.SBRC(int, Register, int) - Constructor for class avrora.core.Instr.SBRC
Instr.SBRS - class avrora.core.Instr.SBRS.
Instr.SBRS(int, Register, int) - Constructor for class avrora.core.Instr.SBRS
Instr.SEC - class avrora.core.Instr.SEC.
Instr.SEC(int) - Constructor for class avrora.core.Instr.SEC
Instr.SEH - class avrora.core.Instr.SEH.
Instr.SEH(int) - Constructor for class avrora.core.Instr.SEH
Instr.SEI - class avrora.core.Instr.SEI.
Instr.SEI(int) - Constructor for class avrora.core.Instr.SEI
Instr.SEN - class avrora.core.Instr.SEN.
Instr.SEN(int) - Constructor for class avrora.core.Instr.SEN
Instr.SER - class avrora.core.Instr.SER.
Instr.SER(int, Register) - Constructor for class avrora.core.Instr.SER
Instr.SES - class avrora.core.Instr.SES.
Instr.SES(int) - Constructor for class avrora.core.Instr.SES
Instr.SET - class avrora.core.Instr.SET.
Instr.SET(int) - Constructor for class avrora.core.Instr.SET
Instr.SEV - class avrora.core.Instr.SEV.
Instr.SEV(int) - Constructor for class avrora.core.Instr.SEV
Instr.SEZ - class avrora.core.Instr.SEZ.
Instr.SEZ(int) - Constructor for class avrora.core.Instr.SEZ
Instr.SLEEP - class avrora.core.Instr.SLEEP.
Instr.SLEEP(int) - Constructor for class avrora.core.Instr.SLEEP
Instr.SPM - class avrora.core.Instr.SPM.
Instr.SPM(int) - Constructor for class avrora.core.Instr.SPM
Instr.ST - class avrora.core.Instr.ST.
Instr.ST(int, Register, Register) - Constructor for class avrora.core.Instr.ST
Instr.STD - class avrora.core.Instr.STD.
Instr.STD(int, Register, int, Register) - Constructor for class avrora.core.Instr.STD
Instr.STPD - class avrora.core.Instr.STPD.
Instr.STPD(int, Register, Register) - Constructor for class avrora.core.Instr.STPD
Instr.STPI - class avrora.core.Instr.STPI.
Instr.STPI(int, Register, Register) - Constructor for class avrora.core.Instr.STPI
Instr.STS - class avrora.core.Instr.STS.
Instr.STS(int, int, Register) - Constructor for class avrora.core.Instr.STS
Instr.SUB - class avrora.core.Instr.SUB.
Instr.SUB(int, Register, Register) - Constructor for class avrora.core.Instr.SUB
Instr.SUBI - class avrora.core.Instr.SUBI.
Instr.SUBI(int, Register, int) - Constructor for class avrora.core.Instr.SUBI
Instr.SWAP - class avrora.core.Instr.SWAP.
Instr.SWAP(int, Register) - Constructor for class avrora.core.Instr.SWAP
Instr.TST - class avrora.core.Instr.TST.
Instr.TST(int, Register) - Constructor for class avrora.core.Instr.TST
Instr.WDR - class avrora.core.Instr.WDR.
Instr.WDR(int) - Constructor for class avrora.core.Instr.WDR
Instr.WORD_class - class avrora.core.Instr.WORD_class.
Instr.WrongNumberOfOperands - exception avrora.core.Instr.WrongNumberOfOperands.
  The `WrongNumberOfOperands` class represents a runtime error thrown by the `build` method of a prototype when the wrong number of operands is passed to build an instruction.
InstrBARE() - Method in class avrora.syntax.atmel.AtmelParser
InstrBARE() - Method in class avrora.syntax.gas.GASParser
InstrBARE() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrDecl - class avrora.core.isdl.InstrDecl.
  The `InstrDecl` class represents the declaration of an instruction in an instruction set description language file.
InstrDecl(boolean, Token, List, Token, Token, List, List) - Constructor for class avrora.core.isdl.InstrDecl
  The constructor of the `InstrDecl` class initializes the fields based on the parameters.
InstrGPR() - Method in class avrora.syntax.atmel.AtmelParser
InstrGPR() - Method in class avrora.syntax.gas.GASParser
InstrGPR() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrGPRGPR() - Method in class avrora.syntax.atmel.AtmelParser
InstrGPRGPR() - Method in class avrora.syntax.gas.GASParser
InstrGPRGPR() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrGPRIMM() - Method in class avrora.syntax.atmel.AtmelParser
InstrGPRIMM() - Method in class avrora.syntax.gas.GASParser
InstrGPRIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrIMM() - Method in class avrora.syntax.atmel.AtmelParser
InstrIMM() - Method in class avrora.syntax.gas.GASParser
InstrIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrIMMIMM() - Method in class avrora.syntax.atmel.AtmelParser
InstrIMMIMM() - Method in class avrora.syntax.gas.GASParser
InstrIMMIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrInput() - Method in class avrora.syntax.atmel.AtmelParser
InstrInput() - Method in class avrora.syntax.gas.GASParser
InstrInput() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLD() - Method in class avrora.syntax.atmel.AtmelParser
InstrLD() - Method in class avrora.syntax.gas.GASParser
InstrLD() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLDD() - Method in class avrora.syntax.atmel.AtmelParser
InstrLDD() - Method in class avrora.syntax.gas.GASParser
InstrLDD() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLDI() - Method in class avrora.syntax.atmel.AtmelParser
InstrLDI() - Method in class avrora.syntax.gas.GASParser
InstrLDI() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLDPD() - Method in class avrora.syntax.atmel.AtmelParser
InstrLDPD() - Method in class avrora.syntax.gas.GASParser
InstrLDPD() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLDPI() - Method in class avrora.syntax.atmel.AtmelParser
InstrLDPI() - Method in class avrora.syntax.gas.GASParser
InstrLDPI() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLDS() - Method in class avrora.syntax.atmel.AtmelParser
InstrLDS() - Method in class avrora.syntax.gas.GASParser
InstrLDS() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLD_variant() - Method in class avrora.syntax.atmel.AtmelParser
InstrLD_variant() - Method in class avrora.syntax.gas.GASParser
InstrLD_variant() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLPMBARE() - Method in class avrora.syntax.atmel.AtmelParser
InstrLPMBARE() - Method in class avrora.syntax.gas.GASParser
InstrLPMBARE() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLPMGPRGPR() - Method in class avrora.syntax.atmel.AtmelParser
InstrLPMGPRGPR() - Method in class avrora.syntax.gas.GASParser
InstrLPMGPRGPR() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLPMGPRGPRP() - Method in class avrora.syntax.atmel.AtmelParser
InstrLPMGPRGPRP() - Method in class avrora.syntax.gas.GASParser
InstrLPMGPRGPRP() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLPM_variant() - Method in class avrora.syntax.atmel.AtmelParser
InstrLPM_variant() - Method in class avrora.syntax.gas.GASParser
InstrLPM_variant() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrLoad() - Method in class avrora.syntax.atmel.AtmelParser
InstrLoad() - Method in class avrora.syntax.gas.GASParser
InstrLoad() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrOutput() - Method in class avrora.syntax.atmel.AtmelParser
InstrOutput() - Method in class avrora.syntax.gas.GASParser
InstrOutput() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrProperties - class avrora.core.InstrProperties.
  The `InstrProperties` represents a grab bag of the properties of an instruction.
InstrProperties(String, String, int, int) - Constructor for class avrora.core.InstrProperties
  The constructor for the `InstrProperties` class simply initializes the final fields of this class based on the input parameters.
InstrPrototype - interface avrora.core.InstrPrototype.
  The `InstrPrototype` interface represents an object that is capable of building `Instr` instances given an array of `Operand` instances.
InstrST() - Method in class avrora.syntax.atmel.AtmelParser
InstrST() - Method in class avrora.syntax.gas.GASParser
InstrST() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrSTD() - Method in class avrora.syntax.atmel.AtmelParser
InstrSTD() - Method in class avrora.syntax.gas.GASParser
InstrSTD() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrSTPD() - Method in class avrora.syntax.atmel.AtmelParser
InstrSTPD() - Method in class avrora.syntax.gas.GASParser
InstrSTPD() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrSTPI() - Method in class avrora.syntax.atmel.AtmelParser
InstrSTPI() - Method in class avrora.syntax.gas.GASParser
InstrSTPI() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrSTS() - Method in class avrora.syntax.atmel.AtmelParser
InstrSTS() - Method in class avrora.syntax.gas.GASParser
InstrSTS() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrST_variant() - Method in class avrora.syntax.atmel.AtmelParser
InstrST_variant() - Method in class avrora.syntax.gas.GASParser
InstrST_variant() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrStore() - Method in class avrora.syntax.atmel.AtmelParser
InstrStore() - Method in class avrora.syntax.gas.GASParser
InstrStore() - Method in class avrora.syntax.objdump.ObjDumpParser
InstrVisitor - interface avrora.core.InstrVisitor.
Instruction(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
Instruction() - Method in class avrora.syntax.atmel.AtmelParser
Instruction() - Method in class avrora.syntax.gas.GASParser
Instruction() - Method in class avrora.syntax.objdump.ObjDumpParser
InstructionCannotBeInSegment(String, AbstractToken) - Method in class avrora.syntax.AVRErrorReporter
InstructionSet - class avrora.core.InstructionSet.
  The `InstructionSet` class contains static methods that allow the instruction set of the AVR microcontroller to be accessed from one place.
InstructionSet() - Constructor for class avrora.core.InstructionSet
InteractiveMonitor - class avrora.monitors.InteractiveMonitor.
  The `InteractiveMonitor` class implements a monitor that allows the user to interact with the simulation as it is running.
InteractiveMonitor() - Constructor for class avrora.monitors.InteractiveMonitor
  The constructor for the `CallMonitor` class simply initializes the help for this class.
InteractiveMonitor.BreakPointProbe - class avrora.monitors.InteractiveMonitor.BreakPointProbe.
InteractiveMonitor.BreakPointProbe() - Constructor for class avrora.monitors.InteractiveMonitor.BreakPointProbe
InterpreterError - class avrora.sim.InterpreterError.
  The `InterpreterError` class is a collection point for all of the error classes that correspond to errors that can happen during the interpretation of a program.
InterpreterError() - Constructor for class avrora.sim.InterpreterError
InterpreterError.AddressOutOfBoundsException - error avrora.sim.InterpreterError.AddressOutOfBoundsException.
  The `AddressOutOfBoundsException` is thrown when the user attempts to access out of bounds memory through the state interface.
InterpreterError.AddressOutOfBoundsException(String, int, int) - Constructor for class avrora.sim.InterpreterError.AddressOutOfBoundsException
InterpreterError.NoSuchInstructionException - error avrora.sim.InterpreterError.NoSuchInstructionException.
  The `NoSuchInstructionException()` is thrown when the program attempts to execute an instruction that does not exist (i.e. a section of the flash that is not initialized).
InterpreterError.NoSuchInstructionException(int) - Constructor for class avrora.sim.InterpreterError.NoSuchInstructionException
InterpreterError.PCAlignmentException - error avrora.sim.InterpreterError.PCAlignmentException.
  The `PCAlignmentException` is thrown if the program counter somehow becomes misaligned.
InterpreterError.PCAlignmentException(int) - Constructor for class avrora.sim.InterpreterError.PCAlignmentException
InterpreterError.PCOutOfBoundsException - error avrora.sim.InterpreterError.PCOutOfBoundsException.
  The `PCOutOfBoundsException` is thrown when the progrma attempts to execute an instruction outside the bounds of the flash.
InterpreterError.PCOutOfBoundsException(int) - Constructor for class avrora.sim.InterpreterError.PCOutOfBoundsException
InterpreterFactory - class avrora.sim.InterpreterFactory.
  The `InterpreterFactory` class represents a factory for creating interpreters.
InterpreterFactory() - Constructor for class avrora.sim.InterpreterFactory
InterpreterGenerator - class avrora.core.isdl.gen.InterpreterGenerator.
  The `InterpreterGenerator` class is a visitor over the code of an instruction declaration or subroutine that generates the appropriate Java code that implements an interpreter for the architecture.
InterpreterGenerator(Architecture, Printer) - Constructor for class avrora.core.isdl.gen.InterpreterGenerator
  The constructor for the `InterpreterGenerator` class builds an object capable of generating the interpreter for a particular architecture that outputs to the specified printer.
InterpreterGenerator.ArrayMap - class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap.
InterpreterGenerator.GetterSetterMap - class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap.
InterpreterGenerator.IORegMap - class avrora.core.isdl.gen.InterpreterGenerator.IORegMap.
InterruptMonitor - class avrora.monitors.InterruptMonitor.
  The `InterruptMonitor` class implements a monitor that tracks the interrupts that happen during a simulation.
InterruptMonitor() - Constructor for class avrora.monitors.InterruptMonitor
InterruptScheduler - class avrora.sim.util.InterruptScheduler.
  The `InterruptScheduler` class is a testing utility that reads an interrupt schedule from a file and then posts the interrupts at the appropriate times (according to the schedule) to the simulator.
InterruptScheduler(String, Simulator) - Constructor for class avrora.sim.util.InterruptScheduler
InterruptScheduler.ScheduledInterrupt - class avrora.sim.util.InterruptScheduler.ScheduledInterrupt.
  The `ScheduledInterrupt` class is an event that is inserted into the queue of a simulator.
InterruptScheduler.ScheduledInterrupt(int) - Constructor for class avrora.sim.util.InterruptScheduler.ScheduledInterrupt
InterruptTable - class avrora.sim.InterruptTable.
  The `InterruptTable` class encapsulates the functionality relating to handling the state of the interrupts in the simulation.
InterruptTable.Notification - interface avrora.sim.InterruptTable.Notification.
  The `Notification` interface serves a very specific role in simulation; for device implementations to be notified when an interrupt that a device may have posted is executed, or when the user forces an interrupt to be notified.
InterruptTestHarness - class avrora.test.InterruptTestHarness.
  The `SimulatorTestHarness` implements a test harness that interfaces the `avrora.test.AutomatedTester` in order to automate testing of the AVR parser and simulator.
InterruptTestHarness() - Constructor for class avrora.test.InterruptTestHarness
IntervalSynchronizer - class avrora.sim.clock.IntervalSynchronizer.
  The `IntervalSynchronizer` class implements a global timer among multiple simulators by inserting periodic events into the queue of each simulator.
IntervalSynchronizer(long, Simulator.Event) - Constructor for class avrora.sim.clock.IntervalSynchronizer
  The constructor for the `IntervalSynchronizer` class creates a new synchronizer with the specified period, that will fire the specified event each time all threads meet at a synchronization point.
IntervalSynchronizer.SynchEvent - class avrora.sim.clock.IntervalSynchronizer.SynchEvent.
  The `SynchEvent` class represents an event that is inserted into the event queue of each simulator at the same global time.
IntervalSynchronizer.SynchEvent(SimulatorThread) - Constructor for class avrora.sim.clock.IntervalSynchronizer.SynchEvent
Item(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
Item - class avrora.syntax.Item.
  The `Item` class represents either an assembler directive, an instruction, or a sequence of initialized data with a source program.
Item() - Method in class avrora.syntax.objdump.ObjDumpParser
Item.InitializedData - class avrora.syntax.Item.InitializedData.
  The `InitializedData` item represents a section of programmer-declared initialized data within the program.
Item.Instruction - class avrora.syntax.Item.Instruction.
  The `Instruction` item in a source program represents an instruction that must be simplified and added to the program.
Item.Label - class avrora.syntax.Item.Label.
  The `Label` item represents a labelled location in the program that is given a name.
Item.NamedConstant - class avrora.syntax.Item.NamedConstant.
  The `NamedConstant` item in a source program represents a directive that assigns a computable value to a name.
Item.RegisterAlias - class avrora.syntax.Item.RegisterAlias.
  The `RegisterAlias` item in a source program represents a directive that adds an alias for a register.
Item.UninitializedData - class avrora.syntax.Item.UninitializedData.
  The `UnitializedData` item represents a declared section of data that is not given a value (a reservation of space).
icount - Variable in class avrora.monitors.ProfileMonitor.Monitor
icount - Variable in class avrora.sim.util.ProgramProfiler
  The `itime` field stores the invocation count for each instruction in the program.
icount - Variable in class avrora.sim.util.RangeProfiler
  The `itime` field stores the invocation count for each instruction in the range.
id - Variable in class avrora.sim.Simulation.Node
id - Variable in class avrora.sim.Simulator
  The `id` field stores a unique identifier used to differentiate this simulator from others that might be running in the same simulation.
id - Variable in class avrora.sim.platform.DefaultPlatform
id - Variable in class avrora.sim.radio.CC1000Radio.RadioRegister
idleModeNames - Static variable in class avrora.sim.mcu.ATMega128
idleModeNames - Static variable in class avrora.sim.mcu.ATMega16
idleModeNames - Static variable in class avrora.sim.mcu.ATMega32
image - Variable in class avrora.syntax.AbstractToken
  The string image of the token.
image - Variable in class avrora.test.probes.Token
  The string image of the token.
imm1 - Variable in class avrora.core.Instr.IMMIMM_class
imm1 - Variable in class avrora.core.Instr.IMMREG_class
imm1 - Variable in class avrora.core.Instr.IMMWORD_class
imm1 - Variable in class avrora.core.Instr.IMM_class
imm1 - Variable in class avrora.core.Instr.REGIMMREG_class
imm1 - Variable in class avrora.core.Instr.REGIMM_class
imm1 - Variable in class avrora.core.Instr.REGREGIMM_class
imm1 - Variable in class avrora.core.Instr.WORD_class
imm2 - Variable in class avrora.core.Instr.IMMIMM_class
imm2 - Variable in class avrora.core.Instr.IMMWORD_class
inBuf - Variable in class avrora.core.isdl.parser.SimpleCharStream
inBuf - Variable in class avrora.syntax.atmel.SimpleCharStream
inBuf - Variable in class avrora.syntax.gas.SimpleCharStream
inBuf - Variable in class avrora.syntax.objdump.SimpleCharStream
inBuf - Variable in class avrora.test.probes.SimpleCharStream
inc(long[], int[], int) - Static method in class avrora.util.Arithmetic
includeFile(AbstractToken) - Method in class avrora.syntax.Module
increment(char) - Static method in class avrora.stack.AbstractArithmetic
  The `increment()` method simply adds 1 to the abstract value.
increment() - Method in class avrora.util.profiling.Counter
increment(int) - Method in class avrora.util.profiling.Counter
incrementDistrib(int) - Method in class avrora.util.profiling.Distribution
  Increment the number of occurrences for a particular integer.
indent() - Method in class avrora.util.Printer
indent() - Method in class avrora.util.Verbose.Printer
indent - Variable in class avrora.util.help.ClassMapValueItem
indent - Variable in class avrora.util.help.SubcategoryItem
indent - Variable in class avrora.util.help.ValueItem
index - Variable in class avrora.core.isdl.ast.MapAssignStmt
  The `expr` field stores a references to the expression which is evaluated to yield the expr into the map.
index - Variable in class avrora.core.isdl.ast.MapBitAssignStmt
  The `expr` field stores a references to the expression which is evaluated to yield the expr into the map.
index - Variable in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `expr` field stores a references to the expression which is evaluated to yield the expr into the map.
index - Variable in class avrora.core.isdl.ast.MapExpr
  The `expr` field stores a references to the expression which is evaluated to yield the expr into the map.
index - Variable in class avrora.core.isdl.dep.StateUse.Index.Constant
index - Variable in class avrora.core.isdl.dep.StateUse.Index.OperandPlusConstant
index - Variable in class avrora.core.isdl.dep.StateUse.MapUse
indirectCall(MutableState, char, char) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `indirectCall()` method is called by the abstract interpreter when it encounters an indirect call within the program.
indirectCall(MutableState, char, char, char) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `indirectCall()` method is called by the abstract interpreter when it encounters an indirect call within the program.
indirectCall(MutableState, char, char) - Method in interface avrora.stack.AnalyzerPolicy
  The `indirectCall()` method is called by the abstract interpreter when it encounters an indirect call within the program.
indirectCall(MutableState, char, char, char) - Method in interface avrora.stack.AnalyzerPolicy
  The `indirectCall()` method is called by the abstract interpreter when it encounters an indirect call within the program.
indirectJump(MutableState, char, char) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `indirectJump()` method is called by the abstract interpreter when it encounters an indirect jump within the program.
indirectJump(MutableState, char, char, char) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `indirectJump()` method is called by the abstract interpreter when it encounters an indirect jump within the program.
indirectJump(MutableState, char, char) - Method in interface avrora.stack.AnalyzerPolicy
  The `indirectJump()` method is called by the abstract interpreter when it encounters an indirect jump within the program.
indirectJump(MutableState, char, char, char) - Method in interface avrora.stack.AnalyzerPolicy
  The `indirectJump()` method is called by the abstract interpreter when it encounters an indirect jump within the program.
info - Variable in class avrora.sim.mcu.RegisterLayout
info - Variable in class avrora.stack.StateCache.State
init - Variable in class avrora.core.isdl.ast.DeclStmt
  The `init` field stores a reference to the expression which is evaluated to give an initial value to the local.
init(Options, String[]) - Static method in class avrora.gui.AvroraGui
  This function should be called by VisualAction to actually init the static reference to a physical AvroraGUI object
initValues() - Method in class avrora.sim.mcu.ATMegaFamily.Timer1
initValues() - Method in class avrora.sim.mcu.ATMegaFamily.Timer3
initValues() - Method in class avrora.sim.mcu.Timer16Bit
initializeConnections() - Method in class avrora.sim.platform.PinConnect
  Initialize the connections with a default topology of a chain with connections on the north and south ports
initializeMaps() - Method in class avrora.core.isdl.gen.InterpreterGenerator
initializeOperandMap(CodeRegion) - Method in class avrora.core.isdl.gen.InterpreterGenerator
initializeRegisterMap() - Method in class avrora.core.isdl.gen.CodemapGenerator
inline - Variable in class avrora.core.isdl.SubroutineDecl
inlineCall(Token, SubroutineDecl, List) - Method in class avrora.core.isdl.gen.Inliner
inner(Expr, int) - Method in class avrora.core.isdl.gen.PrettyPrinter
innerClassName - Variable in class avrora.core.isdl.InstrDecl
innerLoop - Variable in class avrora.sim.BaseInterpreter
  The `innerLoop` field is a boolean that is used internally in the implementation of the interpreter.
innerLoop - Variable in class avrora.sim.clock.StepSynchronizer
innerString(Expr) - Method in class avrora.core.isdl.ast.Expr
  The `innerString()` method is a utility to embed an expression in parentheses only if its precedence is less than the precedence of this expression.
inputReady() - Method in class avrora.sim.platform.PinWire
inputStream - Variable in class avrora.core.isdl.parser.SimpleCharStream
inputStream - Variable in class avrora.syntax.atmel.SimpleCharStream
inputStream - Variable in class avrora.syntax.gas.SimpleCharStream
inputStream - Variable in class avrora.syntax.objdump.SimpleCharStream
inputStream - Variable in class avrora.test.probes.SimpleCharStream
input_stream - Variable in class avrora.core.isdl.parser.ISDLParserTokenManager
input_stream - Variable in class avrora.syntax.atmel.AtmelParserTokenManager
input_stream - Variable in class avrora.syntax.gas.GASParserTokenManager
input_stream - Variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
input_stream - Variable in class avrora.test.probes.ProbeParserTokenManager
insertEvent(Simulator.Event, long) - Method in class avrora.sim.Simulator
  The `insertEvent()` method inserts an event into the event queue of the simulator with the specified delay in clock cycles.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.Clock
  The `insertEvent()` method inserts an event into the event queue of the clock with the specified delay in clock cycles.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.ClockPrescaler
  The `insertEvent()` method inserts an event into the event queue of the clock with the specified delay in clock cycles.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.DeltaQueue
  The `add` method adds an event to be executed in the future.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.DerivedClock
  The `insertEvent()` method inserts an event into the event queue of the clock with the specified delay in clock cycles.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.MainClock
  The `insertEvent()` method inserts an event into the event queue of the clock with the specified delay in clock cycles.
insertEvent(Simulator.Event, long) - Method in class avrora.sim.clock.SystemClock
  The `insertEvent()` method inserts an event into the event queue of the clock with the specified delay in clock cycles.
insertExceptionWatch(Simulator.ExceptionWatch) - Method in class avrora.sim.BaseInterpreter
  The `insertExceptionWatch()` method registers an ExceptionWatch to listen for exceptional conditions in the machine.
insertExceptionWatch(Simulator.ExceptionWatch) - Method in class avrora.sim.Simulator
  The `insertExceptionWatch()` method registers an `ExceptionWatch` instance.
insertIORWatch(Simulator.IORWatch, int) - Method in class avrora.sim.BaseInterpreter
  The `insertIORWatch()` method is used internally to insert a watch on an IO register.
insertIORWatch(Simulator.IORWatch, int) - Method in class avrora.sim.Simulator
  The `insertIORWatch()` method allows an IO register watch to be inserted on an IO register.
insertInterruptProbe(Simulator.InterruptProbe, int) - Method in class avrora.sim.Simulator
  The `insertInterruptProbe()` method inserts an interrupt probe on an interrupt.
insertProbe(Simulator.Probe, int) - Method in class avrora.sim.BaseInterpreter
  The `insertProbe()` method is used internally to insert a probe on a particular instruction.
insertProbe(Simulator.Probe) - Method in class avrora.sim.BaseInterpreter
  The `insertProbe()` method allows a probe to be inserted that is executed before and after every instruction that is executed by the simulator
insertProbe(int, Simulator.Probe) - Method in class avrora.sim.CodeSegment
  The `insertProbe()` method inserts a probe on an instruction at the specified address.
insertProbe(FiniteStateMachine.Probe) - Method in class avrora.sim.FiniteStateMachine
  The `insertProbe()` method allows the insertion of a probe for each state transition of this finite state machine.
insertProbe(FiniteStateMachine.Probe, int) - Method in class avrora.sim.FiniteStateMachine
  The `insertProbe()` method allows the insertion of a probe for transitions that involve a particular state, either transitioning from this state or from this state.
insertProbe(Simulator.InterruptProbe, int) - Method in class avrora.sim.InterruptTable
  The `insertProbe()` method inserts an interrupt probe on the specified interrupt.
insertProbe(Simulator.InterruptProbe) - Method in class avrora.sim.InterruptTable
  The `insertProbe()` method inserts a global probe on all of the interrupts.
insertProbe(Simulator.Probe) - Method in class avrora.sim.Simulator
  The `insertProbe()` method allows a probe to be inserted that is executed before and after every instruction that is executed by the simulator
insertProbe(Simulator.Probe, int) - Method in class avrora.sim.Simulator
  The `insertProbe()` method allows a probe to be inserted at a particular address in the program that corresponds to an instruction.
insertProbe(Radio.RadioProbe) - Method in class avrora.sim.radio.CC1000Radio
  The `insertProbe()` method inserts a probe into a radio.
insertProbe(Radio.RadioProbe) - Method in interface avrora.sim.radio.Radio
  The `insertProbe()` method inserts a probe into a radio.
insertTimeout(long) - Method in class avrora.sim.Simulator
  The `insertTimeout()` method inserts an event into the event queue of the simulator that causes it to stop execution and throw a `Simulator.TimeoutException` when the specified number of clock cycles have expired.
insertWaiter(IntervalSynchronizer.SynchEvent, long) - Method in class avrora.sim.clock.IntervalSynchronizer
insertWatch(Simulator.Watch, int) - Method in class avrora.sim.BaseInterpreter
  The `insertWatch()` method is used internally to insert a watch on a particular memory location.
insertWatch(int, Simulator.Watch) - Method in class avrora.sim.Segment
  The `insertWatch()` allows user code to insert a watch on a particular memory location.
insertWatch(Simulator.Watch, int) - Method in class avrora.sim.Simulator
  The `insertWatch()` method allows a watch to be inserted at a memory location.
install(Microcontroller) - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
install(Microcontroller) - Method in interface avrora.sim.radio.Radio.RadioController
  Installs this Controller into a microcontroller.
installDevices() - Method in class avrora.sim.mcu.ATMega128
installDevices() - Method in class avrora.sim.mcu.ATMega16
installDevices() - Method in class avrora.sim.mcu.ATMega32
installField(String, RegisterSet.Field) - Method in class avrora.sim.mcu.RegisterSet
  The `installField()` method allows device implementations to substitute a new field implementation for the named field.
installIOReg(int, ActiveRegister) - Method in class avrora.sim.BaseInterpreter
  The `installIOReg()` method installs the specified `IOReg` object to the specified IO register number.
installIOReg(String, ActiveRegister) - Method in class avrora.sim.mcu.AtmelInternalDevice
installIOReg(String, ActiveRegister) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `installIOReg()` method installs an IO register with the specified name.
installIOReg(ActiveRegister, int) - Method in class avrora.sim.mcu.RegisterSet
  The `installIOReg()` method installs a new register at the specified address.
installPins() - Method in class avrora.sim.mcu.ATMega128
installPins() - Method in class avrora.sim.mcu.ATMega16
installPins() - Method in class avrora.sim.mcu.ATMega32
instance - Static variable in class avrora.gui.AvroraGui
  This is the actual instance of AvroraGui that is used.
instantiate() - Method in class avrora.sim.Simulation.Node
  The `instantiate()` method is called when the simulation begins.
instantiate() - Method in class avrora.sim.mcu.RegisterLayout
  The `instantiate()` method creates a new register set that contains the actual register implementations that can be used in simulation.
instantiate() - Method in class avrora.sim.types.SensorSimulation.SensorNode
  The `instantiate()` method of the sensor node extends the default simulation node by creating a new thread to execute the node as well as getting references to the radio and adding it to the radio model, adding an optional start up delay for each node, and connecting the node's sensor input to replay or random data as specified on the command line.
instantiateNodes() - Method in class avrora.sim.Simulation
instantiateNodes() - Method in class avrora.sim.types.SensorSimulation
instr - Variable in class avrora.sim.CodeSegment.ProbedInstr
internalUpdate() - Method in class avrora.gui.GraphEvents
  This function is called by paint and it does what is necessary to update the privateNumbers vector
internalUpdate() - Method in class avrora.gui.GraphNumbers
  This function is called by paint and it does what is necessary to update the privateNumbers vector returns true if it actually got some numbers, otherwise returns false It might also be called by paint thread
interpreter - Variable in class avrora.sim.InterruptTable
interpreter - Variable in class avrora.sim.Segment
interpreter - Variable in class avrora.sim.Simulator
  The `interpreter` field stores a reference to the instruction set interpreter.
interpreter - Variable in class avrora.sim.mcu.ATMegaFamily.FlagRegister
interpreter - Variable in class avrora.sim.mcu.ATMegaFamily.MaskRegister
interpreter - Variable in class avrora.sim.mcu.AtmelInternalDevice
interpreter - Variable in class avrora.sim.mcu.AtmelMicrocontroller
interrupt(MutableState, int) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `interrupt()` is called by the abstract interrupt when it encounters a place in the program when an interrupt might occur.
interrupt(MutableState, int) - Method in interface avrora.stack.AnalyzerPolicy
  The `interrupt()` is called by the abstract interrupt when it encounters a place in the program when an interrupt might occur.
interruptAssignments - Variable in class avrora.sim.mcu.MicrocontrollerProperties
interruptBase - Variable in class avrora.sim.BaseInterpreter
interrupt_name - Variable in class avrora.sim.mcu.MicrocontrollerProperties
interrupts - Variable in class avrora.sim.BaseInterpreter
interval(int, int) - Static method in class avrora.util.StringUtil
invalidRead(String, int) - Method in class avrora.monitors.GDBServer.GDBMonitor.ExceptionWatch
invalidRead(String, int) - Method in interface avrora.sim.Simulator.ExceptionWatch
  The `invalidRead()` method is invoked when an instruction attempts to read from an out-of-bounds memory location.
invalidRead(String, int) - Method in class avrora.sim.util.MulticastExceptionWatch
invalidWrite(String, int, byte) - Method in class avrora.monitors.GDBServer.GDBMonitor.ExceptionWatch
invalidWrite(String, int, byte) - Method in interface avrora.sim.Simulator.ExceptionWatch
  The `invalidWrite()` method is invoked when an instruction attempts to write to a read-only or out-of-bounds memory location.
invalidWrite(String, int, byte) - Method in class avrora.sim.util.MulticastExceptionWatch
invalidateBlock(int) - Method in class avrora.sim.dbbc.DBBC
  The `invalidateBlock()` method invalidates any compiled copies of the block that contains the specified program address.
invert - Variable in class avrora.sim.radio.Channel
invoke(int) - Method in interface avrora.sim.InterruptTable.Notification
invoke(int) - Method in class avrora.sim.mcu.ADC.ControlRegister
invoke(int) - Method in class avrora.sim.mcu.ATMegaFamily.FlagBit
invoke(int) - Method in class avrora.sim.mcu.SPI
ioreg - Variable in class avrora.sim.ProbedActiveRegister
ioregAssignments - Variable in class avrora.sim.mcu.RegisterLayout
  The `ioregAssignments` field stores a reference to a hashmap from IO register names to their addresses.
ioreg_length - Variable in class avrora.sim.mcu.RegisterLayout
  The `ioreg_length` field stores the length of each register in bits.
ioreg_name - Variable in class avrora.sim.mcu.MicrocontrollerProperties
ioreg_num - Variable in class avrora.sim.ProbedActiveRegister
ioreg_size - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `ioreg_size` field stores the number of IO registers on this microcontroller.
ioreg_size - Variable in class avrora.sim.mcu.RegisterLayout
  The `ioreg_size` field stores the number of IO registers on this microcontroller.
ioregs - Variable in class avrora.sim.BaseInterpreter
isBitRangeExpr() - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `isBitRangeExpr()` method tests whether the expression is an access of a range of bits.
isBitRangeExpr() - Method in class avrora.core.isdl.ast.Expr
  The `isBitRangeExpr()` method tests whether the expression is an access of a range of bits.
isConditional() - Method in class avrora.core.isdl.EncodingDecl
isConstant() - Method in class avrora.core.isdl.dep.StateUse.Index.Constant
isConstant() - Method in class avrora.core.isdl.dep.StateUse.Index
  The `isConstant()` method returns whether this expr is a constant that is not dependent on either operands to the instruction or runtime values
isConstantExpr() - Method in class avrora.core.isdl.ast.Arith.BinOp
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e. it is reducable to a constant and has no references to variables, maps, etc).
isConstantExpr() - Method in class avrora.core.isdl.ast.Arith.UnOp
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e. it is reducable to a constant and has no references to variables, maps, etc).
isConstantExpr() - Method in class avrora.core.isdl.ast.BitExpr
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e.
isConstantExpr() - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e.
isConstantExpr() - Method in class avrora.core.isdl.ast.Expr
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e.
isConstantExpr() - Method in class avrora.core.isdl.ast.Literal
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e.
isConstantExpr() - Method in class avrora.core.isdl.ast.Logical.BinOp
  The `isConstantExpr()` method tests whether this expression is a constant expression (i.e. it is reducable to a constant and has no references to variables, maps, etc).
isConstantExpr() - Method in class avrora.core.isdl.ast.Logical.UnOp
isDataSegment() - Method in class avrora.core.Program.DataLabel
  The `isDataSegment()` method returns whether this label refers to the data segment.
isDataSegment() - Method in class avrora.core.Program.Location
  The `isDataSegment()` method returns whether this label refers to the data segment.
isDisplayed - Static variable in class avrora.gui.VisualRadioMonitor
isEEPromSegment() - Method in class avrora.core.Program.EEPromLabel
  The `isEEPromSegment()` method returns whether this label refers to the eeprom segment.
isEEPromSegment() - Method in class avrora.core.Program.Location
  The `isEEPromSegment()` method returns whether this label refers to the eeprom segment.
isEmpty() - Method in class avrora.sim.util.TransactionalList
  The `isEmpty()` method tests whether this list is empty.
isEmpty() - Method in class avrora.stack.StateCache.Set
isEmpty() - Method in class avrora.util.profiling.Database
isEnabled(int) - Method in class avrora.sim.InterruptTable
  The `isEnabled()` method checks whether the specified interrupt is currently enabled.
isExplored(StateCache.State) - Method in class avrora.stack.StateTransitionGraph
  The `isExplored()` method tests whether a given state has been explored before.
isFrontier(StateCache.State) - Method in class avrora.stack.StateTransitionGraph
  The `isFrontier()` method tests whether a given state is currently in the frontier list of the state transition graph.
isHexDigit(char) - Static method in class avrora.util.StringUtil
  The `isHexDigit()` method tests whether the given character corresponds to one of the characters used in the hexadecimal representation (i.e. is '0'-'9' or 'a'-'b', case insensitive.
isIORegisterRead(int) - Method in class avrora.stack.isea.ISEState
isImmediate() - Method in class avrora.core.isdl.CodeRegion.Operand
isImmediate() - Method in class avrora.core.isdl.OperandDecl.Immediate
isImmediate() - Method in class avrora.core.isdl.OperandDecl
isInAnyProcedure(ControlFlowGraph.Block) - Method in class avrora.core.ProcedureMap
  The `isInAnyProcedure()` method queries whether the specified basic block is reachable from any procedure entry point in the program.
isInternalError() - Method in class avrora.test.TestResult.InternalError
isInternalError() - Method in class avrora.test.TestResult
isKnown() - Method in class avrora.core.isdl.dep.StateUse.Index.UNKNOWN
isKnown() - Method in class avrora.core.isdl.dep.StateUse.Index
  The `isKnown()` method returns whether this expr is known statically given the instruction operands.
isListening() - Method in class avrora.sim.radio.CC1000Radio.Receiver
isListening() - Method in class avrora.sim.radio.CC1000Radio
isListening() - Method in interface avrora.sim.radio.Radio
isLiteral() - Method in class avrora.core.isdl.ast.Expr
  The `isLiteral()` method tests whether this expression is a known constant directly (i.e. a literal).
isLiteral() - Method in class avrora.core.isdl.ast.Literal
isMalformed() - Method in class avrora.test.TestResult.Malformed
isMalformed() - Method in class avrora.test.TestResult
isMap() - Method in class avrora.core.isdl.ast.ConversionExpr
  The `isMap()` method tests whether this expression is a reference to an element of a map.
isMap() - Method in class avrora.core.isdl.ast.Expr
  The `isMap()` method tests whether this expression is a reference to an element of a map.
isMap() - Method in class avrora.core.isdl.ast.MapExpr
  The `isMap()` method tests whether this expression is a reference to an element of a map.
isOctalDigit(char) - Static method in class avrora.util.StringUtil
isPaused() - Method in class avrora.sim.Simulation
  The `isPaused()` method checks whether the simulation is currently paused.
isPending(int) - Method in class avrora.sim.InterruptTable
  The `isPending()` method checks whether the specified interrupt is currently pending.
isPosted(int) - Method in class avrora.sim.InterruptTable
  The `isPosted()` method checks whether the specified interrupt is currently posted.
isProgramSegment() - Method in class avrora.core.Program.Location
  The `isProgramSegment()` method returns whether this label refers to the program segment.
isProgramSegment() - Method in class avrora.core.Program.ProgramLabel
  The `isProgramSegment()` method returns whether this label refers to the program segment.
isRead(int) - Method in class avrora.stack.isea.ISEAbstractState
isRegister() - Method in class avrora.core.isdl.CodeRegion.Operand
isRegister() - Method in class avrora.core.isdl.OperandDecl.RegisterSet
isRegister() - Method in class avrora.core.isdl.OperandDecl
isRegisterRead(Register) - Method in class avrora.stack.isea.ISEState
isRunning() - Method in class avrora.sim.Simulation
  The `isRunning()` method checks whether the simulation is currently running.
isSharedBetweenProcedures(ControlFlowGraph.Block) - Method in class avrora.core.ProcedureMap
  The `isSharedBetweenProcedures()` method queries whether the specified basic block is reachable from more than one procedure entrypoint.
isSuccess() - Method in class avrora.test.TestResult.TestSuccess
isSuccess() - Method in class avrora.test.TestResult
isSupported(InstrPrototype) - Method in class avrora.sim.mcu.ATMega128
isSupported(InstrPrototype) - Method in class avrora.sim.mcu.ATMega16
isSupported(InstrPrototype) - Method in class avrora.sim.mcu.ATMega32
isSupported(InstrPrototype) - Method in interface avrora.sim.mcu.Microcontroller
  The `isSupported()` method allows a client to query whether a particular instruction is implemented on this hardware device.
isUnexpectedException() - Method in class avrora.test.TestResult.UnexpectedException
isUnexpectedException() - Method in class avrora.test.TestResult
isUnknown(char) - Static method in class avrora.stack.AbstractArithmetic
  The `isKnown()` method tests whether an abstract value represents a single, fully known value.
isVariable() - Method in class avrora.core.isdl.ast.Expr
  The `isVariable()` method tests whether this expression is a single variable use.
isVariable() - Method in class avrora.core.isdl.ast.VarExpr
  The `isVariable()` method tests whether this expression is a direct variable use and is used in copy propagation.
ispaused - Variable in class avrora.gui.SimTimeEvents.PauseEvent
itemSize() - Method in class avrora.syntax.Item.InitializedData
itemSize() - Method in class avrora.syntax.Item.Instruction
itemSize() - Method in class avrora.syntax.Item.UninitializedData
itemSize() - Method in class avrora.syntax.Item
items - Variable in class avrora.util.profiling.Database
iterator() - Method in class avrora.stack.StateCache.Set
iterator() - Method in class avrora.util.ClassMap
  The `iterator()` method returns an interator over the short names (aliases) stored in this map.
iterator(int) - Method in class avrora.util.profiling.Measurements
  The `iterator()` method returns an interator over the measurements, starting with the specified measurement.
iterator(long) - Method in class avrora.util.profiling.TimedMeasurements
  The `iterator()` method returns an interator over the measurements, starting with the specified measurement.
itime - Variable in class avrora.monitors.ProfileMonitor.Monitor
itime - Variable in class avrora.sim.util.ProgramTimeProfiler
  The `itime` field stores the cumulative number of cycles consumed for each instruction in the program.

## J

JMP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
JMP - Static variable in interface avrora.syntax.gas.GASParserConstants
JMP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
javaName(String) - Method in class avrora.sim.dbbc.DBBC
jjFillToken() - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
jjFillToken() - Method in class avrora.syntax.atmel.AtmelParserTokenManager
jjFillToken() - Method in class avrora.syntax.atmel.FileMarkingTokenManager
jjFillToken() - Method in class avrora.syntax.gas.FileMarkingTokenManager
jjFillToken() - Method in class avrora.syntax.gas.GASParserTokenManager
jjFillToken() - Method in class avrora.syntax.objdump.FileMarkingTokenManager
jjFillToken() - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
jjFillToken() - Method in class avrora.test.probes.ProbeParserTokenManager
jj_nt - Variable in class avrora.core.isdl.parser.ISDLParser
jj_nt - Variable in class avrora.syntax.atmel.AtmelParser
jj_nt - Variable in class avrora.syntax.gas.GASParser
jj_nt - Variable in class avrora.syntax.objdump.ObjDumpParser
jj_nt - Variable in class avrora.test.probes.ProbeParser
jjnewLexState - Static variable in class avrora.core.isdl.parser.ISDLParserTokenManager
jjnewLexState - Static variable in class avrora.syntax.atmel.AtmelParserTokenManager
jjnewLexState - Static variable in class avrora.syntax.gas.GASParserTokenManager
jjnewLexState - Static variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
jjnewLexState - Static variable in class avrora.test.probes.ProbeParserTokenManager
jjstrLiteralImages - Static variable in class avrora.core.isdl.parser.ISDLParserTokenManager
jjstrLiteralImages - Static variable in class avrora.syntax.atmel.AtmelParserTokenManager
jjstrLiteralImages - Static variable in class avrora.syntax.gas.GASParserTokenManager
jjstrLiteralImages - Static variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
jjstrLiteralImages - Static variable in class avrora.test.probes.ProbeParserTokenManager
join() - Method in class avrora.sim.Simulation
  The `join()` method waits for the simulation to terminate before returning.
join() - Method in class avrora.sim.clock.IntervalSynchronizer
  The `join()` method will block the caller until all of the threads in this synchronization interval have terminated, either through `stop()` being called, or terminating normally such as through a timeout.
join() - Method in class avrora.sim.clock.StepSynchronizer
  The `join()` method will block the caller until all of the threads in this synchronization interval have terminated, either through `stop()` being called, or terminating normally such as through a timeout.
join() - Method in class avrora.sim.clock.Synchronizer
  The `join()` method will block the caller until all of the threads in this synchronization interval have terminated, either through `stop()` being called, or terminating normally such as through a timeout.
join() - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `join()` method will block the caller until all of the threads in this synchronization interval have terminated, either through `stop()` being called, or terminating normally such as through a timeout.
jump(int) - Method in class avrora.stack.isea.ISEInterpreter
justReturnedFromInterrupt - Variable in class avrora.sim.BaseInterpreter
  The `justReturnedFromInterrupt` field is used internally in maintaining the invariant stated in the hardware manual that at least one instruction following a return from an interrupt is executed before another interrupt can be processed.

## K

Kind() - Method in class avrora.core.isdl.parser.ISDLParser
kind - Variable in class avrora.core.isdl.OperandDecl
kind - Variable in class avrora.core.isdl.parser.Token
  An integer that describes the kind of this token.
kind - Variable in class avrora.syntax.atmel.Token
  An integer that describes the kind of this token.
kind - Variable in class avrora.syntax.gas.Token
  An integer that describes the kind of this token.
kind - Variable in class avrora.syntax.objdump.Token
  An integer that describes the kind of this token.
kind - Variable in class avrora.test.probes.Token
  An integer that describes the kind of this token.
knownBitsOf(char) - Static method in class avrora.stack.AbstractArithmetic
  The `knownBitsOf()` method returns computes the concrete value from the given abstract value where all unknown bits of the abstract value are set to zero.
knownVal(byte) - Static method in class avrora.stack.AbstractArithmetic
  The `knownVal()` method creates a canonical abstract value from the given concrete value.
knownValues - Variable in class avrora.util.Options

## L

LABEL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LARGEST_INSTR - Static variable in class avrora.core.isdl.gen.DisassemblerGenerator
LBRACKET - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LBRACKET - Static variable in interface avrora.test.probes.ProbeParserConstants
LCDScreen - class avrora.sim.platform.LCDScreen.
  Debug class.
LCDScreen() - Constructor for class avrora.sim.platform.LCDScreen
  The constructor for the `LCDScreen` class initializes a 40x2 character array that represents the character area of the LCD screen.
LD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LD - Static variable in interface avrora.syntax.gas.GASParserConstants
LD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LDD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LDD - Static variable in interface avrora.syntax.gas.GASParserConstants
LDD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LDI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LDI - Static variable in interface avrora.syntax.gas.GASParserConstants
LDI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LDS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LDS - Static variable in interface avrora.syntax.gas.GASParserConstants
LDS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LED - class avrora.sim.platform.LED.
  The `LED` class implements an LED (light emitting diode) that can be hooked up to a pin on the microcontroller.
LED(Simulator, int, String) - Constructor for class avrora.sim.platform.LED
LESS - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LESSEQ - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LETTER - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LETTER - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LETTER - Static variable in interface avrora.syntax.gas.GASParserConstants
LETTER - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LETTER - Static variable in interface avrora.test.probes.ProbeParserConstants
LICENSE - Static variable in class avrora.Main
LIST - Static variable in interface avrora.syntax.gas.GASParserConstants
LMA - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LO8 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LO8 - Static variable in interface avrora.syntax.gas.GASParserConstants
LOCAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LOCATIONS - Variable in class avrora.monitors.MemoryMonitor
LOCATION_COMPARATOR - Static variable in class avrora.core.Program
  The `LOCATION_COMPARATOR` comparator is used in order to sort locations in the program from lowest address to highest address.
LOCATION_COMPARATOR - Static variable in class avrora.core.SourceMapping
  The `LOCATION_COMPARATOR` comparator is used in order to sort locations in the program from lowest address to highest address.
LOCK - Static variable in class avrora.sim.radio.CC1000Radio
LOCK_reg - Variable in class avrora.sim.radio.CC1000Radio
LOG2 - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LOG2 - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LONG - Static variable in interface avrora.syntax.gas.GASParserConstants
LONG_REPORT - Static variable in class avrora.test.AutomatedTester
LOW - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LOW - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LOWER_ADDRESS - Variable in class avrora.monitors.MemoryMonitor
LPAREN - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
LPAREN - Static variable in class avrora.util.StringUtil
LPM - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LPM - Static variable in interface avrora.syntax.gas.GASParserConstants
LPM - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LSL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LSL - Static variable in interface avrora.syntax.gas.GASParserConstants
LSL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LSR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LSR - Static variable in interface avrora.syntax.gas.GASParserConstants
LSR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
LWRD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
LWRD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
Label() - Method in class avrora.syntax.atmel.AtmelParser
Label() - Method in class avrora.syntax.gas.GASParser
Label() - Method in class avrora.syntax.objdump.ObjDumpParser
LabelMapping - class avrora.core.LabelMapping.
  The `LabelMapping` class is a simple implementation of the `SourceMapping` class that maps labels to addresses in the program.
LabelMapping(Program) - Constructor for class avrora.core.LabelMapping
  The constructor for the `LabelMapping` class constructs a new instance of this source mapping for the specified program.
LandExpr() - Method in class avrora.syntax.atmel.AtmelParser
LandExpr() - Method in class avrora.syntax.gas.GASParser
LexicalError(boolean, int, int, int, String, char) - Static method in class avrora.core.isdl.parser.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in class avrora.syntax.atmel.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in class avrora.syntax.gas.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in class avrora.syntax.objdump.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LexicalError(boolean, int, int, int, String, char) - Static method in class avrora.test.probes.TokenMgrError
  Returns a detailed message for the Error when it is thrown by the token manager to indicate a lexical error.
LightSensor - class avrora.sim.platform.sensors.LightSensor.
  The `LightSensor` class implements a light sensor like that present on the Mica2.
LightSensor(AtmelMicrocontroller, int, String, String) - Constructor for class avrora.sim.platform.sensors.LightSensor
ListDirective() - Method in class avrora.syntax.atmel.AtmelParser
ListDirective() - Method in class avrora.syntax.gas.GASParser
Literal - class avrora.core.isdl.ast.Literal.
  The `Literal` class represents a literal (constant value) as part of an expression.
Literal(Token) - Constructor for class avrora.core.isdl.ast.Literal
Literal() - Method in class avrora.core.isdl.parser.ISDLParser
Literal.BoolExpr - class avrora.core.isdl.ast.Literal.BoolExpr.
  The `BoolExpr` inner class represents a boolean literal that has a known, constant value (true or false).
Literal.BoolExpr(Token) - Constructor for class avrora.core.isdl.ast.Literal.BoolExpr
  The constructor of the `BoolExpr` class evaluates the token's string value as a boolean and stores it in the publicly accessable `value` field, as well as storing a reference to the original token
Literal.BoolExpr(boolean) - Constructor for class avrora.core.isdl.ast.Literal.BoolExpr
  The constructor of the `BoolExpr` class evaluates the token's string value as a boolean and stores it in the publicly accessable `value` field, as well as storing a reference to the original token
Literal.IntExpr - class avrora.core.isdl.ast.Literal.IntExpr.
  The `IntExpr` inner class represents an integer literal that has a known, constant value.
Literal.IntExpr(Token) - Constructor for class avrora.core.isdl.ast.Literal.IntExpr
  The constructor of the `IntExpr` class evaluates the token's string value to an integer and stores it in the publicly accessable `value` field, as well as storing a reference to the original token.
Literal.IntExpr(int) - Constructor for class avrora.core.isdl.ast.Literal.IntExpr
  The constructor of the `IntExpr` class evaluates the token's string value to an integer and stores it in the publicly accessable `value` field, as well as storing a reference to the original token.
LoadableProgram - class avrora.core.LoadableProgram.
  The `LoadableProgram` class represents a reference to a program on the disk.
LoadableProgram(File) - Constructor for class avrora.core.LoadableProgram
  The constructor for the `LoadableProgram` class creates a new instance with a reference to the file on the disk.
LoadableProgram(String) - Constructor for class avrora.core.LoadableProgram
  The constructor for the `LoadableProgram` class creates a new instance with a reference to the file on the disk.
LocalAirImpl - class avrora.sim.radio.freespace.LocalAirImpl.
  Implementation of Local Air
LocalAirImpl(Radio, Position, Synchronizer) - Constructor for class avrora.sim.radio.freespace.LocalAirImpl
  new local air
LocalDecl() - Method in class avrora.core.isdl.parser.ISDLParser
Logical - class avrora.core.isdl.ast.Logical.
  The `Logical` class is a container for classes that represent expressions that produce booleans in the IR.
Logical() - Constructor for class avrora.core.isdl.ast.Logical
Logical.AndExpr - class avrora.core.isdl.ast.Logical.AndExpr.
  The `AndExpr` inner class represents the logical AND of two boolean values that produces a new boolean value.
Logical.AndExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.AndExpr
Logical.BinOp - class avrora.core.isdl.ast.Logical.BinOp.
  The `BinOp` inner class represents an operation on two values with an infix binary operation that produces a boolean.
Logical.BinOp(int, Expr, String, Expr) - Constructor for class avrora.core.isdl.ast.Logical.BinOp
  The constructor of the `BinOp` class initializes the public final fields that form the structure of this expression.
Logical.EquExpr - class avrora.core.isdl.ast.Logical.EquExpr.
  The `EquExpr` inner class represents a comparison for equality of two integer values that produces a single boolean value.
Logical.EquExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.EquExpr
Logical.GreaterEquExpr - class avrora.core.isdl.ast.Logical.GreaterEquExpr.
  The `GreaterEquExpr` inner class represents a comparison of two integer values that produces a single boolean value that is true if and only if the first operand is greater than or equal to the second operand.
Logical.GreaterEquExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.GreaterEquExpr
Logical.GreaterExpr - class avrora.core.isdl.ast.Logical.GreaterExpr.
  The `GreaterExpr` inner class represents a comparison of two integer values that produces a single boolean value that is true if and only if the first operand is greater than the second operand.
Logical.GreaterExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.GreaterExpr
Logical.LessEquExpr - class avrora.core.isdl.ast.Logical.LessEquExpr.
  The `LessEquExpr` inner class represents a comparison of two integer values that produces a single boolean value that is true if and only if the first operand is less than or equal to the second operand.
Logical.LessEquExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.LessEquExpr
Logical.LessExpr - class avrora.core.isdl.ast.Logical.LessExpr.
  The `LessExpr` inner class represents a comparison of two integer values that produces a single boolean value that is true if and only if the first operand is less than the second operand.
Logical.LessExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.LessExpr
Logical.NequExpr - class avrora.core.isdl.ast.Logical.NequExpr.
  The `NequExpr` inner class represents a comparison for inequality of two integer values that produces a single boolean value.
Logical.NequExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.NequExpr
Logical.NotExpr - class avrora.core.isdl.ast.Logical.NotExpr.
  The `NotExpr` inner class represents the logical negation of a single boolean value that produces a new integer value.
Logical.NotExpr(Expr) - Constructor for class avrora.core.isdl.ast.Logical.NotExpr
Logical.OrExpr - class avrora.core.isdl.ast.Logical.OrExpr.
  The `OrExpr` inner class represents the logical OR of two boolean values that produces a new boolean value.
Logical.OrExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.OrExpr
Logical.UnOp - class avrora.core.isdl.ast.Logical.UnOp.
  The `UnOp` inner class represents an operation on a single boolean value.
Logical.UnOp(String, Expr) - Constructor for class avrora.core.isdl.ast.Logical.UnOp
  The constructor of the `UnOp` class initializes the public final fields that form the structure of this expression.
Logical.XorExpr - class avrora.core.isdl.ast.Logical.XorExpr.
  The `XorExpr` inner class represents the logical XOR of two boolean values that produces a new boolean value.
Logical.XorExpr(Expr, Expr) - Constructor for class avrora.core.isdl.ast.Logical.XorExpr
LorExpr() - Method in class avrora.syntax.atmel.AtmelParser
LorExpr() - Method in class avrora.syntax.gas.GASParser
labels - Variable in class avrora.core.LabelMapping
labels - Variable in class avrora.syntax.Module
last - Variable in class avrora.syntax.Expr.Func
layout - Variable in class avrora.sim.mcu.MicrocontrollerProperties
layout - Variable in class avrora.sim.mcu.RegisterSet
leaveSleepMode() - Method in class avrora.sim.GenInterpreter
  time to wake up
left - Variable in class avrora.core.isdl.ast.Arith.BinOp
  The `left` field stores a reference to the expression that is the left operand of the binary operation.
left - Variable in class avrora.core.isdl.ast.Logical.BinOp
  The `left` field stores a reference to the expression that is the left operand of the binary operation.
left - Variable in class avrora.syntax.Expr.BinOp
  The `left` field records an expression that represents the operand on the left side of the operator.
left - Variable in class avrora.syntax.SyntacticOperand
leftJustify(long, int) - Static method in class avrora.util.StringUtil
  The `leftJustify()` method pads a string to a specified length by adding spaces on the right, thus justifying the string to the left margin.
leftJustify(float, int) - Static method in class avrora.util.StringUtil
  The `leftJustify()` method pads a string to a specified length by adding spaces on the right, thus justifying the string to the left margin.
leftJustify(String, int) - Static method in class avrora.util.StringUtil
  The `leftJustify()` method pads a string to a specified length by adding spaces on the right, thus justifying the string to the left margin.
length() - Method in class avrora.syntax.ExprList
lexStateNames - Static variable in class avrora.core.isdl.parser.ISDLParserTokenManager
lexStateNames - Static variable in class avrora.syntax.atmel.AtmelParserTokenManager
lexStateNames - Static variable in class avrora.syntax.gas.GASParserTokenManager
lexStateNames - Static variable in class avrora.syntax.objdump.ObjDumpParserTokenManager
lexStateNames - Static variable in class avrora.test.probes.ProbeParserTokenManager
liftExpr(Expr, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
lightSensor - Variable in class avrora.sim.platform.Mica2
line - Variable in class avrora.core.isdl.parser.SimpleCharStream
line - Variable in class avrora.syntax.ProgramPoint
line - Variable in class avrora.syntax.atmel.SimpleCharStream
line - Variable in class avrora.syntax.gas.SimpleCharStream
line - Variable in class avrora.syntax.objdump.SimpleCharStream
line - Variable in class avrora.test.probes.SimpleCharStream
linelist(List) - Static method in class avrora.util.StringUtil
linelist(StringBuffer, List) - Static method in class avrora.util.StringUtil
load() - Method in class avrora.core.LoadableProgram
  The `load()` method loads (or reloads) the program from the disk.
load(Program) - Method in class avrora.sim.CodeSegment
  The `load()` method loads a program into the flash memory, writing the binary machine code and the disassembled instructions.
loadProgram(String[]) - Static method in class avrora.Main
  The `readProgram()` method reads a program from the command line arguments given the format specified at the command line.
loader - Variable in class avrora.sim.dbbc.DBBC
location - Variable in class avrora.monitors.EnergyProfiler.EnergyProfile
  `location`: name and address of this procedure
logicalAnd(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `logicalAnd` method computes the logical bitwise AND of two abstract values.
longReport() - Method in class avrora.test.TestResult.ExpectedPass
longReport() - Method in class avrora.test.TestResult.IncorrectError
longReport() - Method in class avrora.test.TestResult.InternalError
longReport() - Method in class avrora.test.TestResult.TestSuccess
longReport() - Method in class avrora.test.TestResult.UnexpectedException
longReport() - Method in class avrora.test.TestResult
lookingAhead - Variable in class avrora.core.isdl.parser.ISDLParser
lookingAhead - Variable in class avrora.syntax.atmel.AtmelParser
lookingAhead - Variable in class avrora.syntax.gas.GASParser
lookingAhead - Variable in class avrora.syntax.objdump.ObjDumpParser
lookup(String) - Method in class avrora.core.isdl.gen.ConstantPropagator.ConstantEnvironment
low - Variable in class avrora.core.Instr.InvalidImmediate
  The `low` field stores the lowest value that is allowed for this operand.
low - Variable in class avrora.core.isdl.OperandDecl.Immediate
low(int) - Static method in class avrora.sim.GenInterpreter
low - Variable in class avrora.sim.mcu.ADC.DataRegister
low(short) - Static method in class avrora.util.Arithmetic
low(int) - Static method in class avrora.util.Arithmetic
low - Variable in class avrora.util.Option.Interval
low_addr - Variable in class avrora.sim.util.RangeProfiler
  The `low_addr` stores the lowest address in the range.
low_bit - Variable in class avrora.core.isdl.ast.BitRangeExpr
  The `low_bit` field represents the lowest bit in the range to be extracted, inclusive.
low_bit - Variable in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `low_bit` field stores the lowest bit of the range of bits being assigned.
low_bit - Variable in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `low_bit` field stores the lowest bit of the range of bits being assigned.
lowestBit(long) - Static method in class avrora.util.Arithmetic

## M

MAIN - Static variable in class avrora.sim.radio.CC1000Radio
  Register addresses.
MAIN - Static variable in interface avrora.test.probes.ProbeParserConstants
MAIN_HZ - Static variable in class avrora.sim.platform.Mica2
MAIN_reg - Variable in class avrora.sim.radio.CC1000Radio
  Registers
MATCH - Static variable in class avrora.sim.radio.CC1000Radio
MATCH_reg - Variable in class avrora.sim.radio.CC1000Radio
MAX - Static variable in class avrora.sim.mcu.Timer16Bit
MAX - Static variable in class avrora.sim.mcu.Timer8Bit
MAXCOLORS - Static variable in class avrora.util.Terminal
MAXLINE - Static variable in class avrora.util.Terminal
MAX_BIT_RATE - Static variable in interface avrora.sim.radio.Radio
MAX_STACK - Static variable in class avrora.stack.isea.ISEState
MCU - Variable in class avrora.sim.Simulation
MCUCR - Static variable in interface avrora.stack.IORegisterConstants
MCUCR_reg - Variable in class avrora.sim.mcu.ATMega128
MCUCR_reg - Variable in class avrora.sim.mcu.ATMega16
MCUCR_reg - Variable in class avrora.sim.mcu.ATMega32
MCUCSR - Static variable in interface avrora.stack.IORegisterConstants
MEGABYTES - Static variable in class avrora.actions.AnalyzeStackAction
MGPR_set - Static variable in class avrora.core.Register
MILLIS - Static variable in class avrora.util.StringUtil
MILLISECS_PER_DAY - Static variable in class avrora.util.StringUtil
MILLISECS_PER_HOUR - Static variable in class avrora.util.StringUtil
MILLISECS_PER_MIN - Static variable in class avrora.util.StringUtil
MILLISECS_PER_SEC - Static variable in class avrora.util.StringUtil
MINIMUM_BLOCK_SIZE - Variable in class avrora.sim.dbbc.DBBC
MINS - Static variable in class avrora.util.StringUtil
MIN__VALUE__TICK - Static variable in class avrora.gui.GraphNumbers
MISALIGNED_INSTR - Variable in class avrora.sim.CodeSegment
MODEM0 - Static variable in class avrora.sim.radio.CC1000Radio
MODEM1 - Static variable in class avrora.sim.radio.CC1000Radio
MODEM2 - Static variable in class avrora.sim.radio.CC1000Radio
MODEM_0_reg - Variable in class avrora.sim.radio.CC1000Radio
MODEM_1_reg - Variable in class avrora.sim.radio.CC1000Radio
MODEM_2_reg - Variable in class avrora.sim.radio.CC1000Radio
MODE_ACTIVE - Static variable in class avrora.sim.mcu.AtmelMicrocontroller
MODE_ADCNRED - Static variable in class avrora.sim.mcu.ATMega128
MODE_ADCNRED - Static variable in class avrora.sim.mcu.ATMega16
MODE_ADCNRED - Static variable in class avrora.sim.mcu.ATMega32
MODE_CTC - Static variable in class avrora.sim.mcu.Timer8Bit
MODE_CTC_ICRn - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_CTC_OCRnA - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_EXTSTANDBY - Static variable in class avrora.sim.mcu.ATMega128
MODE_EXTSTANDBY - Static variable in class avrora.sim.mcu.ATMega16
MODE_EXTSTANDBY - Static variable in class avrora.sim.mcu.ATMega32
MODE_FASTPWM - Static variable in class avrora.sim.mcu.Timer8Bit
MODE_FASTPWM_10_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_FASTPWM_8_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_FASTPWM_9_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_FASTPWM_ICRn - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_FASTPWM_OCRnA - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_IDLE - Static variable in class avrora.sim.mcu.ATMega128
MODE_IDLE - Static variable in class avrora.sim.mcu.ATMega16
MODE_IDLE - Static variable in class avrora.sim.mcu.ATMega32
MODE_NORMAL - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_NORMAL - Static variable in class avrora.sim.mcu.Timer8Bit
MODE_POWERDOWN - Static variable in class avrora.sim.mcu.ATMega128
MODE_POWERDOWN - Static variable in class avrora.sim.mcu.ATMega16
MODE_POWERDOWN - Static variable in class avrora.sim.mcu.ATMega32
MODE_POWERSAVE - Static variable in class avrora.sim.mcu.ATMega128
MODE_POWERSAVE - Static variable in class avrora.sim.mcu.ATMega16
MODE_POWERSAVE - Static variable in class avrora.sim.mcu.ATMega32
MODE_PWM - Static variable in class avrora.sim.mcu.Timer8Bit
MODE_PWM_PHASE_CORRECT_10_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWM_PHASE_CORRECT_8_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWM_PHASE_CORRECT_9_BIT - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWM_PNF_ICRn - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWM_PNF_OCRnA - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWN_PHASE_CORRECT_ICRn - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_PWN_PHASE_CORRECT_OCRnA - Static variable in class avrora.sim.mcu.Timer16Bit
MODE_RESERVED1 - Static variable in class avrora.sim.mcu.ATMega128
MODE_RESERVED1 - Static variable in class avrora.sim.mcu.ATMega16
MODE_RESERVED1 - Static variable in class avrora.sim.mcu.ATMega32
MODE_RESERVED2 - Static variable in class avrora.sim.mcu.ATMega128
MODE_RESERVED2 - Static variable in class avrora.sim.mcu.ATMega16
MODE_RESERVED2 - Static variable in class avrora.sim.mcu.ATMega32
MODE_STANDBY - Static variable in class avrora.sim.mcu.ATMega128
MODE_STANDBY - Static variable in class avrora.sim.mcu.ATMega16
MODE_STANDBY - Static variable in class avrora.sim.mcu.ATMega32
MONITORS - Variable in class avrora.sim.Simulation
MONITOR_STATES - Variable in class avrora.actions.AnalyzeStackAction
MONITOR_STATES - Static variable in class avrora.stack.Analyzer
MOV - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
MOV - Static variable in interface avrora.syntax.gas.GASParserConstants
MOV - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
MOVW - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
MOVW - Static variable in interface avrora.syntax.gas.GASParserConstants
MOVW - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
MUL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
MUL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
MUL - Static variable in interface avrora.syntax.gas.GASParserConstants
MUL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
MULS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
MULS - Static variable in interface avrora.syntax.gas.GASParserConstants
MULS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
MULSU - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
MULSU - Static variable in interface avrora.syntax.gas.GASParserConstants
MULSU - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
MULTI_LINE_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
MULTI_LINE_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
Main - class avrora.Main.
  This is the main entrypoint to Avrora.
Main() - Constructor for class avrora.Main
Main(ProbeTest) - Method in class avrora.test.probes.ProbeParser
MainClock - class avrora.sim.clock.MainClock.
  The `MainClock` class represents a clock that has an associated delta queue.
MainClock(String, long) - Constructor for class avrora.sim.clock.MainClock
  The `MainClock()` method creates a main clock with the specified name and frequency.
ManageMonitors - class avrora.gui.ManageMonitors.
  This class manages the dialog boxes for adding a monitor to the simulator.
ManageMonitors() - Constructor for class avrora.gui.ManageMonitors
ManageSimInput - class avrora.gui.ManageSimInput.
  From a high level view, this class handles "input to the simulator," which entails entering files that can be loaded as program as well as specifiying options.
ManageSimInput() - Constructor for class avrora.gui.ManageSimInput
ManageSimTime - class avrora.gui.ManageSimTime.
  From a high level view, the controls what the simulation is doing.
ManageSimTime() - Constructor for class avrora.gui.ManageSimTime
ManageTopology - class avrora.gui.ManageTopology.
  This manages the topology window within the GUI.
ManageTopology() - Constructor for class avrora.gui.ManageTopology
MapAccess() - Method in class avrora.core.isdl.parser.ISDLParser
MapAssignStmt - class avrora.core.isdl.ast.MapAssignStmt.
  The `MapAssignStmt` class represents a statement that is an assignment to an element of a map.
MapAssignStmt(Token, Expr, Expr) - Constructor for class avrora.core.isdl.ast.MapAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapAssignStmt(String, Expr, Expr) - Constructor for class avrora.core.isdl.ast.MapAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapAssignment() - Method in class avrora.core.isdl.parser.ISDLParser
MapAssignmentEnd(Token, Expr) - Method in class avrora.core.isdl.parser.ISDLParser
MapBitAssignStmt - class avrora.core.isdl.ast.MapBitAssignStmt.
  The `MapBitAssignStmt` represents an assignment to a single bit within an element within a map.
MapBitAssignStmt(Token, Expr, Expr, Expr) - Constructor for class avrora.core.isdl.ast.MapBitAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapBitAssignStmt(String, Expr, Expr, Expr) - Constructor for class avrora.core.isdl.ast.MapBitAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapBitRangeAssignStmt - class avrora.core.isdl.ast.MapBitRangeAssignStmt.
  The `MapBitRangeAssignment` class represents an assignment to a range of bits of an element within a map.
MapBitRangeAssignStmt(Token, Expr, Token, Token, Expr) - Constructor for class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapBitRangeAssignStmt(Token, Expr, int, int, Expr) - Constructor for class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapBitRangeAssignStmt(String, Expr, int, int, Expr) - Constructor for class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The constructor for the `MapAssignStmt` class initializes the public final fields in this class that refer to the elements of the assignment.
MapExpr - class avrora.core.isdl.ast.MapExpr.
  The `MapExpr` class represents an expression that is an access of an element within a map.
MapExpr(Token, Expr) - Constructor for class avrora.core.isdl.ast.MapExpr
  The constructor of the `MapExpr` class initializes the publicly accessable fields that represent the members of this expression
MapExpr(String, Expr) - Constructor for class avrora.core.isdl.ast.MapExpr
  The constructor of the `MapExpr` class initializes the publicly accessable fields that represent the members of this expression
Measurements - class avrora.util.profiling.Measurements.
  The `Measurements` class implements a simple array-like data structure that collects a large list of integers and supports iterating over that list.
Measurements() - Constructor for class avrora.util.profiling.Measurements
  The default constructor for the `Measurements` class creates a new instance where the fragment size is 500.
Measurements(int) - Constructor for class avrora.util.profiling.Measurements
  This constructor for the `Measurements` class creates a new instance with the specified fragment size.
Measurements.Iterator - class avrora.util.profiling.Measurements.Iterator.
MemoryCounter - class avrora.sim.util.MemoryCounter.
  The `MemoryCounter` is the simplest example of memory profiling functionality.
MemoryCounter() - Constructor for class avrora.sim.util.MemoryCounter
MemoryMatrixProfiler - class avrora.sim.util.MemoryMatrixProfiler.
  The `MemoryMatrixProfiler` class collects information about a program's usage of memory.
MemoryMatrixProfiler(Program, int) - Constructor for class avrora.sim.util.MemoryMatrixProfiler
  The constructor for the `MemoryMatrixProfiler` class creates a new memory probe that can be inserted into the simulator to record the full memory access statistics of the program.
MemoryMonitor - class avrora.monitors.MemoryMonitor.
  The `MemoryMonitor` class implements a monitor that collects information about how the program accesses the data memory over its execution.
MemoryMonitor() - Constructor for class avrora.monitors.MemoryMonitor
MemoryMonitor.Monitor - class avrora.monitors.MemoryMonitor.Monitor.
MemoryProfiler - class avrora.sim.util.MemoryProfiler.
MemoryProfiler(int) - Constructor for class avrora.sim.util.MemoryProfiler
Mica2 - class avrora.sim.platform.Mica2.
  The `Mica2` class is an implementation of the `Platform` interface that represents both a specific microcontroller and the devices connected to it.
Mica2.Factory - class avrora.sim.platform.Mica2.Factory.
Mica2.Factory() - Constructor for class avrora.sim.platform.Mica2.Factory
Microcontroller - interface avrora.sim.mcu.Microcontroller.
  The `Microcontroller` interface corresponds to a hardware device that implements the AVR instruction set.
Microcontroller.InputPin - class avrora.sim.mcu.Microcontroller.InputPin.
Microcontroller.InputPin() - Constructor for class avrora.sim.mcu.Microcontroller.InputPin
Microcontroller.OutputPin - class avrora.sim.mcu.Microcontroller.OutputPin.
Microcontroller.OutputPin() - Constructor for class avrora.sim.mcu.Microcontroller.OutputPin
Microcontroller.Pin - interface avrora.sim.mcu.Microcontroller.Pin.
  The `Pin` interface encapsulates the notion of a physical pin on the microcontroller chip.
Microcontroller.Pin.Input - interface avrora.sim.mcu.Microcontroller.Pin.Input.
  The `Input` interface represents an input pin.
Microcontroller.Pin.Output - interface avrora.sim.mcu.Microcontroller.Pin.Output.
  The `Output` interface represents an output pin.
MicrocontrollerFactory - interface avrora.sim.mcu.MicrocontrollerFactory.
  The `MicrocontrollerFactory` interface is implemented by a class that is capable of making repeated copies of a particular microcontroller for use in simulation.
MicrocontrollerProperties - class avrora.sim.mcu.MicrocontrollerProperties.
  The `MicrocontrollerProperties` class is simply a wrapper class around several properties of a microcontroller including the size of the IO registers, the size of SRAM, flash, and EEPROM, as well as the mapping between names of pins and their physical pin number.
MicrocontrollerProperties(int, int, int, int, int, int, CodeSegment.Factory, HashMap, RegisterLayout, HashMap) - Constructor for class avrora.sim.mcu.MicrocontrollerProperties
  The constructor for the `MicrocontrollerProperties` class creates a new instance with the specified register size, flash size, etc.
MinMaxMean - class avrora.util.profiling.MinMaxMean.
  This models the min, max, mean, accumulation, total, and number of occurrences of min and max in a stream of integers.
MinMaxMean(String) - Constructor for class avrora.util.profiling.MinMaxMean
  Public constructor initializes the statistics for a sequence of integers.
MinMaxMean(String, String, String) - Constructor for class avrora.util.profiling.MinMaxMean
  Public constructor initializes the statistics for a sequence of integers.
Module() - Method in class avrora.syntax.AbstractParser
  The `Module()` method causes the parser to begin parsing the module.
Module - class avrora.syntax.Module.
  The `Module` class collects together the instructions and data into an AVR assembly program.
Module(boolean, boolean) - Constructor for class avrora.syntax.Module
Module() - Method in class avrora.syntax.atmel.AtmelParser
Module() - Method in class avrora.syntax.gas.GASParser
Module() - Method in class avrora.syntax.objdump.ObjDumpParser
Module.Seg - class avrora.syntax.Module.Seg.
Monitor - interface avrora.monitors.Monitor.
  The `Monitor` class represents a monitor attached to a `Simulator` instance.
MonitorFactory - class avrora.monitors.MonitorFactory.
  The `MonitorFactory` class represents a profiling utility that is able to produce a `Monitor` for a simulation.
MonitorFactory(String) - Constructor for class avrora.monitors.MonitorFactory
  The constructor for the `MonitorFactory` class initializes the `options` field, as well as the references to the help string and the short name of the monitor.
MonitorPanel - class avrora.gui.MonitorPanel.
  The `MonitorPanel` represents a pair of panels for a monitor, where one panel is the display panel (selectable through the main tab) and one is the options panel which is displayed when the user accesses the options for this monitor.
MulExpr() - Method in class avrora.syntax.atmel.AtmelParser
MulExpr() - Method in class avrora.syntax.gas.GASParser
Mul_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
MulticastExceptionWatch - class avrora.sim.util.MulticastExceptionWatch.
  An `ExceptionWatch` implementation which rebroadcasts the events to multiple `ExceptionWatch` instances.
MulticastExceptionWatch() - Constructor for class avrora.sim.util.MulticastExceptionWatch
MulticastFSMProbe - class avrora.sim.util.MulticastFSMProbe.
  The `MulticastProbe` is a wrapper around multiple probes that allows them to act as a single probe.
MulticastFSMProbe() - Constructor for class avrora.sim.util.MulticastFSMProbe
MulticastIORWatch - class avrora.sim.util.MulticastIORWatch.
  The `MulticastIORWatch` is a wrapper around multiple watches that allows them to act as a single watch.
MulticastIORWatch() - Constructor for class avrora.sim.util.MulticastIORWatch
MulticastInterruptProbe - class avrora.sim.util.MulticastInterruptProbe.
  The `MulticastInterruptProbe` is a wrapper around multiple probes that allows them to act as a single probe.
MulticastInterruptProbe() - Constructor for class avrora.sim.util.MulticastInterruptProbe
MulticastProbe - class avrora.sim.util.MulticastProbe.
  The `MulticastProbe` is a wrapper around multiple probes that allows them to act as a single probe.
MulticastProbe() - Constructor for class avrora.sim.util.MulticastProbe
MulticastWatch - class avrora.sim.util.MulticastWatch.
  The `MulticastProbe` is a wrapper around multiple watches that allows them to act as a single watch.
MulticastWatch() - Constructor for class avrora.sim.util.MulticastWatch
MutableState - class avrora.stack.MutableState.
  The `MutableState` class represents an abstract state of the processor that is mutable.
MutableState() - Constructor for class avrora.stack.MutableState
  The constructor of the `MutableState` class builds the default values of each of the registers and each IO register that is being modelled.
MutableState(int, char, char, char, char[]) - Constructor for class avrora.stack.MutableState
main(String[]) - Static method in class avrora.Main
  The `main()` method is the entrypoint into Avrora.
mainClock - Variable in class avrora.sim.clock.ClockDomain
mainClock - Variable in class avrora.sim.mcu.AtmelInternalDevice
mainClock - Variable in class avrora.sim.mcu.AtmelMicrocontroller
mainClockSpeed - Variable in class avrora.sim.platform.DefaultPlatform.Factory
major - Variable in class avrora.Version
  The `major` field stores the string that represents the major version number (the release number).
makeParagraphs(String, int, int, int) - Static method in class avrora.util.StringUtil
map - Variable in class avrora.util.help.ClassMapValueItem
mapMap - Variable in class avrora.core.isdl.gen.InterpreterGenerator
mapname - Variable in class avrora.core.isdl.ast.MapAssignStmt
  The `typename` field stores a reference to the name of the map whose element is being assigned to.
mapname - Variable in class avrora.core.isdl.ast.MapBitAssignStmt
  The `typename` field stores a reference to the name of the map whose element is being assigned to.
mapname - Variable in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `typename` field stores a reference to the name of the map whose element is being assigned to.
mapname - Variable in class avrora.core.isdl.ast.MapExpr
  The `typename` field stores a reference to the name of the map whose element is being accessed.
mapname - Variable in class avrora.core.isdl.dep.StateUse.MapUse
mapping - Variable in class avrora.sim.mcu.ATMegaFamily.FlagRegister
  The `mapping` array maps a bit number (0-7) to an interrupt number (0-35).
mapping - Variable in class avrora.sim.mcu.ATMegaFamily.MaskRegister
  The `mapping` array maps a bit number (0-7) to an interrupt number (0-35).
mark - Variable in class avrora.stack.StateCache.State
  The `mark` field is used by graph traversal algorithms to detect cycles and terminate traversals.
maskOf(char) - Static method in class avrora.stack.AbstractArithmetic
  The `maskOf()` method returns the upper 8 bits of the abstract (the mask bits) of the abstract value.
masterFrame - Variable in class avrora.gui.AvroraGui
  This is GUI - everything fits inside the master frame
masterPanel - Static variable in class avrora.gui.VisualRadioMonitor
match(Throwable) - Method in class avrora.test.TestCase.ExpectCompilationError
match(Throwable) - Method in class avrora.test.TestCase.Malformed
match(Throwable) - Method in class avrora.test.TestCase
match() - Method in class avrora.test.probes.ProbeTest
max() - Method in class avrora.util.profiling.Measurements
max() - Method in class avrora.util.profiling.TimedMeasurements
maxNextCharInd - Variable in class avrora.core.isdl.parser.SimpleCharStream
maxNextCharInd - Variable in class avrora.syntax.atmel.SimpleCharStream
maxNextCharInd - Variable in class avrora.syntax.gas.SimpleCharStream
maxNextCharInd - Variable in class avrora.syntax.objdump.SimpleCharStream
maxNextCharInd - Variable in class avrora.test.probes.SimpleCharStream
maxvalue - Variable in class avrora.gui.GraphNumbers
  The max value of the y-axis
maxvalueVisual - Variable in class avrora.gui.GraphNumbers
  The visual wdiget that sets the max value for the y-axis
mcf - Variable in class avrora.sim.platform.DefaultPlatform.Factory
mcu - Variable in class avrora.sim.platform.ExternalFlash
mcu - Variable in class avrora.sim.platform.PinConnect.PinNode
mcu - Variable in class avrora.sim.platform.Platform
mcu - Variable in class avrora.sim.platform.sensors.LightSensor
mcu - Variable in class avrora.sim.radio.CC1000Radio
  Connected Microcontroller, Simulator and SimulatorThread should all correspond.
mean - Variable in class avrora.util.profiling.MinMaxMean
median - Variable in class avrora.util.profiling.Distribution
  The `median` field stores the median value of the distribution.
meet_count - Variable in class avrora.sim.clock.IntervalSynchronizer
members - Variable in class avrora.core.isdl.OperandDecl.RegisterSet
memory - Variable in class avrora.sim.platform.ExternalFlash
memory(byte) - Method in class avrora.sim.platform.LCDScreen
  The `memory()` method returns the character in memory at the given location.
memprofile - Variable in class avrora.monitors.MemoryMonitor.Monitor
memstart - Variable in class avrora.monitors.MemoryMonitor.Monitor
menuBar - Variable in class avrora.gui.SimMenuBar
  This is the high level menu "object" that should be displayed
merge(byte, byte) - Static method in class avrora.stack.AbstractArithmetic
  The `merge()` method merges abstract values.
merge(char, byte) - Static method in class avrora.stack.AbstractArithmetic
  The `merge()` method merges abstract values.
merge(byte, byte, byte) - Static method in class avrora.stack.AbstractArithmetic
  The `merge()` method merges abstract values.
merge(byte, byte, byte, byte) - Static method in class avrora.stack.AbstractArithmetic
  The `merge()` method merges abstract values.
merge(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `merge()` method merges abstract values.
merge(MutableState) - Method in class avrora.stack.MutableState
  The `merge()` method merges this abstract state with another abstract state and returns a new copy.
merge(ISEAbstractState) - Method in class avrora.stack.isea.ISEAbstractState
merge(byte, byte) - Static method in class avrora.stack.isea.ISEValue
merge(MinMaxMean) - Method in class avrora.util.profiling.Distribution
  Merge this statistical information with another.
merge(MinMaxMean) - Method in class avrora.util.profiling.MinMaxMean
  Merge the results of two MinMaxMean objects into one.
mergeMask(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `mergeMask()` merges the given abstract value with the known bit mask passed.
mergeWithCaller(ISEState) - Method in class avrora.stack.isea.ISEState
message - Variable in class avrora.Avrora.Error
message - Variable in class avrora.test.TestResult.TestFailure
met - Variable in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
method - Variable in class avrora.core.isdl.ast.CallExpr
  The `method` field stores a string that represents the name of the subroutine being called.
method - Variable in class avrora.core.isdl.ast.CallStmt
  The `method` field stores a string that represents the name of the subroutine being called.
microcontroller - Variable in class avrora.monitors.MemoryMonitor.Monitor
microcontroller - Variable in class avrora.sim.Simulator
  The `microcontroller` field stores a reference to the microcontroller being simulated.
microcontroller - Variable in class avrora.sim.mcu.AtmelInternalDevice
milliToSecs(long) - Static method in class avrora.util.StringUtil
millisToCycles(double) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `millisToCycles()` method converts the specified number of milliseconds to a cycle count.
millisToCycles(double) - Method in interface avrora.sim.mcu.Microcontroller
  The `millisToCycles()` method converts the specified number of milliseconds to a cycle count.
millisToDays(long) - Static method in class avrora.util.StringUtil
  The `millisToDays()` method converts the given milliseconds into a breakdown of days, hours, minutes, seconds, and milliseconds, returning a long array where the expr 0 corresponds to days, expr 1 corresponds to hours, etc.
min() - Method in class avrora.util.profiling.Measurements
min() - Method in class avrora.util.profiling.TimedMeasurements
modeAmpere - Static variable in class avrora.sim.radio.RadioEnergy
  `modeAmpere` power consumption of the operating modes
modeName - Static variable in class avrora.sim.radio.RadioEnergy
  `modeName` names of the operating modes
module - Variable in class avrora.syntax.AbstractParser
  The `module` field stores a reference to the module that this parser is building.
module - Variable in class avrora.syntax.Item
modulus(long, int[]) - Static method in class avrora.util.Arithmetic
monitorFactoryList - Variable in class avrora.sim.Simulation
monitorListMap - Variable in class avrora.actions.SimAction
monitorResults - Variable in class avrora.gui.AvroraGui
  This holds all our monitor "chalkboards" for displaying the data they collect
monitors - Variable in class avrora.sim.Simulation.Node
mult(long[], int[]) - Static method in class avrora.util.Arithmetic

## N

N - Variable in class avrora.sim.BaseInterpreter
NEG - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
NEG - Static variable in interface avrora.syntax.gas.GASParserConstants
NEG - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
NODE - Variable in class avrora.monitors.SerialMonitor
NODECOUNT - Variable in class avrora.sim.types.SensorSimulation
NODE_HZ - Static variable in interface avrora.sim.radio.Radio
NOLIST - Static variable in interface avrora.syntax.gas.GASParserConstants
NOP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
NOP - Static variable in interface avrora.syntax.gas.GASParserConstants
NOP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
NORMAL_EDGE - Static variable in class avrora.stack.Analyzer
NORMAL_STATE - Static variable in class avrora.stack.Analyzer
NOT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
NOTEQUAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
NO_INSTR - Variable in class avrora.sim.CodeSegment
NUM_REGISTERS - Static variable in class avrora.stack.isea.ISEState
NUM_REGS - Static variable in class avrora.sim.BaseInterpreter
NUM_REGS - Static variable in interface avrora.stack.IORegisterConstants
NewFormat(Token, Token) - Method in class avrora.core.isdl.parser.ISDLParser
NoListDirective() - Method in class avrora.syntax.atmel.AtmelParser
NoListDirective() - Method in class avrora.syntax.gas.GASParser
name - Variable in class avrora.core.InstrProperties
  The `name` field stores an immutable reference to the name of the instruction as a string.
name - Variable in class avrora.core.Program.Location
  The `name` field records the name of this label.
name - Variable in class avrora.core.SourceMapping.Location
  The `name` field records the name of this label.
name - Variable in class avrora.core.isdl.Architecture
name - Variable in class avrora.core.isdl.CodeRegion.Operand
name - Variable in class avrora.core.isdl.EncodingDecl.Cond
name - Variable in class avrora.core.isdl.EncodingDecl.Substitution
name - Variable in class avrora.core.isdl.EncodingDecl
name - Variable in class avrora.core.isdl.InstrDecl
  The `name` field stores a string representing the name of the instruction.
name - Variable in class avrora.core.isdl.OperandDecl.RegisterEncoding
name - Variable in class avrora.core.isdl.OperandDecl
name - Variable in class avrora.core.isdl.SubroutineDecl
name - Variable in class avrora.core.isdl.ast.DeclStmt
  The `name` field stores a reference to the name of the local.
name - Variable in class avrora.sim.Segment
name - Variable in class avrora.sim.clock.Clock
  The `name` field stores the name of this clock as a string.
name - Variable in class avrora.sim.mcu.AtmelInternalDevice
name - Variable in class avrora.stack.isea.ISEAbstractState.Element
name - Variable in class avrora.syntax.Item.Instruction
name - Variable in class avrora.syntax.SyntacticOperand.Register
name - Variable in class avrora.util.Option
  The `name` field stores a reference to the string name of this option.
name - Variable in class avrora.util.help.HelpCategory
name - Variable in class avrora.util.profiling.DataItem
names - Static variable in class avrora.sim.platform.sensors.LightSensor
nesting - Variable in class avrora.sim.util.SequenceProbe
  The `nesting` field stores the current nesting level (i.e. the number of times `entry_addr` has been reached without `exit_addr` intervening).
nesting - Variable in class avrora.sim.util.TransactionalList
newBlock(int) - Method in class avrora.core.ControlFlowGraph
  The `newBlock()` method creates a new block within the control flow graph, starting at the specified address.
newClock(String, long) - Method in class avrora.sim.clock.ClockDomain
  The `newClock()` method creates a new clock derived from the main clock of this clock domain with the given name and clockspeed.
newCodeSegment(String, BaseInterpreter, Segment.ErrorReporter, Program) - Method in class avrora.sim.CodeSegment.DefaultFactory
newCodeSegment(String, BaseInterpreter, Segment.ErrorReporter, Program) - Method in interface avrora.sim.CodeSegment.Factory
newCodeSegment(String, BaseInterpreter, Segment.ErrorReporter, Program) - Method in class avrora.sim.mcu.ReprogrammableCodeSegment.Factory
newDataLabel(String, int) - Method in class avrora.core.Program
  The `newDataLabel()` method creates a label in the data segment with the specified name at the specified byte address.
newEEPromLabel(String, int) - Method in class avrora.core.Program
  The `newEEPromLabel()` method creates a label in the eeprom segment with the specified name at the specified byte address.
newEdgeCount - Variable in class avrora.stack.Analyzer
newEdges - Variable in class avrora.stack.Analyzer
newEvent(Token, List) - Method in class avrora.test.probes.ProbeTest
newFrame(byte) - Static method in class avrora.sim.mcu.SPI
newInterpreter(Simulator, Program, MicrocontrollerProperties) - Method in class avrora.sim.GenInterpreter.Factory
newInterpreter(Simulator, Program, MicrocontrollerProperties) - Method in class avrora.sim.InterpreterFactory
  The `newInterpreter()` method creates a new interpreter given the simulator, the program, and the properties of the microcontroller.
newInterpreter(Simulator, Program, MicrocontrollerProperties) - Method in class avrora.sim.dbbc.DBBCInterpreter.Factory
newLocation(String, int) - Method in class avrora.core.LabelMapping
  The `newLocatiobn()` method creates a new program location with the specified label name that is stored internally.
newMicrocontroller(int, ClockDomain, InterpreterFactory, Program) - Method in class avrora.sim.mcu.ATMega128.Factory
  The `newMicrocontroller()` method is used to instantiate a microcontroller instance for the particular program.
newMicrocontroller(int, ClockDomain, InterpreterFactory, Program) - Method in class avrora.sim.mcu.ATMega16.Factory
  The `newMicrocontroller()` method is used to instantiate a microcontroller instance for the particular program.
newMicrocontroller(int, ClockDomain, InterpreterFactory, Program) - Method in class avrora.sim.mcu.ATMega32.Factory
  The `newMicrocontroller()` method is used to instantiate a microcontroller instance for the particular program.
newMicrocontroller(int, ClockDomain, InterpreterFactory, Program) - Method in interface avrora.sim.mcu.MicrocontrollerFactory
  The `newMicrocontroller()` method is used to instantiate a microcontroller instance for the particular program.
newMonitor(Simulator) - Method in class avrora.gui.VisualRadioMonitor
  The `newMonitor()` method creates a new monitor that is capable of monitoring the stack height of the program over its execution.
newMonitor(Simulator) - Method in class avrora.gui.VisualRegMonitor
  The `newMonitor()` method creates a new monitor that is capable of monitoring the stack height of the program over its execution.
newMonitor(Simulator) - Method in class avrora.monitors.CallMonitor
  The `newMonitor()` method simply creates a new call monitor for each simulator.
newMonitor(Simulator) - Method in class avrora.monitors.EnergyMonitor
  create a new monitor, calls the constructor
newMonitor(Simulator) - Method in class avrora.monitors.EnergyMonitorLog
  create a new monitor, calls the constructor
newMonitor(Simulator) - Method in class avrora.monitors.EnergyProfiler
  The `newMonitor()` method creates a new monitor that is capable of energy profiling.
newMonitor(Simulator) - Method in class avrora.monitors.GDBServer
  The `newMonitor()` method creates a new monitor for the given simulator.
newMonitor(Simulator) - Method in class avrora.monitors.IORegMonitor
newMonitor(Simulator) - Method in class avrora.monitors.InteractiveMonitor
  The `newMonitor()` method simply creates a new call monitor for each simulator.
newMonitor(Simulator) - Method in class avrora.monitors.InterruptMonitor
  The `newMonitor()` method creates a new interrupt monitor for the specified simulator that will collect statistics about the interrupts executed during simulation.
newMonitor(Simulator) - Method in class avrora.monitors.MemoryMonitor
newMonitor(Simulator) - Method in class avrora.monitors.MonitorFactory
  The `newMonitor()` method creates a new monitor for the specified instance of `Simulator`.
newMonitor(Simulator) - Method in class avrora.monitors.PacketMonitor
  create a new monitor, calls the constructor
newMonitor(Simulator) - Method in class avrora.monitors.ProfileMonitor
newMonitor(Simulator) - Method in class avrora.monitors.RealTimeMonitor
newMonitor(Simulator) - Method in class avrora.monitors.SerialMonitor
  The `newMonitor()` method creates a new monitor that is capable of setting up a virtual usart connection to the pc.
newMonitor(Simulator) - Method in class avrora.monitors.SimPerfMonitor
  The `newMonitor()` method creates a new monitor for the given simulator that is capable of collecting performance information as the program executes.
newMonitor(Simulator) - Method in class avrora.monitors.SleepMonitor
newMonitor(Simulator) - Method in class avrora.monitors.StackMonitor
  The `newMonitor()` method creates a new monitor that is capable of monitoring the stack height of the program over its execution.
newMonitor(Simulator) - Method in class avrora.monitors.TraceMonitor
  The `newMonitor()` method creates a new monitor for the given simulator that is capable of collecting performance information as the program executes.
newMonitor(Simulator) - Method in class avrora.monitors.TripTimeMonitor
newNode(int, PlatformFactory, LoadableProgram) - Method in class avrora.sim.Simulation
  The `newNode()` method is intended to be overridden by subclasses of Simulation.
newNode(int, PlatformFactory, LoadableProgram) - Method in class avrora.sim.types.SensorSimulation
  The `newNode()` method creates a new node in the simulation.
newOperand(Expr) - Method in class avrora.syntax.Module
newOperand(AbstractToken) - Method in class avrora.syntax.Module
newOption(String, boolean, String) - Method in class avrora.actions.Action
  The `newOption()` is used by subclasses to easily create new options for this action.
newOption(String, long, String) - Method in class avrora.actions.Action
  The `newOption()` is used by subclasses to easily create new options for this action.
newOption(String, double, String) - Method in class avrora.actions.Action
  The `newOption()` is used by subclasses to easily create new options for this action.
newOption(String, long, long, String) - Method in class avrora.actions.Action
  The `newOption()` is used by subclasses to easily create new options for this action.
newOption(String, String, String) - Method in class avrora.actions.Action
  The `newOption()` is used by subclasses to easily create new options for this action.
newOption(String, boolean, String) - Method in class avrora.util.Options
newOption(String, String, String) - Method in class avrora.util.Options
newOption(String, long, String) - Method in class avrora.util.Options
newOption(String, double, String) - Method in class avrora.util.Options
newOption(String, long, long, String) - Method in class avrora.util.Options
newOptionList(String, String, String) - Method in class avrora.actions.Action
  The `newOptionList()` is used by subclasses to easily create new options for this action.
newOptionList(String, String, String) - Method in class avrora.util.Options
newPanel(Simulation.Node, MonitorPanel) - Method in class avrora.gui.SingleNodeMonitor
newPanel(Simulation.Node, MonitorPanel) - Method in class avrora.gui.VisualStackMonitor
newPlatform(int, InterpreterFactory, Program) - Method in class avrora.sim.platform.DefaultPlatform.Factory
  The `newPlatform()` method creates a new instance of the platform with the specified ID number, using the interpreter created by the given interpreter factory, containing the specified progarm.
newPlatform(int, InterpreterFactory, Program) - Method in class avrora.sim.platform.Mica2.Factory
  The `newPlatform()` method is a factory method used to create new instances of the `Mica2` class.
newPlatform(int, InterpreterFactory, Program) - Method in interface avrora.sim.platform.PlatformFactory
  The `newPlatform()` method creates a new instance of the platform with the specified ID number, using the interpreter created by the given interpreter factory, containing the specified progarm.
newPlatform(int, InterpreterFactory, Program) - Method in class avrora.sim.platform.Seres.Factory
newProbe(Token, List, List) - Method in class avrora.test.probes.ProbeTest
newProgramLabel(String, int) - Method in class avrora.core.Program
  The `newProgramLabel()` method creates a label in the program segment with the specified name at the specified byte address.
newRetCount - Variable in class avrora.stack.Analyzer
newReturnStates - Variable in class avrora.stack.Analyzer
newSection(AbstractToken, AbstractToken, AbstractToken) - Method in class avrora.syntax.objdump.RawModule
newSet() - Method in class avrora.stack.StateCache
newSet() - Method in class avrora.stack.StateTransitionGraph
newSimulator(int, Program) - Static method in class avrora.Defaults
newSimulator(int, String, long, long, InterpreterFactory, Program) - Static method in class avrora.Defaults
newState - Variable in class avrora.sim.FiniteStateMachine.TransitionEvent
newTTM(int) - Static method in class avrora.sim.FiniteStateMachine
  The `newTTM()` method is a utility function for building a new transition time matrix.
newTemp(String) - Method in class avrora.core.isdl.gen.Inliner
newTemp() - Method in class avrora.sim.dbbc.DBBC.CodeGenerator
newTestCase(String, Properties) - Method in class avrora.test.DisassemblerTestHarness
newTestCase(String, Properties) - Method in class avrora.test.InterruptTestHarness
newTestCase(String, Properties) - Method in class avrora.test.ProbeTestHarness
newTestCase(String, Properties) - Method in class avrora.test.SimplifierTestHarness
newTestCase(String, Properties) - Method in class avrora.test.SimulatorTestHarness
newTestCase(String, Properties) - Method in interface avrora.test.TestHarness
  The `newTestCase()` method creates a new test case of the right type given the file name and the properties already extracted from the file by the testing framework.
newToken(String) - Method in class avrora.core.isdl.gen.Inliner
newToken(int) - Static method in class avrora.core.isdl.parser.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class avrora.syntax.atmel.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class avrora.syntax.gas.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class avrora.syntax.objdump.Token
  Returns a new Token object, by default.
newToken(int) - Static method in class avrora.test.probes.Token
  Returns a new Token object, by default.
newWatch(Token, List, List, List, List) - Method in class avrora.test.probes.ProbeTest
newprogram - Variable in class avrora.syntax.Module
next - Variable in class avrora.core.isdl.parser.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class avrora.sim.util.TransactionalList.Link
next - Variable in class avrora.stack.StateTransitionGraph.EdgeList
next - Variable in class avrora.stack.StateTransitionGraph.StateList
next - Variable in class avrora.syntax.ExprList.ExprItem
next - Variable in class avrora.syntax.atmel.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class avrora.syntax.gas.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class avrora.syntax.objdump.Token
  A reference to the next regular (non-special) token from the input stream.
next - Variable in class avrora.test.probes.Token
  A reference to the next regular (non-special) token from the input stream.
next() - Method in class avrora.util.profiling.Measurements.Iterator
next(TimedMeasurements.Measurement) - Method in class avrora.util.profiling.TimedMeasurements.Iterator
nextInstance() - Static method in class avrora.sim.energy.EnergyControl
nextPC - Variable in class avrora.sim.BaseInterpreter
  The `nextPC` field is used internally in maintaining the correct execution order of the instructions.
nextPC - Variable in class avrora.stack.isea.ISEInterpreter
nextRegister() - Method in class avrora.core.Register
  The `nextRegister()` method returns a reference to the register that immediately follows this register in the register file.
nextln() - Method in class avrora.stack.isea.ISEAbstractState
nextln() - Method in class avrora.util.Printer
nextln() - Static method in class avrora.util.Terminal
nextln() - Method in class avrora.util.Verbose.Printer
node - Variable in class avrora.gui.SingleNodeMonitor.SingleNodePanel
node - Variable in class avrora.sim.SimulatorThread
node - Variable in class avrora.sim.types.SingleSimulation.SingleSynchronizer
nodeName - Variable in class avrora.sim.radio.freespace.Position
nodes - Variable in class avrora.sim.Simulation
northPinInt - Variable in class avrora.sim.platform.PinConnect.PinNode
northPinRx - Variable in class avrora.sim.platform.PinConnect.PinNode
northPinTx - Variable in class avrora.sim.platform.PinConnect.PinNode
not(char) - Static method in class avrora.stack.AbstractArithmetic
  The `not()` method computes the bitwise negation (one's complement) of the specified abstract value
notify - Variable in class avrora.sim.InterruptTable
nottakenCount - Variable in class avrora.sim.util.BranchCounter
  This field tracks the number of times the branch is not taken.
num - Variable in class avrora.syntax.Expr.RelativeAddress
numInterrupts - Variable in class avrora.sim.InterruptTable
numOperands() - Method in class avrora.core.isdl.CodeRegion
numStates - Variable in class avrora.sim.FiniteStateMachine
numThreads - Variable in class avrora.sim.clock.StepSynchronizer
num_interrupts - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `num_interrupts` field stores the number of interrupts supported on this microcontroller.
num_nodes - Variable in class avrora.sim.Simulation
num_pins - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `num_pins` field stores the number of physical pins on this microcontroller.
number - Variable in class avrora.core.Instr.InvalidOperand
  The `number` field of the `InvalidOperand` instance records which operand this error refers to.
number - Variable in class avrora.sim.mcu.AtmelMicrocontroller.Pin
numofnodes - Static variable in class avrora.gui.VisualRadioMonitor

## O

OCDR - Static variable in interface avrora.stack.IORegisterConstants
OCR0 - Static variable in interface avrora.stack.IORegisterConstants
OCR1AH - Static variable in interface avrora.stack.IORegisterConstants
OCR1AL - Static variable in interface avrora.stack.IORegisterConstants
OCR1BH - Static variable in interface avrora.stack.IORegisterConstants
OCR1BL - Static variable in interface avrora.stack.IORegisterConstants
OCR1CH - Static variable in interface avrora.stack.IORegisterConstants
OCR1CL - Static variable in interface avrora.stack.IORegisterConstants
OCR2 - Static variable in interface avrora.stack.IORegisterConstants
OCR3AH - Static variable in interface avrora.stack.IORegisterConstants
OCR3AL - Static variable in interface avrora.stack.IORegisterConstants
OCR3BH - Static variable in interface avrora.stack.IORegisterConstants
OCR3BL - Static variable in interface avrora.stack.IORegisterConstants
OCR3CH - Static variable in interface avrora.stack.IORegisterConstants
OCR3CL - Static variable in interface avrora.stack.IORegisterConstants
OCTAL_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
OCTAL_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
OCTAL_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
OCTAL_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
OCTAL_LITERAL - Static variable in interface avrora.test.probes.ProbeParserConstants
ODPPAction - class avrora.syntax.objdump.ODPPAction.
  The `ObjDumpPreprocessor` class is a utility class that takes the output from the `avr-objdump` utility and produces a cleaned up version that is more suitable for parsing into the internal format of Avrora.
ODPPAction() - Constructor for class avrora.syntax.objdump.ODPPAction
ODPPAction(Option.List) - Constructor for class avrora.syntax.objdump.ODPPAction
OFFSET - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ONE - Static variable in class avrora.core.isdl.gen.ConstantPropagator
OPERAND - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
OR - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
OR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
OR - Static variable in interface avrora.syntax.gas.GASParserConstants
OR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ORG - Static variable in interface avrora.syntax.gas.GASParserConstants
ORI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ORI - Static variable in interface avrora.syntax.gas.GASParserConstants
ORI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
OSCCAL - Static variable in interface avrora.stack.IORegisterConstants
OUT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
OUT - Static variable in interface avrora.syntax.gas.GASParserConstants
OUT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
OUTPUT - Variable in class avrora.actions.CFGAction
ObjDump2ProgramReader - class avrora.syntax.objdump.ObjDump2ProgramReader.
  The `ObjdumpProgramReader` is an implementation of the `ProgramReader` that reads source assembly files in the Atmel style syntax.
ObjDump2ProgramReader() - Constructor for class avrora.syntax.objdump.ObjDump2ProgramReader
ObjDumpParser - class avrora.syntax.objdump.ObjDumpParser.
ObjDumpParser(InputStream, RawModule, String) - Constructor for class avrora.syntax.objdump.ObjDumpParser
ObjDumpParser(Reader, RawModule, String) - Constructor for class avrora.syntax.objdump.ObjDumpParser
ObjDumpParser(InputStream) - Constructor for class avrora.syntax.objdump.ObjDumpParser
ObjDumpParser(Reader) - Constructor for class avrora.syntax.objdump.ObjDumpParser
ObjDumpParser(ObjDumpParserTokenManager) - Constructor for class avrora.syntax.objdump.ObjDumpParser
ObjDumpParserConstants - interface avrora.syntax.objdump.ObjDumpParserConstants.
ObjDumpParserTokenManager - class avrora.syntax.objdump.ObjDumpParserTokenManager.
ObjDumpParserTokenManager(SimpleCharStream) - Constructor for class avrora.syntax.objdump.ObjDumpParserTokenManager
ObjDumpParserTokenManager(SimpleCharStream, int) - Constructor for class avrora.syntax.objdump.ObjDumpParserTokenManager
ObjDumpProgramReader - class avrora.syntax.objdump.ObjDumpProgramReader.
  The `ObjdumpProgramReader` is an implementation of the `ProgramReader` that reads source assembly files in the Atmel style syntax.
ObjDumpProgramReader() - Constructor for class avrora.syntax.objdump.ObjDumpProgramReader
ObjDumpReformatter - class avrora.syntax.objdump.ObjDumpReformatter.
ObjDumpReformatter(List) - Constructor for class avrora.syntax.objdump.ObjDumpReformatter
OpcodeGPR() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeGPR() - Method in class avrora.syntax.gas.GASParser
OpcodeGPR() - Method in class avrora.syntax.objdump.ObjDumpParser
OpcodeGPRGPR() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeGPRGPR() - Method in class avrora.syntax.gas.GASParser
OpcodeGPRGPR() - Method in class avrora.syntax.objdump.ObjDumpParser
OpcodeGPRIMM() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeGPRIMM() - Method in class avrora.syntax.gas.GASParser
OpcodeGPRIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
OpcodeIMM() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeIMM() - Method in class avrora.syntax.gas.GASParser
OpcodeIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
OpcodeIMMIMM() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeIMMIMM() - Method in class avrora.syntax.gas.GASParser
OpcodeIMMIMM() - Method in class avrora.syntax.objdump.ObjDumpParser
OpcodeLPM() - Method in class avrora.syntax.atmel.AtmelParser
OpcodeLPM() - Method in class avrora.syntax.gas.GASParser
OpcodeLPM() - Method in class avrora.syntax.objdump.ObjDumpParser
Operand - interface avrora.core.Operand.
  The `Operand` class encapsulates the notion of an operand to an instruction.
Operand.Constant - interface avrora.core.Operand.Constant.
  The `Operand.Constant` class encapsulates the notion of a constant operand to an instruction.
Operand.Register - interface avrora.core.Operand.Register.
  The `Operand.Register` class encapsulates the notion of a register operand to an instruction.
OperandDecl - class avrora.core.isdl.OperandDecl.
  The `OperandDecl` class represents the declaration of a set of values (or registers) that can serve as an operand to a particular instruction.
OperandDecl(Token, Token, Token) - Constructor for class avrora.core.isdl.OperandDecl
OperandDecl(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
OperandDecl.Immediate - class avrora.core.isdl.OperandDecl.Immediate.
OperandDecl.Immediate(Token, Token, Token, Token, Token) - Constructor for class avrora.core.isdl.OperandDecl.Immediate
OperandDecl.RegisterEncoding - class avrora.core.isdl.OperandDecl.RegisterEncoding.
OperandDecl.RegisterEncoding(Token, Token) - Constructor for class avrora.core.isdl.OperandDecl.RegisterEncoding
OperandDecl.RegisterSet - class avrora.core.isdl.OperandDecl.RegisterSet.
OperandDecl.RegisterSet(Token, Token, Token, List) - Constructor for class avrora.core.isdl.OperandDecl.RegisterSet
OperandRangeDecl(Token, Token, Token) - Method in class avrora.core.isdl.parser.ISDLParser
OperandSet() - Method in class avrora.core.isdl.parser.ISDLParser
OperandSetDecl(Token, Token, Token) - Method in class avrora.core.isdl.parser.ISDLParser
OperandSetElem(List) - Method in class avrora.core.isdl.parser.ISDLParser
OperandTail(Architecture, Token, Token, Token) - Method in class avrora.core.isdl.parser.ISDLParser
Option - class avrora.util.Option.
  The `Option` class represents an option that has been given on the command line.
Option(String, String) - Constructor for class avrora.util.Option
  The constructor of the `Option` class creates a new option with the specified name and description.
Option.Bool - class avrora.util.Option.Bool.
  The `Option.Bool` class is an implementation of the `Option` class that encapsulates a boolean.
Option.Bool(String, boolean, String) - Constructor for class avrora.util.Option.Bool
  The constructor for the `Option.Long` class creates a new option that can store a boolean value.
Option.Double - class avrora.util.Option.Double.
  The `Option.Double` class is an implementation of the `Option` class that encapsulates a double value.
Option.Double(String, double, String) - Constructor for class avrora.util.Option.Double
  The constructor for the `Option.Double` class creates a new option that can store long integers.
Option.Interval - class avrora.util.Option.Interval.
  The `Option.Long` class is an implementation of the `Option` class that encapsulates a long integer value.
Option.Interval(String, long, long, String) - Constructor for class avrora.util.Option.Interval
  The constructor for the `Option.Interval` class creates a new option that can store an interval which is denoted by a low integer and a high integer.
Option.List - class avrora.util.Option.List.
  The `Option.List` class is an implementation of the `Option` class that encapsulates a list.
Option.List(String, String, String) - Constructor for class avrora.util.Option.List
  The constructor for the `Option.List` class creates a new option that can store a list of strings.
Option.Long - class avrora.util.Option.Long.
  The `Option.Long` class is an implementation of the `Option` class that encapsulates a long integer value.
Option.Long(String, long, String) - Constructor for class avrora.util.Option.Long
  The constructor for the `Option.Long` class creates a new option that can store long integers.
Option.Str - class avrora.util.Option.Str.
  The `Option.Str` class is an implementation of the `Option` class that encapsulates a string.
Option.Str(String, String, String) - Constructor for class avrora.util.Option.Str
  The constructor for the `Option.Str` class creates a new option that can store a string.
Options - class avrora.util.Options.
  The `Options` class represents a collection of command line options and utility methods for parsing the command line.
Options() - Constructor for class avrora.util.Options
OrExpr() - Method in class avrora.syntax.atmel.AtmelParser
OrExpr() - Method in class avrora.syntax.gas.GASParser
Or_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
OrgDirective() - Method in class avrora.syntax.atmel.AtmelParser
OrgDirective() - Method in class avrora.syntax.gas.GASParser
objMap - Variable in class avrora.util.ClassMap
  The `objMap` field is a hash map that maps a string to an instance of a particular class, i.e. an object.
object - Variable in class avrora.sim.util.TransactionalList.Link
observedMaximum - Variable in class avrora.util.profiling.MinMaxMean
observedMinimum - Variable in class avrora.util.profiling.MinMaxMean
occupied(long, long) - Method in class avrora.sim.radio.Channel
  The `occupied()` method tests whether this channel has been written to in the window of time specified.
octalValueOf(char) - Static method in class avrora.util.StringUtil
oldState - Variable in class avrora.sim.FiniteStateMachine.TransitionEvent
oldState - Variable in class avrora.stack.AbstractInterpreter
on - Variable in class avrora.sim.platform.sensors.LightSensor
op - Variable in class avrora.syntax.Expr.BinOp
  The `op` field records the token that corresponds to the actual arithmetic operator.
op - Variable in class avrora.syntax.Expr.RelativeAddress
op - Variable in class avrora.syntax.Expr.UnOp
operand - Variable in class avrora.core.Instr.ImmediateRequired
operand - Variable in class avrora.core.Instr.RegisterRequired
operand - Variable in class avrora.core.isdl.ast.Arith.UnOp
  The `operand` field stores a reference to the expression operand of this operation.
operand - Variable in class avrora.core.isdl.ast.BitRangeExpr
  The `operand` field stores a reference to the expression that is the operand of the bit range expression, i.e. the value from which the range of bits will be extracted.
operand - Variable in class avrora.core.isdl.ast.Logical.UnOp
  The `operand` field stores a reference to the expression operand of this operation.
operand - Variable in class avrora.core.isdl.dep.StateUse.Index.Operand
operand - Variable in class avrora.core.isdl.dep.StateUse.Index.OperandPlusConstant
operand - Variable in class avrora.syntax.Expr.UnOp
operandType - Variable in class avrora.core.isdl.CodeRegion.Operand
operands - Variable in class avrora.core.isdl.CodeRegion
operands - Variable in class avrora.syntax.Item.Instruction
operation - Variable in class avrora.core.isdl.ast.Arith.BinOp
  The `operation` field stores the string name of the operation of this binary operation.
operation - Variable in class avrora.core.isdl.ast.Arith.UnOp
  The `operation` field stores the string name of the operation being performed on the expression.
operation - Variable in class avrora.core.isdl.ast.Logical.BinOp
  The `operation` field stores the string name of the operation of this binary operation.
operation - Variable in class avrora.core.isdl.ast.Logical.UnOp
  The `operation` field stores the string name of the operation being performed on the expression.
options - Variable in class avrora.actions.Action
  The `options` field stores a reference to an instance of the `Options` class that encapsulates the command line options available to this action.
options - Variable in class avrora.core.ProgramReader
  The `options` field stores a reference to an instance of the `Options` class that encapsulates the command line options available to this reader.
options - Variable in class avrora.monitors.MonitorFactory
  The `options` field stores a reference to an instance of the `Options` class that stores the command line options to the monitor.
options - Variable in class avrora.sim.Simulation
options - Variable in class avrora.sim.dbbc.DBBC
optionsPanel - Static variable in class avrora.gui.VisualRadioMonitor
optname - Variable in class avrora.util.help.ClassMapValueItem
optname - Variable in class avrora.util.help.ValueItem
optvalue - Variable in class avrora.util.help.ClassMapValueItem
optvalue - Variable in class avrora.util.help.ValueItem
or(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `or()` method computes the logical bitwise or of two abstract values.
or(char, char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `or()` method computes the logical bitwise or of three abstract values.
orig - Variable in class avrora.util.Option.List
originTime - Variable in class avrora.sim.radio.Radio.Transmission
outputReady() - Method in class avrora.sim.platform.PinWire
overflow() - Method in class avrora.sim.mcu.Timer16Bit
  Flags the overflow interrupt for this timer.
overflow() - Method in class avrora.sim.mcu.Timer8Bit

## P

PACKETS - Variable in class avrora.monitors.PacketMonitor
PAGE - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
PAGE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
PA_POW - Static variable in class avrora.sim.radio.CC1000Radio
PA_POW_reg - Variable in class avrora.sim.radio.CC1000Radio
PERIOD - Variable in class avrora.monitors.ProfileMonitor
PINA - Static variable in interface avrora.stack.IORegisterConstants
PINB - Static variable in interface avrora.stack.IORegisterConstants
PINC - Static variable in interface avrora.stack.IORegisterConstants
PIND - Static variable in interface avrora.stack.IORegisterConstants
PINE - Static variable in interface avrora.stack.IORegisterConstants
PINF - Static variable in interface avrora.stack.IORegisterConstants
PING - Static variable in interface avrora.stack.IORegisterConstants
PIPE - Static variable in interface avrora.test.probes.ProbeParserConstants
PLATFORM - Variable in class avrora.sim.Simulation
PLL - Static variable in class avrora.sim.radio.CC1000Radio
PLL_reg - Variable in class avrora.sim.radio.CC1000Radio
POP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
POP - Static variable in interface avrora.syntax.gas.GASParserConstants
POP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
POP_EDGE - Static variable in class avrora.stack.Analyzer
PORT - Variable in class avrora.monitors.SerialMonitor
PORTA - Static variable in interface avrora.stack.IORegisterConstants
PORTB - Static variable in interface avrora.stack.IORegisterConstants
PORTC - Static variable in interface avrora.stack.IORegisterConstants
PORTD - Static variable in interface avrora.stack.IORegisterConstants
PORTE - Static variable in interface avrora.stack.IORegisterConstants
PORTF - Static variable in interface avrora.stack.IORegisterConstants
PORTG - Static variable in interface avrora.stack.IORegisterConstants
PREAMBLE - Variable in class avrora.monitors.PacketMonitor
PREC_A_ADD - Static variable in class avrora.core.isdl.ast.Expr
PREC_A_AND - Static variable in class avrora.core.isdl.ast.Expr
PREC_A_MUL - Static variable in class avrora.core.isdl.ast.Expr
PREC_A_OR - Static variable in class avrora.core.isdl.ast.Expr
PREC_A_SHIFT - Static variable in class avrora.core.isdl.ast.Expr
PREC_A_XOR - Static variable in class avrora.core.isdl.ast.Expr
PREC_L_AND - Static variable in class avrora.core.isdl.ast.Expr
PREC_L_EQU - Static variable in class avrora.core.isdl.ast.Expr
PREC_L_OR - Static variable in class avrora.core.isdl.ast.Expr
PREC_L_REL - Static variable in class avrora.core.isdl.ast.Expr
PREC_L_XOR - Static variable in class avrora.core.isdl.ast.Expr
PREC_TERM - Static variable in class avrora.core.isdl.ast.Expr
PREC_UN - Static variable in class avrora.core.isdl.ast.Expr
PRESCALER - Static variable in class avrora.sim.radio.CC1000Radio
PRESCALER_reg - Variable in class avrora.sim.radio.CC1000Radio
PRIORITY - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
PROBE - Variable in class avrora.monitors.TraceMonitor.Monitor
PROBE - Static variable in interface avrora.test.probes.ProbeParserConstants
PROGRAM - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
PSEUDO - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
PUSH - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
PUSH - Static variable in interface avrora.syntax.gas.GASParserConstants
PUSH - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
PUSH_EDGE - Static variable in class avrora.stack.Analyzer
PacketMonitor - class avrora.monitors.PacketMonitor.
  Packet monitor implementation.
PacketMonitor() - Constructor for class avrora.monitors.PacketMonitor
  create a new monitor
Parameters() - Method in class avrora.core.isdl.parser.ISDLParser
ParseException - exception avrora.core.isdl.parser.ParseException.
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for class avrora.core.isdl.parser.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for class avrora.core.isdl.parser.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for class avrora.core.isdl.parser.ParseException
ParseException - exception avrora.syntax.atmel.ParseException.
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for class avrora.syntax.atmel.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for class avrora.syntax.atmel.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for class avrora.syntax.atmel.ParseException
ParseException - exception avrora.syntax.gas.ParseException.
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for class avrora.syntax.gas.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for class avrora.syntax.gas.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for class avrora.syntax.gas.ParseException
ParseException - exception avrora.syntax.objdump.ParseException.
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for class avrora.syntax.objdump.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for class avrora.syntax.objdump.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for class avrora.syntax.objdump.ParseException
ParseException - exception avrora.test.probes.ParseException.
  This exception is thrown when parse errors are encountered.
ParseException(Token, int[][], String[]) - Constructor for class avrora.test.probes.ParseException
  This constructor is used by the method "generateParseException" in the generated parser.
ParseException() - Constructor for class avrora.test.probes.ParseException
  The following constructors are for use by you for whatever purpose you can think of.
ParseException(String) - Constructor for class avrora.test.probes.ParseException
PinConnect - class avrora.sim.platform.PinConnect.
  Very simple implementation of pin interconnect between microcontrollers
PinConnect() - Constructor for class avrora.sim.platform.PinConnect
PinConnect.PinEvent - class avrora.sim.platform.PinConnect.PinEvent.
PinConnect.PinEvent() - Constructor for class avrora.sim.platform.PinConnect.PinEvent
PinConnect.PinLink - class avrora.sim.platform.PinConnect.PinLink.
  This class connects two PinNode devices together in two-way communication
PinConnect.PinLink(PinWire) - Constructor for class avrora.sim.platform.PinConnect.PinLink
PinConnect.PinNode - class avrora.sim.platform.PinConnect.PinNode.
  This class stores all the information for a single controller node and its PinWires.
PinConnect.PinNode(Microcontroller, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire, PinWire) - Constructor for class avrora.sim.platform.PinConnect.PinNode
PinWire - class avrora.sim.platform.PinWire.
  The `PinWire` class is the interface for making wire connections to other microcontrollers.
PinWire(Simulator, int, String) - Constructor for class avrora.sim.platform.PinWire
PinWire(Simulator, int, String, int, Microcontroller) - Constructor for class avrora.sim.platform.PinWire
Platform - class avrora.sim.platform.Platform.
  The `Platform` interface represents both a microcontroller instance and the devices connected to it.
Platform(Microcontroller) - Constructor for class avrora.sim.platform.Platform
PlatformFactory - interface avrora.sim.platform.PlatformFactory.
  The `PlatformFactory` interface represents a factory-style interface where an implementor can create multiple platforms of the same type for a given program.
Position - class avrora.sim.radio.freespace.Position.
  Represents a three dim. position
Position(int, int, int) - Constructor for class avrora.sim.radio.freespace.Position
  new position
Position(String, int, int, int) - Constructor for class avrora.sim.radio.freespace.Position
  new position, including node name
PrettyPrinter - class avrora.core.isdl.gen.PrettyPrinter.
PrettyPrinter(Printer) - Constructor for class avrora.core.isdl.gen.PrettyPrinter
PrettyPrinter.DefaultMapRep - class avrora.core.isdl.gen.PrettyPrinter.DefaultMapRep.
PrettyPrinter.MapRep - class avrora.core.isdl.gen.PrettyPrinter.MapRep.
PrettyPrinter.MapRep() - Constructor for class avrora.core.isdl.gen.PrettyPrinter.MapRep
Printer - class avrora.util.Printer.
Printer(PrintStream) - Constructor for class avrora.util.Printer
ProbeDeclaration(ProbeTest) - Method in class avrora.test.probes.ProbeParser
ProbeParser - class avrora.test.probes.ProbeParser.
ProbeParser(InputStream) - Constructor for class avrora.test.probes.ProbeParser
ProbeParser(Reader) - Constructor for class avrora.test.probes.ProbeParser
ProbeParser(ProbeParserTokenManager) - Constructor for class avrora.test.probes.ProbeParser
ProbeParserConstants - interface avrora.test.probes.ProbeParserConstants.
ProbeParserTokenManager - class avrora.test.probes.ProbeParserTokenManager.
ProbeParserTokenManager(SimpleCharStream) - Constructor for class avrora.test.probes.ProbeParserTokenManager
ProbeParserTokenManager(SimpleCharStream, int) - Constructor for class avrora.test.probes.ProbeParserTokenManager
ProbeTest() - Method in class avrora.test.probes.ProbeParser
ProbeTest - class avrora.test.probes.ProbeTest.
ProbeTest.Failure - exception avrora.test.probes.ProbeTest.Failure.
ProbeTest.TestEvent - class avrora.test.probes.ProbeTest.TestEvent.
ProbeTest.TestProbe - class avrora.test.probes.ProbeTest.TestProbe.
ProbeTest.TestWatch - class avrora.test.probes.ProbeTest.TestWatch.
ProbeTestHarness - class avrora.test.ProbeTestHarness.
  The `SimulatorTestHarness` implements a test harness that interfaces the `avrora.test.AutomatedTester` in order to automate testing of the AVR parser and simulator.
ProbeTestHarness() - Constructor for class avrora.test.ProbeTestHarness
ProbedActiveRegister - class avrora.sim.ProbedActiveRegister.
  The `ProbedActiveRegister` class implements a register that has probes attached to it.
ProbedActiveRegister(BaseInterpreter, ActiveRegister, int) - Constructor for class avrora.sim.ProbedActiveRegister
ProcedureMap - class avrora.core.ProcedureMap.
  The `ProcedureMap` class represents a mapping from basic blocks to the procedures that contain them.
ProfileMonitor - class avrora.monitors.ProfileMonitor.
  The `ProfileMonitor` class represents a monitor that can collect profiling information such as counts and branchcounts about the program as it executes.
ProfileMonitor() - Constructor for class avrora.monitors.ProfileMonitor
ProfileMonitor.Monitor - class avrora.monitors.ProfileMonitor.Monitor.
  The `Monitor` inner class contains the probes and formatting code that can report the profile for the program after it has finished executing.
ProfileMonitor.Monitor.CCProbe - class avrora.monitors.ProfileMonitor.Monitor.CCProbe.
  The `CCProbe` class implements a probe that keeps track of the execution count of each instruction as well as the number of cycles that it has consumed.
ProfileMonitor.Monitor.CCProbe(long[], long[]) - Constructor for class avrora.monitors.ProfileMonitor.Monitor.CCProbe
ProfileMonitor.Monitor.CProbe - class avrora.monitors.ProfileMonitor.Monitor.CProbe.
  The `CProbe` class implements a simple probe that keeps a count of how many times each instruction in the program has been executed.
ProfileMonitor.Monitor.CProbe(long[]) - Constructor for class avrora.monitors.ProfileMonitor.Monitor.CProbe
ProfileMonitor.Monitor.PeriodicProfile - class avrora.monitors.ProfileMonitor.Monitor.PeriodicProfile.
  The `PeriodicProfile` class can be used as a simulator event to periodically sample the program counter value.
ProfilingData - class avrora.util.profiling.ProfilingData.
ProfilingData() - Constructor for class avrora.util.profiling.ProfilingData
ProfilingDatabase - class avrora.util.profiling.ProfilingDatabase.
  The profiling database.
ProfilingDatabase() - Constructor for class avrora.util.profiling.ProfilingDatabase
Program - class avrora.core.Program.
  The `Program` class represents a complete program of AVR instructions.
Program(int, int, int, int, int, int) - Constructor for class avrora.core.Program
  The constructor of the `Program` class builds an internal representation of the program that is initially empty, but has the given parameters in terms of how big segments are and where they start.
Program.DataLabel - class avrora.core.Program.DataLabel.
  The `DataLabel` class represents a label within the program that refers to the data segment.
Program.EEPromLabel - class avrora.core.Program.EEPromLabel.
  The `EEPromLabel` class represents a label within the program that refers to the eeprom segment.
Program.Location - class avrora.core.Program.Location.
  The `Location` class represents a location in the program; either named by a label, or an unnamed integer address.
Program.ProgramLabel - class avrora.core.Program.ProgramLabel.
  The `ProgramLabel` class represents a label within the program that refers to the program segment.
ProgramPoint - class avrora.syntax.ProgramPoint.
  The `ProgramPoint` class represents a location within a program for the purposes of tracking error messages and debug information.
ProgramPoint(String, int, int, int) - Constructor for class avrora.syntax.ProgramPoint
ProgramProfiler - class avrora.sim.util.ProgramProfiler.
  The `ProgramProfiler` class implements a probe that can be used to profile pieces of the program or the whole program.
ProgramProfiler(Program) - Constructor for class avrora.sim.util.ProgramProfiler
  The constructor for the program profiler constructs the required internal state to store the invocation counts of each instruction.
ProgramReader - class avrora.core.ProgramReader.
  The `ProgramReader` class represents an object capable of reading a program given the special command line arguments.
ProgramReader(String) - Constructor for class avrora.core.ProgramReader
  The constructor for the `ProgramReader` class builds a new reader with the specified help text.
ProgramTimeProfiler - class avrora.sim.util.ProgramTimeProfiler.
  The `ProgramProfiler` class implements a probe that can be used to profile pieces of the program or the whole program.
ProgramTimeProfiler(Program) - Constructor for class avrora.sim.util.ProgramTimeProfiler
  The constructor for the program profiler constructs the required internal state to store the cycle counts of each instruction.
Property() - Method in class avrora.syntax.objdump.ObjDumpParser
Proportion - class avrora.util.profiling.Proportion.
  This class represents the proportion of different items with respect to one another.
Proportion(String) - Constructor for class avrora.util.profiling.Proportion
  Public constructor that takes a string name.
Proportion.Share - class avrora.util.profiling.Proportion.Share.
  Internal class that encapsulates both a counter and the fraction of the total that this named Share represents.
Proportion.Share(String) - Constructor for class avrora.util.profiling.Proportion.Share
Proportion.Share(String, int) - Constructor for class avrora.util.profiling.Proportion.Share
paint(Graphics) - Method in class avrora.gui.GraphEvents
  This actually paints the graph...note that it repaints the whole graph everytime its called (to improve performance, we could make use of an update function) The code here is actually faily ugly but eh..
paint(Graphics) - Method in class avrora.gui.GraphNumbers
  This actually paints the graph...note that it repaints the whole graph everytime its called (to improve performance, we could make use of an update function) The code here is actually faily ugly but eh..
paint() - Method in class avrora.gui.MonitorPanel
  This function will be called by PaintThread if it detects that this monitor is the currently displayed monitor
panel - Variable in class avrora.gui.SingleNodeMonitor.SingleNodePanel
param - Variable in class avrora.Avrora.Error
parent - Variable in class avrora.core.isdl.EncodingDecl.Derived
parseCommandLine(String[]) - Method in class avrora.util.Options
parseError(String, String, String) - Method in class avrora.util.Option
  The `parseError()` method is called by an option implementation when there is a problem parsing the value for an option supplied by the user on the command line.
parseOption(String) - Method in class avrora.util.Options
parseOptions(String[]) - Static method in class avrora.Main
  The `parseOptions()` method takes an array of strings and parses it, extracting the options and storing the option values in the internal state of main.
path - Variable in class avrora.sim.Simulation.Node
pause() - Method in class avrora.gui.SimTimeEvents.PauseEvent
pause - Variable in class avrora.gui.SimTimeEvents
  This PauseEvent can be inserted in the sim directly
pause() - Method in class avrora.sim.Simulation
  The `pause()` method pauses the simulation.
pause() - Method in class avrora.sim.clock.IntervalSynchronizer
  The `pause()` method temporarily pauses the simulation.
pause() - Method in class avrora.sim.clock.StepSynchronizer.RunThread
pause() - Method in class avrora.sim.clock.StepSynchronizer
  The `pause()` method temporarily pauses the simulation.
pause() - Method in class avrora.sim.clock.Synchronizer
  The `pause()` method temporarily pauses the simulation.
pause() - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `pause()` method temporarily pauses the simulation.
paused - Variable in class avrora.sim.Simulation
pc - Variable in class avrora.core.Disassembler.InvalidInstruction
pc - Variable in class avrora.sim.BaseInterpreter
pc - Variable in class avrora.stack.AbstractState
pc - Variable in class avrora.stack.isea.ISEInterpreter
peek(CharacterIterator) - Static method in class avrora.util.StringUtil
peekAndEat(CharacterIterator, char) - Static method in class avrora.util.StringUtil
pending - Variable in class avrora.sim.InterruptTable
period - Variable in class avrora.sim.clock.IntervalSynchronizer
  `period` is the number of cycles on a member local clock per cycle on the global clock.
period - Variable in class avrora.sim.mcu.SPI
period - Variable in class avrora.sim.radio.Channel
periods - Variable in class avrora.sim.mcu.Timer16Bit
periods0 - Static variable in class avrora.sim.mcu.ATMegaFamily
periods1 - Static variable in class avrora.sim.mcu.ATMegaFamily
periods2 - Static variable in class avrora.sim.mcu.ATMegaFamily
periods3 - Static variable in class avrora.sim.mcu.ATMegaFamily
pinAssignments - Variable in class avrora.sim.mcu.MicrocontrollerProperties
pinConnect - Static variable in class avrora.sim.platform.PinConnect
pinConnect - Variable in class avrora.sim.platform.Seres
pinConnections - Variable in class avrora.sim.platform.PinConnect
pinName - Variable in class avrora.sim.platform.PinWire
pinNodes - Variable in class avrora.sim.platform.PinConnect
pinPrinter - Variable in class avrora.sim.mcu.AtmelMicrocontroller
pinWires - Variable in class avrora.sim.platform.PinConnect.PinLink
pins - Variable in class avrora.sim.mcu.ATMegaFamily.DirectionRegister
pins - Variable in class avrora.sim.mcu.ATMegaFamily.PinRegister
pins - Variable in class avrora.sim.mcu.ATMegaFamily.PortRegister
pins - Variable in class avrora.sim.mcu.AtmelMicrocontroller
platform - Variable in class avrora.monitors.EnergyMonitor.Monitor
platform - Variable in class avrora.sim.Simulation.Node
platform - Variable in class avrora.sim.mcu.AtmelMicrocontroller
platformFactory - Variable in class avrora.sim.Simulation.Node
pmap - Variable in class avrora.actions.CFGAction
pmap - Variable in class avrora.stack.isea.ISEAnalyzer
pname - Variable in class avrora.core.isdl.EncodingDecl.Derived
point - Variable in class avrora.syntax.SimplifierError
policy - Variable in class avrora.stack.AbstractInterpreter
pop(MutableState) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `pop()` method is called by the abstract interpreter when a pop from the stack is ecountered in the program.
pop(MutableState) - Method in interface avrora.stack.AnalyzerPolicy
  The `pop()` method is called by the abstract interpreter when a pop from the stack is ecountered in the program.
pop() - Method in class avrora.stack.isea.ISEAbstractState
popByte() - Method in class avrora.sim.BaseInterpreter
  The `popByte()` method pops a byte from the stack by reading from the address pointed to by SP+1 and incrementing the stack pointer.
popByte() - Method in class avrora.stack.isea.ISEInterpreter
popPC() - Method in class avrora.sim.GenInterpreter
portNumber - Variable in class avrora.sim.platform.SerialForwarder
post(int) - Method in class avrora.sim.InterruptTable
  The `post()` method is called by the interpreter when an interrupt is posted.
postReturn(ISEState) - Method in class avrora.stack.isea.ISEInterpreter
postReturnFromInterrupt(ISEState) - Method in class avrora.stack.isea.ISEInterpreter
posted - Variable in class avrora.sim.InterruptTable
power - Variable in class avrora.sim.platform.sensors.LightSensor
precedence - Variable in class avrora.core.isdl.ast.Arith.BinOp
  The `precedence` field stores the precedence level of this binary operation.
precedence - Variable in class avrora.core.isdl.ast.Logical.BinOp
  The `precedence` field stores the precedence level of this binary operation.
prefix - Variable in class avrora.Version
  The `prefix` field stores the string that the prefix of the version (if any) for this version.
prevCharIsCR - Variable in class avrora.core.isdl.parser.SimpleCharStream
prevCharIsCR - Variable in class avrora.syntax.atmel.SimpleCharStream
prevCharIsCR - Variable in class avrora.syntax.gas.SimpleCharStream
prevCharIsCR - Variable in class avrora.syntax.objdump.SimpleCharStream
prevCharIsCR - Variable in class avrora.test.probes.SimpleCharStream
prevCharIsLF - Variable in class avrora.core.isdl.parser.SimpleCharStream
prevCharIsLF - Variable in class avrora.syntax.atmel.SimpleCharStream
prevCharIsLF - Variable in class avrora.syntax.gas.SimpleCharStream
prevCharIsLF - Variable in class avrora.syntax.objdump.SimpleCharStream
prevCharIsLF - Variable in class avrora.test.probes.SimpleCharStream
primes - Static variable in class avrora.stack.AbstractState
  The `primes` field stores the first 32 prime integers that follow 2.
print(int) - Method in class avrora.stack.isea.ISEAbstractState
print(String) - Method in class avrora.util.Printer
print(int[], String[]) - Static method in class avrora.util.Terminal
print(int, String) - Static method in class avrora.util.Terminal
print(String) - Static method in class avrora.util.Terminal
print(String) - Method in class avrora.util.Verbose.Printer
printBlue(String) - Static method in class avrora.util.Terminal
printBrightBlue(String) - Static method in class avrora.util.Terminal
printBrightCyan(String) - Static method in class avrora.util.Terminal
printBrightGreen(String) - Static method in class avrora.util.Terminal
printBrightRed(String) - Static method in class avrora.util.Terminal
printCyan(String) - Static method in class avrora.util.Terminal
printDescription() - Method in class avrora.util.Option
  The `printDescription()` method prints out a well-formatted representation of the description of the item to the terminal.
printDistribution(int, int[]) - Method in class avrora.util.profiling.Distribution
  Print the distribution using stars
printEdge(StateCache.State, int, int, StateCache.State) - Static method in class avrora.stack.StatePrinter
printEdge(int, int, StateCache.State) - Static method in class avrora.stack.StatePrinter
printGreen(String) - Static method in class avrora.util.Terminal
printHeader(String, String) - Method in class avrora.util.Option
  The `printHeader()` method prints out the first line of the help text for this item.
printHelp() - Method in class avrora.util.Option.Bool
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option.Double
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option.Interval
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option.List
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option.Long
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option.Str
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.Option
  The `printHelp()` method prints out a textual paragraph of the help item for this option to the terminal.
printHelp() - Method in class avrora.util.help.ClassMapValueItem
  The `printHelp()` method prints out a well-formatted paragraph for this option and the value specified.
printHelp() - Method in class avrora.util.help.HelpCategory
  The `printHelp()` method prints out all of the help sections in order for this category.
printHelp() - Method in interface avrora.util.help.HelpItem
  The `printHelp()` method prints a representation of the help to the console, formatted appropriately according to the terminal size.
printHelp() - Method in class avrora.util.help.SubcategoryItem
  The `printHelp()` method prints out a well-formatted paragraph containing the help for this subcategory.
printHelp() - Method in class avrora.util.help.ValueItem
  The `printHelp()` method prints out a well-formatted help paragraph for this option and its value, containing the specified help text.
printIOReg(String, char) - Static method in class avrora.stack.StatePrinter
printPair(int, int, String, String, String) - Static method in class avrora.util.Terminal
printRed(String) - Static method in class avrora.util.Terminal
printSeparator(int) - Static method in class avrora.util.TermUtil
  The `printSeparator()` method prints a horizontal bar on the terminal that helps to separate different sections of textual output.
printSeparator(int, String) - Static method in class avrora.util.TermUtil
  The `printSeparator()` method prints a horizontal bar on the terminal that helps to separate different sections of textual output.
printSimHeader() - Static method in class avrora.actions.SimAction
  The `printSimHeader()` method simply prints the first line of output that names the columns for the events outputted by the rest of the simulation.
printState(String, StateCache.State) - Static method in class avrora.stack.StatePrinter
printStateLine(StateCache.State, String, int, int) - Static method in class avrora.stack.StatePrinter
printStateName(StateCache.State) - Static method in class avrora.stack.StatePrinter
printStatus() - Method in class avrora.sim.mcu.ADC.ADCRegister
printStatus() - Method in class avrora.sim.mcu.ADC.ControlRegister
printStatus() - Method in class avrora.sim.mcu.ADC.MUXRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.CALRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.CurrentRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.LockRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.MainRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.Modem0Register
printStatus() - Method in class avrora.sim.radio.CC1000Radio.PA_POWRegister
printStatus() - Method in class avrora.sim.radio.CC1000Radio.RadioRegister
printThinSeparator(int) - Static method in class avrora.util.TermUtil
  The `printThinSeparator()` method prints a horizontal bar on the terminal that helps to separate different sections of textual output.
printTriple(int, int, int, String, String, String, String, String) - Static method in class avrora.util.Terminal
printYellow(String) - Static method in class avrora.util.Terminal
printer - Variable in class avrora.core.isdl.gen.PrettyPrinter
printer - Variable in class avrora.sim.dbbc.DBBC
printer - Variable in class avrora.stack.Analyzer
printer - Variable in class avrora.stack.isea.ISEAnalyzer
printer - Variable in class avrora.stack.isea.ISEInterpreter
printer - Variable in class avrora.syntax.objdump.ODPPAction
println(String) - Method in class avrora.sim.Simulator.Printer
  The `println()` method prints the node ID, the time, and a message to the console, synchronizing with other threads so that output is not interleaved.
println(String) - Method in class avrora.util.Printer
println(int, String) - Static method in class avrora.util.Terminal
println(String) - Static method in class avrora.util.Terminal
println(String) - Method in class avrora.util.Verbose.Printer
prio - Variable in class avrora.core.isdl.EncodingDecl
probe - Variable in class avrora.sim.CodeSegment.ProbedInstr
probe - Variable in class avrora.sim.platform.LED
probe - Variable in class avrora.sim.platform.PinWire
probe - Variable in class avrora.sim.util.SequenceProbe
  The immutable `probe` field stores a reference to the probe passed in the constructor.
probes - Variable in class avrora.sim.InterruptTable
probes - Variable in class avrora.sim.radio.CC1000Radio
procMap - Variable in class avrora.core.ProcedureMap
procedureSummaries - Variable in class avrora.stack.isea.ISEAnalyzer
process() - Method in class avrora.core.isdl.Architecture
process(LinkedList) - Method in class avrora.core.isdl.gen.Canonicalizer
process(LinkedList) - Method in class avrora.core.isdl.gen.ConstantPropagator
process(LinkedList) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
process(List) - Method in class avrora.core.isdl.gen.Inliner
process(Options, String[]) - Method in class avrora.sim.Simulation
  The `process()` method is called when the simulation is created from the command line.
process(Options, String[]) - Method in class avrora.sim.types.SensorSimulation
  The `process()` method processes options and arguments from the command line.
process(Options, String[]) - Method in class avrora.sim.types.SingleSimulation
  The `process()` method processes options and arguments from the command line.
process(Options) - Method in class avrora.util.Options
process(Properties) - Method in class avrora.util.Options
processData() - Method in class avrora.util.profiling.Counter
processData() - Method in class avrora.util.profiling.DataItem
processData() - Method in class avrora.util.profiling.Database
  Process the data in the database.
processData() - Method in class avrora.util.profiling.Distribution
processData() - Method in class avrora.util.profiling.MinMaxMean
  process the data so far and update internal statistics.
processData() - Method in class avrora.util.profiling.Proportion.Share
processData() - Method in class avrora.util.profiling.Proportion
  Do the computations and compute the proportions of each.
processMonitorList() - Method in class avrora.sim.Simulation
  The `processMonitorList()` method builds a list of `MonitorFactory` instances from the list of strings given as an option at the command line.
processNewEdges() - Method in class avrora.stack.Analyzer
processNewReturns() - Method in class avrora.stack.Analyzer
  The `processPropagationList()` method walks through a list of target/caller state pairs, propagating callers to return states.
processOptions(Options) - Method in class avrora.monitors.MonitorFactory
  The `processOptions()` method is called after the `MonitorFactory` instance is created.
processReturnState(ISEState, ISEState) - Method in class avrora.stack.isea.ISEInterpreter
profile - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
profile - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
program - Variable in class avrora.actions.CFGAction
program - Variable in class avrora.core.ControlFlowGraph
  The `program` field stores a reference to the program to which this control flow graph corresponds.
program - Variable in class avrora.core.LoadableProgram
program - Variable in class avrora.core.SourceMapping
  The `program` field stores a reference to the program for this source mapping.
program - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
program - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
program - Variable in class avrora.monitors.MemoryMonitor.Monitor
program - Variable in class avrora.monitors.ProfileMonitor.Monitor
program - Variable in class avrora.monitors.SleepMonitor.Monitor
program - Variable in class avrora.monitors.StackMonitor.Monitor
program - Variable in class avrora.monitors.TraceMonitor.Monitor
program - Variable in class avrora.sim.Simulator
  The `program` field allows descendants of the `Simulator` class to access the program that is currently loaded in the simulator.
program - Variable in class avrora.sim.dbbc.DBBC
program - Variable in class avrora.sim.util.ProgramProfiler
  The `program` field stores a reference to the program being profiled.
program - Variable in class avrora.sim.util.ProgramTimeProfiler
  The `program` field stores a reference to the program being profiled.
program - Variable in class avrora.sim.util.RangeProfiler
  The `program` field stores a reference to the program being profiled.
program - Variable in class avrora.stack.AbstractInterpreter
program - Variable in class avrora.stack.Analyzer
program - Variable in class avrora.stack.isea.ISEAnalyzer
program - Variable in class avrora.stack.isea.ISEInterpreter
programPoint - Variable in class avrora.syntax.AbstractParseException
programSegment - Variable in class avrora.syntax.Module
program_end - Variable in class avrora.core.Program
  The `program_end` field records the address following the highest address in the program segment that contains valid code or data.
program_length - Variable in class avrora.core.Program
  The `program_length` field records the size of the program (the difference between `program_start` and `program_end`.
program_start - Variable in class avrora.core.Program
  The `program_start` field records the lowest address in the program segment that contains valid code or data.
propagateSignals() - Method in class avrora.sim.platform.PinConnect.PinLink
properties - Variable in class avrora.core.Instr
  The `properties` field stores a reference to the properties of the instruction, including its size, number of cycles, etc.
properties - Variable in class avrora.sim.mcu.AtmelMicrocontroller
properties - Variable in class avrora.test.TestCase
props - Static variable in class avrora.sim.mcu.ATMega128
  The `props` field stores a static reference to a properties object shared by all of the instances of this microcontroller.
props - Static variable in class avrora.sim.mcu.ATMega16
  The `props` field stores a static reference to a properties object shared by all of the instances of this microcontroller.
props - Static variable in class avrora.sim.mcu.ATMega32
  The `props` field stores a static reference to a properties object shared by all of the instances of this microcontroller.
proto - Variable in class avrora.syntax.Item.Instruction
pseudo - Variable in class avrora.core.isdl.InstrDecl
push(MutableState, char) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `push()` method is called by the abstract interpreter when a push to the stack is encountered in the program.
push(MutableState, char) - Method in interface avrora.stack.AnalyzerPolicy
  The `push()` method is called by the abstract interpreter when a push to the stack is encountered in the program.
push(byte) - Method in class avrora.stack.isea.ISEAbstractState
pushByte(byte) - Method in class avrora.sim.BaseInterpreter
  The `pushByte()` method pushes a byte onto the stack by writing to the memory address pointed to by the stack pointer and decrementing the stack pointer.
pushPC(int) - Method in class avrora.sim.GenInterpreter
pushState(MutableState) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `pushState` method is called by the abstract interpreter when a state is forked by the abstract interpreter (for example when a branch condition is not known and both branches must be taken.
pushState(MutableState) - Method in interface avrora.stack.AnalyzerPolicy
  The `pushState` method is called by the abstract interpreter when a state is forked by the abstract interpreter (for example when a branch condition is not known and both branches must be taken.
put(String, Expr) - Method in class avrora.core.isdl.gen.ConstantPropagator.ConstantEnvironment

## Q

QUOTE - Static variable in class avrora.util.StringUtil
qembed(String, String, String) - Static method in class avrora.util.StringUtil
quote(Object) - Static method in class avrora.util.StringUtil
  The `quote()` method simply adds double quotes around a string.

## R

R0 - Static variable in class avrora.core.Register
R0 - Static variable in class avrora.sim.GenInterpreter
R0 - Static variable in class avrora.stack.isea.ISEValue
R1 - Static variable in class avrora.core.Register
R1 - Static variable in class avrora.sim.GenInterpreter
R1 - Static variable in class avrora.stack.isea.ISEValue
R10 - Static variable in class avrora.core.Register
R10 - Static variable in class avrora.sim.GenInterpreter
R10 - Static variable in class avrora.stack.isea.ISEValue
R11 - Static variable in class avrora.core.Register
R11 - Static variable in class avrora.sim.GenInterpreter
R11 - Static variable in class avrora.stack.isea.ISEValue
R12 - Static variable in class avrora.core.Register
R12 - Static variable in class avrora.sim.GenInterpreter
R12 - Static variable in class avrora.stack.isea.ISEValue
R13 - Static variable in class avrora.core.Register
R13 - Static variable in class avrora.sim.GenInterpreter
R13 - Static variable in class avrora.stack.isea.ISEValue
R14 - Static variable in class avrora.core.Register
R14 - Static variable in class avrora.sim.GenInterpreter
R14 - Static variable in class avrora.stack.isea.ISEValue
R15 - Static variable in class avrora.core.Register
R15 - Static variable in class avrora.sim.GenInterpreter
R15 - Static variable in class avrora.stack.isea.ISEValue
R16 - Static variable in class avrora.core.Register
R16 - Static variable in class avrora.sim.GenInterpreter
R16 - Static variable in class avrora.stack.isea.ISEValue
R17 - Static variable in class avrora.core.Register
R17 - Static variable in class avrora.sim.GenInterpreter
R17 - Static variable in class avrora.stack.isea.ISEValue
R18 - Static variable in class avrora.core.Register
R18 - Static variable in class avrora.sim.GenInterpreter
R18 - Static variable in class avrora.stack.isea.ISEValue
R19 - Static variable in class avrora.core.Register
R19 - Static variable in class avrora.sim.GenInterpreter
R19 - Static variable in class avrora.stack.isea.ISEValue
R2 - Static variable in class avrora.core.Register
R2 - Static variable in class avrora.sim.GenInterpreter
R2 - Static variable in class avrora.stack.isea.ISEValue
R20 - Static variable in class avrora.core.Register
R20 - Static variable in class avrora.sim.GenInterpreter
R20 - Static variable in class avrora.stack.isea.ISEValue
R21 - Static variable in class avrora.core.Register
R21 - Static variable in class avrora.sim.GenInterpreter
R21 - Static variable in class avrora.stack.isea.ISEValue
R22 - Static variable in class avrora.core.Register
R22 - Static variable in class avrora.sim.GenInterpreter
R22 - Static variable in class avrora.stack.isea.ISEValue
R23 - Static variable in class avrora.core.Register
R23 - Static variable in class avrora.sim.GenInterpreter
R23 - Static variable in class avrora.stack.isea.ISEValue
R24 - Static variable in class avrora.core.Register
R24 - Static variable in class avrora.sim.GenInterpreter
R24 - Static variable in class avrora.stack.isea.ISEValue
R25 - Static variable in class avrora.core.Register
R25 - Static variable in class avrora.sim.GenInterpreter
R25 - Static variable in class avrora.stack.isea.ISEValue
R26 - Static variable in class avrora.core.Register
R26 - Static variable in class avrora.sim.GenInterpreter
R26 - Static variable in class avrora.stack.isea.ISEValue
R27 - Static variable in class avrora.core.Register
R27 - Static variable in class avrora.sim.GenInterpreter
R27 - Static variable in class avrora.stack.isea.ISEValue
R28 - Static variable in class avrora.core.Register
R28 - Static variable in class avrora.sim.GenInterpreter
R28 - Static variable in class avrora.stack.isea.ISEValue
R29 - Static variable in class avrora.core.Register
R29 - Static variable in class avrora.sim.GenInterpreter
R29 - Static variable in class avrora.stack.isea.ISEValue
R3 - Static variable in class avrora.core.Register
R3 - Static variable in class avrora.sim.GenInterpreter
R3 - Static variable in class avrora.stack.isea.ISEValue
R30 - Static variable in class avrora.core.Register
R30 - Static variable in class avrora.sim.GenInterpreter
R30 - Static variable in class avrora.stack.isea.ISEValue
R31 - Static variable in class avrora.core.Register
R31 - Static variable in class avrora.sim.GenInterpreter
R31 - Static variable in class avrora.stack.isea.ISEValue
R4 - Static variable in class avrora.core.Register
R4 - Static variable in class avrora.sim.GenInterpreter
R4 - Static variable in class avrora.stack.isea.ISEValue
R5 - Static variable in class avrora.core.Register
R5 - Static variable in class avrora.sim.GenInterpreter
R5 - Static variable in class avrora.stack.isea.ISEValue
R6 - Static variable in class avrora.core.Register
R6 - Static variable in class avrora.sim.GenInterpreter
R6 - Static variable in class avrora.stack.isea.ISEValue
R7 - Static variable in class avrora.core.Register
R7 - Static variable in class avrora.sim.GenInterpreter
R7 - Static variable in class avrora.stack.isea.ISEValue
R8 - Static variable in class avrora.core.Register
R8 - Static variable in class avrora.sim.GenInterpreter
R8 - Static variable in class avrora.stack.isea.ISEValue
R9 - Static variable in class avrora.core.Register
R9 - Static variable in class avrora.sim.GenInterpreter
R9 - Static variable in class avrora.stack.isea.ISEValue
RAMPZ - Variable in class avrora.sim.BaseInterpreter
RAMPZ - Static variable in interface avrora.stack.IORegisterConstants
RANDOMSEED - Variable in class avrora.sim.Simulation
RANDOM_START - Variable in class avrora.sim.types.SensorSimulation
RBRACKET - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
RBRACKET - Static variable in interface avrora.test.probes.ProbeParserConstants
RCALL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
RCALL - Static variable in interface avrora.syntax.gas.GASParserConstants
RCALL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
RDL_set - Static variable in class avrora.core.Register
REGISTER - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
REMOVE - Static variable in interface avrora.test.probes.ProbeParserConstants
REPORT_SECONDS - Variable in class avrora.actions.SimAction
REPORT_SECONDS - Static variable in class avrora.util.StringUtil
RESERVE - Variable in class avrora.actions.AnalyzeStackAction
RESERVED - Static variable in class avrora.sim.mcu.RegisterLayout
RESET_N - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
RESULT - Static variable in interface avrora.test.probes.ProbeParserConstants
RET - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
RET - Static variable in interface avrora.syntax.gas.GASParserConstants
RET - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
RETI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
RETI - Static variable in interface avrora.syntax.gas.GASParserConstants
RETI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
RETI_EDGE - Static variable in class avrora.stack.Analyzer
RETI_STATE - Static variable in class avrora.stack.Analyzer
RETURN - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
RET_EDGE - Static variable in class avrora.stack.Analyzer
RET_STATE - Static variable in class avrora.stack.Analyzer
REUSE_CACHE - Variable in class avrora.sim.dbbc.DBBC
RJMP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
RJMP - Static variable in interface avrora.syntax.gas.GASParserConstants
RJMP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ROL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ROL - Static variable in interface avrora.syntax.gas.GASParserConstants
ROL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ROR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ROR - Static variable in interface avrora.syntax.gas.GASParserConstants
ROR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
RPAREN - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
RPAREN - Static variable in class avrora.util.StringUtil
RWRegister - class avrora.sim.RWRegister.
  The `RWRegister` class is an implementation of an IO register that has the simple, default behavior of being able to read and write just as a general purpose register or byte in SRAM.
RWRegister() - Constructor for class avrora.sim.RWRegister
RX - Static variable in class avrora.sim.GenInterpreter
RXTX - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
RX_PD - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
RY - Static variable in class avrora.sim.GenInterpreter
RZ - Static variable in class avrora.sim.GenInterpreter
Radio - interface avrora.sim.radio.Radio.
  The `Radio` interface should be implemented by classes which would like to act as radios and access an instance of the `RadioAir` interface.
Radio.RadioController - interface avrora.sim.radio.Radio.RadioController.
  A `RadioController` is an object installed into a Microcontroller.
Radio.RadioProbe - interface avrora.sim.radio.Radio.RadioProbe.
  The `RadioProbe` interface encapsulates the idea of a probe inserted on a radio that is notified when changes in the state of the radio occur and when packets are sent and received from this radio.
Radio.RadioProbe.Empty - class avrora.sim.radio.Radio.RadioProbe.Empty.
Radio.RadioProbe.Empty() - Constructor for class avrora.sim.radio.Radio.RadioProbe.Empty
Radio.Transmission - class avrora.sim.radio.Radio.Transmission.
  A `Transmission` is an object describing the data transmitted over `RadioAir` over some period of time.
Radio.Transmission(byte, long, long) - Constructor for class avrora.sim.radio.Radio.Transmission
RadioAir - interface avrora.sim.radio.RadioAir.
  Interface for the `RadioAir`.
RadioEnergy - class avrora.sim.radio.RadioEnergy.
  Constants for CC1000 radio energy consumption
RadioEnergy() - Constructor for class avrora.sim.radio.RadioEnergy
RandomSensorData - class avrora.sim.platform.sensors.RandomSensorData.
RandomSensorData(Random) - Constructor for class avrora.sim.platform.sensors.RandomSensorData
RangeProfiler - class avrora.sim.util.RangeProfiler.
  The `RangeProfiler` class implements a probe that can be used to profile a range of addresses in the program.
RangeProfiler(Program, int, int) - Constructor for class avrora.sim.util.RangeProfiler
  The constructor for the program profiler constructs the required internal state to store the invocation counts of each instruction.
Raw2() - Method in class avrora.syntax.objdump.ObjDumpParser
Raw4() - Method in class avrora.syntax.objdump.ObjDumpParser
RawData() - Method in class avrora.syntax.objdump.ObjDumpParser
RawModule - class avrora.syntax.objdump.RawModule.
  The `RawModule` is a subclass of `Module` that allows random access when creating a program from an input source.
RawModule(boolean, boolean) - Constructor for class avrora.syntax.objdump.RawModule
ReInit(InputStream) - Method in class avrora.core.isdl.parser.ISDLParser
ReInit(Reader) - Method in class avrora.core.isdl.parser.ISDLParser
ReInit(ISDLParserTokenManager) - Method in class avrora.core.isdl.parser.ISDLParser
ReInit(SimpleCharStream) - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
ReInit(SimpleCharStream, int) - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
ReInit(Reader, int, int, int) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(Reader, int, int) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(Reader) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(InputStream, int, int, int) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(InputStream) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(InputStream, int, int) - Method in class avrora.core.isdl.parser.SimpleCharStream
ReInit(InputStream, Module, String) - Method in class avrora.syntax.atmel.AtmelParser
ReInit(Reader, Module, String) - Method in class avrora.syntax.atmel.AtmelParser
ReInit(InputStream) - Method in class avrora.syntax.atmel.AtmelParser
ReInit(Reader) - Method in class avrora.syntax.atmel.AtmelParser
ReInit(AtmelParserTokenManager) - Method in class avrora.syntax.atmel.AtmelParser
ReInit(SimpleCharStream) - Method in class avrora.syntax.atmel.AtmelParserTokenManager
ReInit(SimpleCharStream, int) - Method in class avrora.syntax.atmel.AtmelParserTokenManager
ReInit(SimpleCharStream, String) - Method in class avrora.syntax.atmel.FileMarkingTokenManager
ReInit(SimpleCharStream, int, String) - Method in class avrora.syntax.atmel.FileMarkingTokenManager
ReInit(Reader, int, int, int) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(Reader, int, int) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(Reader) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(InputStream, int, int, int) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(InputStream) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(InputStream, int, int) - Method in class avrora.syntax.atmel.SimpleCharStream
ReInit(SimpleCharStream, String) - Method in class avrora.syntax.gas.FileMarkingTokenManager
ReInit(SimpleCharStream, int, String) - Method in class avrora.syntax.gas.FileMarkingTokenManager
ReInit(InputStream, Module, String) - Method in class avrora.syntax.gas.GASParser
ReInit(Reader, Module, String) - Method in class avrora.syntax.gas.GASParser
ReInit(InputStream) - Method in class avrora.syntax.gas.GASParser
ReInit(Reader) - Method in class avrora.syntax.gas.GASParser
ReInit(GASParserTokenManager) - Method in class avrora.syntax.gas.GASParser
ReInit(SimpleCharStream) - Method in class avrora.syntax.gas.GASParserTokenManager
ReInit(SimpleCharStream, int) - Method in class avrora.syntax.gas.GASParserTokenManager
ReInit(Reader, int, int, int) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(Reader, int, int) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(Reader) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(InputStream, int, int, int) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(InputStream) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(InputStream, int, int) - Method in class avrora.syntax.gas.SimpleCharStream
ReInit(SimpleCharStream, String) - Method in class avrora.syntax.objdump.FileMarkingTokenManager
ReInit(SimpleCharStream, int, String) - Method in class avrora.syntax.objdump.FileMarkingTokenManager
ReInit(InputStream, RawModule, String) - Method in class avrora.syntax.objdump.ObjDumpParser
ReInit(Reader, RawModule, String) - Method in class avrora.syntax.objdump.ObjDumpParser
ReInit(InputStream) - Method in class avrora.syntax.objdump.ObjDumpParser
ReInit(Reader) - Method in class avrora.syntax.objdump.ObjDumpParser
ReInit(ObjDumpParserTokenManager) - Method in class avrora.syntax.objdump.ObjDumpParser
ReInit(SimpleCharStream) - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
ReInit(SimpleCharStream, int) - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
ReInit(Reader, int, int, int) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(Reader, int, int) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(Reader) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(InputStream, int, int, int) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(InputStream) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(InputStream, int, int) - Method in class avrora.syntax.objdump.SimpleCharStream
ReInit(InputStream) - Method in class avrora.test.probes.ProbeParser
ReInit(Reader) - Method in class avrora.test.probes.ProbeParser
ReInit(ProbeParserTokenManager) - Method in class avrora.test.probes.ProbeParser
ReInit(SimpleCharStream) - Method in class avrora.test.probes.ProbeParserTokenManager
ReInit(SimpleCharStream, int) - Method in class avrora.test.probes.ProbeParserTokenManager
ReInit(Reader, int, int, int) - Method in class avrora.test.probes.SimpleCharStream
ReInit(Reader, int, int) - Method in class avrora.test.probes.SimpleCharStream
ReInit(Reader) - Method in class avrora.test.probes.SimpleCharStream
ReInit(InputStream, int, int, int) - Method in class avrora.test.probes.SimpleCharStream
ReInit(InputStream) - Method in class avrora.test.probes.SimpleCharStream
ReInit(InputStream, int, int) - Method in class avrora.test.probes.SimpleCharStream
RealTimeMonitor - class avrora.monitors.RealTimeMonitor.
  The `RealTimeMonitor` class slows down the simulation to real-time.
RealTimeMonitor() - Constructor for class avrora.monitors.RealTimeMonitor
Register - class avrora.core.Register.
  The `Register` class represents a register available on the AVR instruction set.
Register() - Method in class avrora.syntax.atmel.AtmelParser
Register() - Method in class avrora.syntax.gas.GASParser
Register() - Method in class avrora.syntax.objdump.ObjDumpParser
Register.Set - class avrora.core.Register.Set.
  The `Set` class represents a set of registers.
RegisterDecl(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
RegisterExpected(SyntacticOperand) - Method in class avrora.syntax.AVRErrorReporter
RegisterLayout - class avrora.sim.mcu.RegisterLayout.
  The `RegisterLayout` class stores information about the IO register addresses for a particular microcontroller model.
RegisterLayout(int, int) - Constructor for class avrora.sim.mcu.RegisterLayout
  The constructor for the `RegisterLayout` class creates a new register layout with the specified size.
RegisterLayout.Field - class avrora.sim.mcu.RegisterLayout.Field.
RegisterLayout.RegisterInfo - class avrora.sim.mcu.RegisterLayout.RegisterInfo.
RegisterLayout.SubField - class avrora.sim.mcu.RegisterLayout.SubField.
RegisterSet - class avrora.sim.mcu.RegisterSet.
  The `RegisterSet` class is a utility that simplifies the implementation of certain IO registers that contain many types of fields whose bits may be spread out and mixed up over multiple IO registers.
RegisterSet(RegisterLayout) - Constructor for class avrora.sim.mcu.RegisterSet
  The constructor for the `RegisterSet` class creates a new register set with the specified register layout and size.
RegisterSet.Field - class avrora.sim.mcu.RegisterSet.Field.
  The `Field` class represents a collection of bits that represent a quantity used by a device.
RegisterSet.Field() - Constructor for class avrora.sim.mcu.RegisterSet.Field
RegisterSet.MultiFieldRegister - class avrora.sim.mcu.RegisterSet.MultiFieldRegister.
  The `Register` class implements an IO register that is directly read and written by the program.
RelExpr() - Method in class avrora.syntax.atmel.AtmelParser
RelExpr() - Method in class avrora.syntax.gas.GASParser
RelExpr() - Method in class avrora.syntax.objdump.ObjDumpParser
Rel_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
ReplaySensorData - class avrora.sim.platform.sensors.ReplaySensorData.
  The `ReplaySensorData` class implements a sensor data source that replays the sensor data from a file.
ReplaySensorData(Microcontroller, String) - Constructor for class avrora.sim.platform.sensors.ReplaySensorData
ReprogrammableCodeSegment - class avrora.sim.mcu.ReprogrammableCodeSegment.
  The `ReprogrammableCodeSegment` class represents a flash segment that stores code.
ReprogrammableCodeSegment(String, int, BaseInterpreter, Segment.ErrorReporter, int) - Constructor for class avrora.sim.mcu.ReprogrammableCodeSegment
  The constructor for the `ReprogrammableCodeSegment` creates a new instance with the specified name, with the specified size, connected to the specified microcontroller, with the given page size.
ReprogrammableCodeSegment.DisassembleInstr - class avrora.sim.mcu.ReprogrammableCodeSegment.DisassembleInstr.
  The `DisasssembleInstr` class represents an instruction that is used by the interpreter to support dynamic code update.
ReprogrammableCodeSegment.Factory - class avrora.sim.mcu.ReprogrammableCodeSegment.Factory.
  The `ReprogrammableCodeSegment.Factory` class represents a class capable of creating a new code segment for a new interpreter.
ReserveDirective() - Method in class avrora.syntax.atmel.AtmelParser
ReserveDirective() - Method in class avrora.syntax.gas.GASParser
Result(ProbeTest) - Method in class avrora.test.probes.ProbeParser
ReturnStmt - class avrora.core.isdl.ast.ReturnStmt.
  The `ReturnStmt` class represents a return statement within a subroutine that returns a value to its caller.
ReturnStmt(Expr) - Constructor for class avrora.core.isdl.ast.ReturnStmt
  The constructor of the `ReturnStmt` class simply initializes the public reference to the expression that is returned as the result.
ReturnStmt() - Method in class avrora.core.isdl.parser.ISDLParser
r1 - Variable in class avrora.core.Instr.IMMREG_class
r1 - Variable in class avrora.core.Instr.REGIMMREG_class
r1 - Variable in class avrora.core.Instr.REGIMM_class
r1 - Variable in class avrora.core.Instr.REGREGIMM_class
r1 - Variable in class avrora.core.Instr.REGREG_class
r1 - Variable in class avrora.core.Instr.REG_class
r2 - Variable in class avrora.core.Instr.REGIMMREG_class
r2 - Variable in class avrora.core.Instr.REGREGIMM_class
r2 - Variable in class avrora.core.Instr.REGREG_class
radio - Variable in class avrora.sim.platform.Mica2
radio - Variable in class avrora.sim.radio.freespace.Distance
radioChannel - Variable in class avrora.sim.radio.SimpleAir
radioPrinter - Variable in class avrora.sim.radio.CC1000Radio
radios - Variable in class avrora.sim.radio.SimpleAir
radios - Variable in class avrora.sim.radio.freespace.FreeSpaceAir
ramSize - Variable in class avrora.sim.util.MemoryMatrixProfiler
  The `ramSize` field stores the maximum RAM address that should be recorded.
ramsize - Variable in class avrora.monitors.MemoryMonitor.Monitor
random - Variable in class avrora.sim.Simulation
random - Variable in class avrora.sim.platform.sensors.RandomSensorData
rawModule - Variable in class avrora.syntax.objdump.ObjDumpParser
rcount - Variable in class avrora.sim.util.MemoryCounter
  The `rcount` field stores the number of reads encountered for this memory location.
rcount - Variable in class avrora.sim.util.MemoryMatrixProfiler
  The `rcount` field stores a two dimensional array that records the read count for each memory location for each instruction.
rcount - Variable in class avrora.sim.util.MemoryProfiler
read(String[]) - Method in class avrora.Defaults.AutoProgramReader
read(String[]) - Method in class avrora.core.ProgramReader
  The `read()` method will read a program in and produce a simplified format.
read() - Method in interface avrora.sim.ActiveRegister
  The `read()` method reads the 8-bit value of the IO register as a byte.
read() - Method in class avrora.sim.ProbedActiveRegister
  The `read()` method reads the 8-bit value of the IO register as a byte.
read() - Method in class avrora.sim.RWRegister
  The `read()` method reads the 8-bit value of the IO register as a byte.
read(int) - Method in class avrora.sim.Segment
  The `read()` method of the segment reads a byte from a location in the segment, firing any watches on the address before and after the read.
read() - Method in class avrora.sim.mcu.ATMegaFamily.PinRegister
read() - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
read() - Method in interface avrora.sim.mcu.Microcontroller.Pin.Input
  The `read()` method is called by the simulator when the program attempts to read the level of the pin.
read() - Method in class avrora.sim.mcu.RegisterSet.MultiFieldRegister
read() - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
read() - Method in class avrora.sim.mcu.Timer16Bit.OCRnxPairedRegister
read() - Method in class avrora.sim.mcu.Timer16Bit.OCRnxTempHighRegister
read() - Method in class avrora.sim.mcu.Timer16Bit.PairedRegister
read() - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
read() - Method in class avrora.sim.mcu.USART.ControlRegisterA
read() - Method in class avrora.sim.mcu.USART.DataRegister
read() - Method in class avrora.sim.platform.ExternalFlash.PD2Input
read() - Method in class avrora.sim.radio.CC1000Radio.LockRegister
read() - Method in class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAInput
read(long, int) - Method in class avrora.sim.radio.Channel
  The `read()` method reads the value of the channel at the current time, going back by the number of bits.
read(String[]) - Method in class avrora.syntax.atmel.AtmelProgramReader
  The `read()` method takes the command line arguments passed to main and interprets it as a list of filenames to load.
read(String[]) - Method in class avrora.syntax.gas.GASProgramReader
  The `read()` method accepts a list of filenames as strings, loads them, resolves symbols, and produces a simplified program.
read(String[]) - Method in class avrora.syntax.objdump.ObjDump2ProgramReader
  The `read()` method takes the command line arguments passed to main and interprets it as a list of filenames to load.
read(String[]) - Method in class avrora.syntax.objdump.ObjDumpProgramReader
  The `read()` method takes the command line arguments passed to main and interprets it as a list of filenames to load.
read16(RWRegister, RWRegister) - Static method in class avrora.sim.mcu.AtmelInternalDevice
  Helper function to get a 16 bit value from a pair of registers.
readBit(int) - Method in interface avrora.sim.ActiveRegister
  The `readBit()` method reads a single bit from the IO register.
readBit(int) - Method in class avrora.sim.ProbedActiveRegister
  The `readBit()` method reads a single bit from the IO register.
readBit(int) - Method in class avrora.sim.RWRegister
  The `readBit()` method reads a single bit from the IO register.
readBit(int) - Method in class avrora.sim.mcu.ATMegaFamily.PinRegister
readBit(int) - Method in class avrora.sim.mcu.RegisterSet.MultiFieldRegister
readBit(int) - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
readBit(int) - Method in class avrora.sim.mcu.Timer16Bit.OCRnxPairedRegister
readBit(int) - Method in class avrora.sim.mcu.Timer16Bit.OCRnxTempHighRegister
readBit(int) - Method in class avrora.sim.mcu.Timer16Bit.PairedRegister
readBit(int) - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
readBit(int) - Method in class avrora.sim.mcu.USART.ControlRegisterA
readBit(int) - Method in class avrora.sim.mcu.USART.DataRegister
readBuffer() - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
readBuffer() - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
readChannel(Radio) - Method in interface avrora.sim.radio.RadioAir
  The `readChannel()` method reads the value of the channel at the current time so that the last 8 bits transmitted (where the bits are 0 if there are no transmissions) are returned.
readChannel(Radio) - Method in class avrora.sim.radio.SimpleAir
  The `readChannel()` method reads the value of the channel at the current time so that the last 8 bits transmitted (where the bits are 0 if there are no transmissions) are returned.
readChannel(Radio) - Method in class avrora.sim.radio.freespace.FreeSpaceAir
readChannel() - Method in class avrora.sim.radio.freespace.LocalAirImpl
readChar() - Method in class avrora.core.isdl.parser.SimpleCharStream
readChar() - Method in class avrora.syntax.atmel.SimpleCharStream
readChar() - Method in class avrora.syntax.gas.SimpleCharStream
readChar() - Method in class avrora.syntax.objdump.SimpleCharStream
readChar() - Method in class avrora.test.probes.SimpleCharStream
readDecimalString(CharacterIterator, int) - Static method in class avrora.util.StringUtil
readDecimalValue(CharacterIterator, int) - Static method in class avrora.util.StringUtil
readDotIdentifier(CharacterIterator) - Static method in class avrora.util.StringUtil
readElement(int) - Method in class avrora.stack.isea.ISEAbstractState
readError(int) - Method in class avrora.sim.BaseInterpreter.ErrorReporter
readError(int) - Method in interface avrora.sim.Segment.ErrorReporter
readHexValue(CharacterIterator, int) - Static method in class avrora.util.StringUtil
readIORegister(int) - Method in class avrora.stack.isea.ISEInterpreter
readIORegister(int) - Method in class avrora.stack.isea.ISEState
readIdentifier(CharacterIterator) - Static method in class avrora.util.StringUtil
readInstr(int) - Method in class avrora.core.Program
  The `readInstr()` method reads an instruction from the specified address in the program.
readInstr(int) - Method in class avrora.sim.CodeSegment
  The `readInstr()` method reads an Instr from the specified address in the flash.
readMeth - Variable in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
readOctalValue(CharacterIterator, int) - Static method in class avrora.util.StringUtil
readProgramByte(int) - Method in class avrora.core.Program
  The `readProgramByte()` method reads a byte into the program segment at the specified byte address.
readRegister(Register) - Method in class avrora.stack.isea.ISEInterpreter
readRegister(Register) - Method in class avrora.stack.isea.ISEState
reading() - Method in class avrora.sim.platform.sensors.RandomSensorData
reading() - Method in class avrora.sim.platform.sensors.ReplaySensorData
reading() - Method in interface avrora.sim.platform.sensors.SensorData
  The `reading()` method is called by the simulation when a new reading of the sensor is requested or needed.
reason - Variable in class avrora.test.probes.ProbeTest.Failure
receive() - Method in class avrora.sim.radio.CC1000Radio.Receiver
receiveFrame(SPI.Frame) - Method in class avrora.sim.mcu.SPI
receiveFrame(SPI.Frame) - Method in interface avrora.sim.mcu.SPIDevice
  Receive a frame.
receiveFrame(USART.Frame) - Method in class avrora.sim.mcu.USART.SerialPrinter
receiveFrame(USART.Frame) - Method in interface avrora.sim.mcu.USART.USARTDevice
  Receive a frame.
receiveFrame(USART.Frame) - Method in class avrora.sim.mcu.USART
receiveFrame(USART.Frame) - Method in class avrora.sim.platform.LCDScreen
  The `receiveFrame()` method receives a frame from the USART that this device is connected to.
receiveFrame(USART.Frame) - Method in class avrora.sim.platform.SerialForwarder
receiveFrame(SPI.Frame) - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
  `receiveFrame` receives an `SPIFrame` from a connected device.
receiver - Variable in class avrora.sim.radio.CC1000Radio
recomputeMaxDistrib(int) - Method in class avrora.util.profiling.Distribution
  Resize the occurrence table with a new maximum value.
recomputeMinDistrib(int) - Method in class avrora.util.profiling.Distribution
  Resize the occurences table with the given new minimum.
record(int) - Method in class avrora.util.profiling.Distribution
  Record the next value and update internal state.
record(int) - Method in class avrora.util.profiling.MinMaxMean
  Update the statistical data for the next input value.
recordEvent(String) - Method in class avrora.test.probes.ProbeTest
recordNumber(int) - Method in class avrora.gui.GraphNumbers
  This function is called by fire methods inside a monitor.
recordReturnSummary(int, ISEState) - Method in class avrora.stack.isea.ISEAnalyzer
recordReturnSummary(int, ISEState) - Method in interface avrora.stack.isea.ISEInterpreter.SummaryCache
reg0 - Variable in class avrora.sim.radio.CC1000Radio.FrequencyRegister
reg0 - Variable in class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister
reg1 - Variable in class avrora.sim.radio.CC1000Radio.FrequencyRegister
reg1 - Variable in class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister
reg2 - Variable in class avrora.sim.radio.CC1000Radio.FrequencyRegister
register - Variable in class avrora.core.Instr.InvalidRegister
  The `register` field records the offending register that was found not to be in the expected register set.
register(ProfilingData) - Static method in class avrora.util.profiling.ProfilingDatabase
  Register a ProfilingData object
registerCount(String, int) - Method in class avrora.util.profiling.Proportion
  Register an integer count with this proportion object and return a Counter object.
registerDataItem(DataItem) - Method in class avrora.util.profiling.Database
  Register a data item into this database.
registerDatabase(Database) - Static method in class avrora.util.profiling.Databank
  Register a database with the databank
registerInternalNotification(InterruptTable.Notification, int) - Method in class avrora.sim.InterruptTable
  The `registerInternalNotification()` method is used by devices that require notifications when their interrupt numbers are either forced or invoked.
registerVisitor(DatabaseVisitor) - Static method in class avrora.util.profiling.Databank
  Register a database with the databank
registers - Variable in class avrora.sim.BaseInterpreter
registers - Variable in class avrora.sim.mcu.AtmelMicrocontroller
registers - Variable in class avrora.sim.mcu.RegisterSet
registers - Variable in class avrora.sim.radio.CC1000Radio
relative(int) - Method in class avrora.stack.isea.ISEInterpreter
remove(String) - Method in class avrora.core.isdl.gen.ConstantPropagator.ConstantEnvironment
remove() - Method in class avrora.gui.SingleNodeMonitor.SingleNodePanel
remove(Simulation, List) - Method in class avrora.gui.SingleNodeMonitor
  You can multiple remove nodes from a monitor using this function
remove() - Method in class avrora.gui.VisualStackMonitor.SPMon
remove(Simulation, List) - Method in interface avrora.sim.Simulation.Monitor
remove() - Method in class avrora.sim.Simulation.Node
  The `remove()`method is called on a node when it is being removed from the simulation.``
remove() - Method in class avrora.sim.types.SensorSimulation.SensorNode
  The `remove()` method removes this node from the simulation.
remove(Object) - Method in class avrora.sim.util.TransactionalList
  The `remove` method removes a probe from the multicast set.
removeAllElements() - Method in class avrora.gui.GraphEvents.MyVector
removeEvent(Simulator.Event) - Method in class avrora.sim.Simulator
  The `removeEvent()` method removes an event from the event queue of the simulator.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.Clock
  The `removeEvent()` method removes an event from the event queue of the clock.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.ClockPrescaler
  The `removeEvent()` method removes an event from the event queue of the clock.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.DeltaQueue
  The `remove` method removes all occurrences of the specified event within the delta queue.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.DerivedClock
  The `removeEvent()` method removes an event from the event queue of the clock.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.MainClock
  The `removeEvent()` method removes an event from the event queue of the clock.
removeEvent(Simulator.Event) - Method in class avrora.sim.clock.SystemClock
  The `removeEvent()` method removes an event from the event queue of the clock.
removeIORWatch(Simulator.IORWatch, int) - Method in class avrora.sim.BaseInterpreter
  The `removeIORWatch()` method is used internally to remove a watch on an IO register.
removeIORWatch(Simulator.IORWatch, int) - Method in class avrora.sim.Simulator
  The `removeIORWatch()` removes an IO register watch from the given register.
removeInterruptProbe(Simulator.InterruptProbe, int) - Method in class avrora.sim.Simulator
  The `removeInterruptProbe()` method removes an interrupt probe from an interrupt.
removeMonitor(Simulation.Monitor) - Method in class avrora.sim.Simulation.Node
  The `removeMonitor()` method is called by a Monitor when it removes itself from this node.
removeMonitorPanel(MonitorPanel) - Method in class avrora.gui.AvroraGui
  This will remove a visual monitor panel from the tabbed pane.
removeNeighbor(LocalAirImpl) - Method in class avrora.sim.radio.freespace.LocalAirImpl
  remove a node
removeNode(int) - Method in class avrora.sim.Simulation
  The `removeNode()` method removes a node from this simulation.
removeNode(Simulation.Node) - Method in class avrora.sim.clock.IntervalSynchronizer
  The `removeNode()` method removes a node from this synchronization group, and wakes any nodes that might be waiting on it.
removeNode(Simulation.Node) - Method in class avrora.sim.clock.StepSynchronizer
  The `removeNode()` method removes a node from this synchronization group, and wakes any nodes that might be waiting on it.
removeNode(Simulation.Node) - Method in class avrora.sim.clock.Synchronizer
  The `removeNode()` method removes a node from this synchronization group, and wakes any nodes that might be waiting on it.
removeNode(Simulation.Node) - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `removeNode()` method removes a node from this synchronization group, and wakes any nodes that might be waiting on it.
removeProbe(Simulator.Probe, int) - Method in class avrora.sim.BaseInterpreter
  The `removeProbe()` method is used internally to remove a probe from a particular instruction.
removeProbe(Simulator.Probe) - Method in class avrora.sim.BaseInterpreter
  The `removeProbe()` method removes a probe from the global probe table (the probes executed before and after every instruction).
removeProbe(int, Simulator.Probe) - Method in class avrora.sim.CodeSegment
  The `removeProbe()` method removes a probe from a particular instruction in the program.
removeProbe(FiniteStateMachine.Probe) - Method in class avrora.sim.FiniteStateMachine
  The `removeProbe()` method removes a probe that has been inserted for all state transitions.
removeProbe(FiniteStateMachine.Probe, int) - Method in class avrora.sim.FiniteStateMachine
  The `removeProbe()` method removes a probe that has been inserted for particular state transitions.
removeProbe(Simulator.InterruptProbe, int) - Method in class avrora.sim.InterruptTable
  The `removeProbe()` method removes a probe from an interrupt.
removeProbe(Simulator.InterruptProbe) - Method in class avrora.sim.InterruptTable
  The `removeProbe()` method removes a global probe from all of the interrupts.
removeProbe(Simulator.Probe) - Method in class avrora.sim.Simulator
  The `removeProbe()` method removes a probe from the global probe table (the probes executed before and after every instruction).
removeProbe(Simulator.Probe, int) - Method in class avrora.sim.Simulator
  The `removeProbe()` method removes a probe from the instruction at the specified the address.
removeProbe(Radio.RadioProbe) - Method in class avrora.sim.radio.CC1000Radio
  The `removeProbe()` method removes a probe on this radio.
removeProbe(Radio.RadioProbe) - Method in interface avrora.sim.radio.Radio
  The `removeProbe()` method removes a probe on this radio.
removeRadio(Radio) - Method in interface avrora.sim.radio.RadioAir
  The `removeRadio()` method removes a radio from this radio model.
removeRadio(Radio) - Method in class avrora.sim.radio.SimpleAir
  The `removeRadio()` method removes a radio from this radio model.
removeRadio(Radio) - Method in class avrora.sim.radio.freespace.FreeSpaceAir
  remove radio
removeSelectedNodes() - Method in class avrora.gui.ManageTopology
  Ostensibly the user has selected nodes in the table for the Simple Air Module.
removeWatch(Simulator.Watch, int) - Method in class avrora.sim.BaseInterpreter
  The `removeWatch()` method is used internally to remove a watch from a particular memory location.
removeWatch(int, Simulator.Watch) - Method in class avrora.sim.Segment
  The `removeWatch()` removes a watch on a particular memory location.
removeWatch(Simulator.Watch, int) - Method in class avrora.sim.Simulator
  The `removeWatch()` method removes a given watch from the memory location.
removed - Variable in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
replaceInstr(int, Instr) - Method in class avrora.sim.CodeSegment
  The `replaceInstr()` method is used internally to update an instruction in the flash segment without losing all of its attached instrumentation (i.e. probes and watches).
report() - Method in class avrora.Avrora.Error
report() - Method in class avrora.Avrora.InternalError
report() - Method in class avrora.Avrora.Unexpected
report() - Method in interface avrora.gui.VisualMonitor
  The `report()` method is called after the simulation is complete.
report() - Method in class avrora.gui.VisualRadioMonitor.VisualMonitor
  The `report()` method generates a textual report after the simulation is complete.
report() - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
  The `report()` method generates a textual report after the simulation is complete.
report() - Method in class avrora.monitors.EnergyMonitor.Monitor
  implemenation of report of Monitor class.
report() - Method in class avrora.monitors.EnergyMonitorLog.Monitor
  implemenation of report of Monitor class.
report() - Method in class avrora.monitors.EnergyProfiler.Monitor
  The `report()` method generates a textual report after the simulation is complete.
report() - Method in class avrora.monitors.GDBServer.GDBMonitor
report() - Method in class avrora.monitors.MemoryMonitor.Monitor
report() - Method in interface avrora.monitors.Monitor
  The `report()` method is called after the simulation is complete.
report() - Method in class avrora.monitors.ProfileMonitor.Monitor
report() - Method in class avrora.monitors.SerialMonitor.Monitor
report() - Method in class avrora.monitors.SimPerfMonitor.Monitor
report() - Method in class avrora.monitors.SleepMonitor.Monitor
report() - Method in class avrora.monitors.StackMonitor.Monitor
  The `report()` method generates a textual report after the simulation is complete.
report() - Method in class avrora.monitors.TraceMonitor.Monitor
  The `report()` method generates a textual report for the profiling information gathered from the execution of the program.
report() - Method in class avrora.monitors.TripTimeMonitor.PointToPointMon
report() - Method in class avrora.stack.Analyzer
  The `report()` method generates a textual report after the analysis has been completed.
report() - Method in class avrora.syntax.SimplifierError
reportData() - Static method in class avrora.util.profiling.ProfilingDatabase
  Generate report of the profiling statistics.
reportMonitors(Simulation) - Method in class avrora.actions.SimulateAction
reportProportion(String, long, long, String) - Static method in class avrora.util.TermUtil
  The `reportProportion()` method is a simply utility to print out a quantity's name (such as "Number of instructions executed", the value (such as 2002), and the units (such as cycles) in a colorized and standardized way.
reportQuantity(String, long, String) - Static method in class avrora.util.TermUtil
  The `reportQuantity()` method is a simply utility to print out a quantity's name (such as "Number of instructions executed", the value (such as 2002), and the units (such as cycles) in a colorized and standardized way.
reportQuantity(String, float, String) - Static method in class avrora.util.TermUtil
  The `reportQuantity()` method is a simply utility to print out a quantity's name (such as "Number of instructions executed", the value (such as 2002), and the units (such as cycles) in a colorized and standardized way.
reportQuantity(String, String, String) - Static method in class avrora.util.TermUtil
  The `reportQuantity()` method is a simply utility to print out a quantity's name (such as "Number of instructions executed", the value (such as 2002), and the units (such as cycles) in a colorized and standardized way.
reportTime(Simulation, long) - Method in class avrora.actions.SimulateAction
reserve - Static variable in class avrora.stack.Analyzer
reserveBytes(Expr, Expr) - Method in class avrora.syntax.Module
reset() - Method in class avrora.sim.clock.ClockPrescaler
  The `reset()` method resets the internal clock prescaler to zero.
reset() - Method in class avrora.sim.radio.CC1000Radio.RadioRegister
reset() - Method in class avrora.sim.util.SequenceProbe
  The `reset()` method simply resets the nesting level of the sequence probe, as if it had exited from all nested entries into the region.
reset() - Method in class avrora.util.profiling.Counter
resetBuffer() - Method in class avrora.sim.mcu.ReprogrammableCodeSegment
  The `resetBuffer()` method resets the temporary buffer used for the SPM instruction to its default value.
resume() - Method in class avrora.sim.Simulation
  The `resume()` method resumes the simulation after it has been paused.
ret - Variable in class avrora.core.isdl.SubroutineDecl
ret(MutableState) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `ret()` method is called by the abstract interpreter when it encounters a return within the program.
ret(MutableState) - Method in interface avrora.stack.AnalyzerPolicy
  The `ret()` method is called by the abstract interpreter when it encounters a return within the program.
retCount - Variable in class avrora.stack.Analyzer
rethrow() - Method in class avrora.Avrora.Unexpected
reti(MutableState) - Method in class avrora.stack.Analyzer.ContextSensitivePolicy
  The `reti()` method is called by the abstract interpreter when it encounters a return from an interrupt within the program.
reti(MutableState) - Method in interface avrora.stack.AnalyzerPolicy
  The `reti()` method is called by the abstract interpreter when it encounters a return from an interrupt within the program.
retiCount - Variable in class avrora.stack.Analyzer
returnState - Variable in class avrora.stack.isea.ISEInterpreter
returnSummaries - Variable in class avrora.stack.isea.ISEAnalyzer
reverseBits(byte) - Static method in class avrora.util.Arithmetic
reverseMap - Variable in class avrora.core.LabelMapping
right - Variable in class avrora.core.isdl.ast.Arith.BinOp
  The `left` field stores a reference to the expression that is the right operand of the binary operation.
right - Variable in class avrora.core.isdl.ast.Logical.BinOp
  The `left` field stores a reference to the expression that is the right operand of the binary operation.
right - Variable in class avrora.syntax.Expr.BinOp
  The `right` field records an expression that represents the operand on the right side of the operator.
right - Variable in class avrora.syntax.SyntacticOperand
rightJustify(long, int) - Static method in class avrora.util.StringUtil
  The `rightJustify()` method pads a string to a specified length by adding spaces on the left, thus justifying the string to the right margin.
rightJustify(float, int) - Static method in class avrora.util.StringUtil
  The `rightJustify()` method pads a string to a specified length by adding spaces on the left, thus justifying the string to the right margin.
rightJustify(String, int) - Static method in class avrora.util.StringUtil
  The `rightJustify()` method pads a string to a specified length by adding spaces on the left, thus justifying the string to the right margin.
run(String[]) - Method in class avrora.actions.Action
  The `run()` method is called by the main class and is passed the remaining command line arguments after options have been stripped out.
run(String[]) - Method in class avrora.actions.AnalyzeStackAction
  The `run()` method runs the stack analysis by loading the program from the command line options specified, creating an instance of the `Analyzer` class, and running the analysis.
run(String[]) - Method in class avrora.actions.CFGAction
  The `run()` method starts the control flow graph utility.
run(String[]) - Method in class avrora.actions.DBBCAction
  The `run()` method starts the DBBC test with the given program.
run(String[]) - Method in class avrora.actions.DisassembleAction
  The `run()` method executes the action.
run(String[]) - Method in class avrora.actions.GUIAction
  The `run()` method is called by the main classand starts the GUI.
run(String[]) - Method in class avrora.actions.ISDLAction
  The `run()` method executes the ISDL processor action.
run(String[]) - Method in class avrora.actions.ISEAAction
run(String[]) - Method in class avrora.actions.SimulateAction
  The `run()` method is called by the main class.
run(String[]) - Method in class avrora.actions.TestAction
  The `run()` method starts the test harness and begins processing test cases.
run() - Method in class avrora.gui.AvroraGui.PaintThread
run() - Method in class avrora.sim.SimulatorThread
  The `run()` method begins the simulation, calling the `start()` method of the `Simulator` instance associated with this thread.
run() - Method in class avrora.sim.clock.StepSynchronizer.RunThread
run() - Method in class avrora.stack.Analyzer.MonitorThread
  The `run()` method simply loops while the analysis is running.
run() - Method in class avrora.stack.Analyzer
  The `run()` method begins the analysis.
run() - Method in class avrora.stack.isea.ISEInterpreter
run(String[]) - Method in class avrora.syntax.objdump.ODPPAction
run() - Method in class avrora.test.TestCase.Malformed
run() - Method in class avrora.test.TestCase
run(Simulator) - Method in class avrora.test.probes.ProbeTest
run(DeltaQueue) - Method in class avrora.test.probes.ProbeTest
runLoop() - Method in class avrora.sim.BaseInterpreter
runLoop() - Method in class avrora.sim.GenInterpreter
runLoop() - Method in class avrora.sim.clock.StepSynchronizer.RunThread
runTests(String[]) - Method in class avrora.test.AutomatedTester
  The `runTests()` method runs the testing framework on each of the specified filenames.
running - Variable in class avrora.sim.Simulation
running - Static variable in class avrora.stack.Analyzer

## S

S - Variable in class avrora.sim.BaseInterpreter
SBC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBC - Static variable in interface avrora.syntax.gas.GASParserConstants
SBC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBCI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBCI - Static variable in interface avrora.syntax.gas.GASParserConstants
SBCI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBI - Static variable in interface avrora.syntax.gas.GASParserConstants
SBI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBIC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBIC - Static variable in interface avrora.syntax.gas.GASParserConstants
SBIC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBIS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBIS - Static variable in interface avrora.syntax.gas.GASParserConstants
SBIS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBIW - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBIW - Static variable in interface avrora.syntax.gas.GASParserConstants
SBIW - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBR - Static variable in interface avrora.syntax.gas.GASParserConstants
SBR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBRC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBRC - Static variable in interface avrora.syntax.gas.GASParserConstants
SBRC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SBRS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SBRS - Static variable in interface avrora.syntax.gas.GASParserConstants
SBRS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SCHEDULE - Variable in class avrora.sim.Simulation
SEC - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEC - Static variable in interface avrora.syntax.gas.GASParserConstants
SEC - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SECONDS - Variable in class avrora.sim.Simulation
SECONDS_PRECISION - Variable in class avrora.actions.SimAction
SECONDS_PRECISION - Static variable in class avrora.util.StringUtil
SECS - Static variable in class avrora.util.StringUtil
SECS_PER_DAY - Static variable in class avrora.util.StringUtil
SECS_PER_HOUR - Static variable in class avrora.util.StringUtil
SECS_PER_MIN - Static variable in class avrora.util.StringUtil
SECTION - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SECTIONS - Variable in class avrora.syntax.objdump.ODPPAction
SECTIONS - Variable in class avrora.syntax.objdump.ObjDumpProgramReader
SEH - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEH - Static variable in interface avrora.syntax.gas.GASParserConstants
SEH - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SEI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEI - Static variable in interface avrora.syntax.gas.GASParserConstants
SEI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SEMI - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SEMI - Static variable in interface avrora.test.probes.ProbeParserConstants
SEN - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEN - Static variable in interface avrora.syntax.gas.GASParserConstants
SEN - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SENSOR_DATA - Variable in class avrora.sim.types.SensorSimulation
SER - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SER - Static variable in interface avrora.syntax.gas.GASParserConstants
SER - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SES - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SES - Static variable in interface avrora.syntax.gas.GASParserConstants
SES - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SET - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SET - Static variable in interface avrora.syntax.gas.GASParserConstants
SET - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SEV - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEV - Static variable in interface avrora.syntax.gas.GASParserConstants
SEV - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SEZ - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SEZ - Static variable in interface avrora.syntax.gas.GASParserConstants
SEZ - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SFIOR - Static variable in interface avrora.stack.IORegisterConstants
SHIFTLEFT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SHIFTRIGHT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SHOW - Variable in class avrora.monitors.InterruptMonitor
SHOW_PATH - Variable in class avrora.actions.AnalyzeStackAction
SHOW_PATH - Static variable in class avrora.stack.Analyzer
SIMULATION - Variable in class avrora.actions.SimAction
SINGLE_LINE_COMMENT - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.gas.GASParserConstants
SINGLE_LINE_COMMENT - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SINGLE_LINE_COMMENT - Static variable in interface avrora.test.probes.ProbeParserConstants
SIZE - Static variable in interface avrora.syntax.gas.GASParserConstants
SIZE - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SKIPS - Static variable in interface avrora.syntax.gas.GASParserConstants
SLEEP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SLEEP - Static variable in interface avrora.syntax.gas.GASParserConstants
SLEEP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SPACE - Static variable in interface avrora.syntax.gas.GASParserConstants
SPCR - Static variable in interface avrora.stack.IORegisterConstants
SPDR - Static variable in interface avrora.stack.IORegisterConstants
SPECIAL_EDGE - Static variable in class avrora.stack.Analyzer
SPH - Static variable in interface avrora.stack.IORegisterConstants
SPH_reg - Variable in class avrora.sim.BaseInterpreter
SPI - class avrora.sim.mcu.SPI.
  Serial Peripheral Interface.
SPI(AtmelMicrocontroller) - Constructor for class avrora.sim.mcu.SPI
SPI.Frame - class avrora.sim.mcu.SPI.Frame.
  A single byte data frame for the SPI.
SPI.Frame(byte) - Constructor for class avrora.sim.mcu.SPI.Frame
SPI.SPCRReg - class avrora.sim.mcu.SPI.SPCRReg.
  SPI control register.
SPI.SPCRReg() - Constructor for class avrora.sim.mcu.SPI.SPCRReg
SPI.TransmitReceive - class avrora.sim.mcu.SPI.TransmitReceive.
  The SPI transfer event.
SPI.TransmitReceive() - Constructor for class avrora.sim.mcu.SPI.TransmitReceive
SPIDevice - interface avrora.sim.mcu.SPIDevice.
  Interface for devices that can connect to the SPI.
SPL - Static variable in interface avrora.stack.IORegisterConstants
SPL_reg - Variable in class avrora.sim.BaseInterpreter
SPM - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SPM - Static variable in interface avrora.syntax.gas.GASParserConstants
SPM - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SPMCSR - Static variable in interface avrora.stack.IORegisterConstants
SPSR - Static variable in interface avrora.stack.IORegisterConstants
SQUOTE - Static variable in class avrora.util.StringUtil
SREG - Variable in class avrora.sim.BaseInterpreter
SREG - Static variable in interface avrora.stack.IORegisterConstants
SREG - Static variable in class avrora.stack.isea.ISEValue
SREG_C - Static variable in class avrora.sim.BaseInterpreter
SREG_C - Static variable in interface avrora.stack.IORegisterConstants
SREG_H - Static variable in class avrora.sim.BaseInterpreter
SREG_H - Static variable in interface avrora.stack.IORegisterConstants
SREG_I - Static variable in class avrora.sim.BaseInterpreter
SREG_I - Static variable in interface avrora.stack.IORegisterConstants
SREG_N - Static variable in class avrora.sim.BaseInterpreter
SREG_N - Static variable in interface avrora.stack.IORegisterConstants
SREG_NUM - Static variable in class avrora.stack.isea.ISEState
SREG_OFF - Static variable in class avrora.stack.isea.ISEState
SREG_S - Static variable in class avrora.sim.BaseInterpreter
SREG_S - Static variable in interface avrora.stack.IORegisterConstants
SREG_T - Static variable in class avrora.sim.BaseInterpreter
SREG_T - Static variable in interface avrora.stack.IORegisterConstants
SREG_V - Static variable in class avrora.sim.BaseInterpreter
SREG_V - Static variable in interface avrora.stack.IORegisterConstants
SREG_Z - Static variable in class avrora.sim.BaseInterpreter
SREG_Z - Static variable in interface avrora.stack.IORegisterConstants
SREG_reg - Variable in class avrora.sim.BaseInterpreter
ST - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
ST - Static variable in interface avrora.syntax.gas.GASParserConstants
ST - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
STACKTRACES - Static variable in class avrora.Avrora.Error
STAGGER_START - Variable in class avrora.sim.types.SensorSimulation
START - Variable in class avrora.actions.ISEAAction
START - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
STATUS - Static variable in class avrora.Main
STD - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
STD - Static variable in interface avrora.syntax.gas.GASParserConstants
STD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
STDERR - Static variable in class avrora.util.Printer
STDOUT - Static variable in class avrora.util.Printer
STRING_LITERAL - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
STRING_LITERAL - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
STRING_LITERAL - Static variable in interface avrora.syntax.gas.GASParserConstants
STRING_LITERAL - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
STS - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
STS - Static variable in interface avrora.syntax.gas.GASParserConstants
STS - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SUB - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SUB - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SUB - Static variable in interface avrora.syntax.gas.GASParserConstants
SUB - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SUBI - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SUBI - Static variable in interface avrora.syntax.gas.GASParserConstants
SUBI - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SUBROUTINE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
SWAP - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
SWAP - Static variable in interface avrora.syntax.gas.GASParserConstants
SWAP - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
SYNTAX - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
Section() - Method in class avrora.syntax.objdump.ObjDumpParser
SectionDecl() - Method in class avrora.syntax.objdump.ObjDumpParser
SectionFile - class avrora.util.SectionFile.
  The `SectionFile` class represents a file that can be used to for source code generation, etc, where a template file has a section of text that needs to be generated, and the rest of the file is not altered.
SectionFile(String, String) - Constructor for class avrora.util.SectionFile
SegDirective() - Method in class avrora.syntax.atmel.AtmelParser
SegDirective() - Method in class avrora.syntax.gas.GASParser
Segment - class avrora.sim.Segment.
  The `Segment` class represents a segment of byte-addressable memory that supports probing.
Segment(String, int, byte, BaseInterpreter, Segment.ErrorReporter) - Constructor for class avrora.sim.Segment
  The constructor for the `Segment` class creates an object that represents this segment.
Segment.AddressOutOfBoundsException - error avrora.sim.Segment.AddressOutOfBoundsException.
  The `AddressOutOfBoundsException` class represents an error when using the `get()` and `set()` methods where the user specifies an address that is out of the bounds of the segment.
Segment.AddressOutOfBoundsException(int) - Constructor for class avrora.sim.Segment.AddressOutOfBoundsException
Segment.ErrorReporter - interface avrora.sim.Segment.ErrorReporter.
  The `ErrorReporter` class is used to intercept errors caused by trying to either read or write outside the bounds of this segment.
Segment.Sharer - interface avrora.sim.Segment.Sharer.
  The `Sharer` interface must be implemented by a class that needs to share the underlying data representation for efficiency reasons.
Sensor - class avrora.sim.platform.sensors.Sensor.
  The `Sensor` class represents a sensor device that contains a reference to the `SensorData` instance feeding data to the device.
Sensor() - Constructor for class avrora.sim.platform.sensors.Sensor
SensorBoard - class avrora.sim.platform.sensors.SensorBoard.
  This class is a placeholder for tracking the energ consumption of the sensor board.
SensorBoard(Simulator) - Constructor for class avrora.sim.platform.sensors.SensorBoard
SensorData - interface avrora.sim.platform.sensors.SensorData.
  The `SensorData` interface represents a source of sensor data for the simulation.
SensorSimulation - class avrora.sim.types.SensorSimulation.
  The `SensorSimulation` class represents a simulaion type where multiple sensor nodes, each with a microcontroller, sensors, and a radio, are run in parallel.
SensorSimulation() - Constructor for class avrora.sim.types.SensorSimulation
SensorSimulation.SensorNode - class avrora.sim.types.SensorSimulation.SensorNode.
  The `SensorNode` class extends the `Node` class of a simulation by adding a reference to the radio device as well as sensor data input.
SequenceProbe - class avrora.sim.util.SequenceProbe.
  The `SequenceProbe` is a probe composer that allows a probe to be fired for every instruction executed between a specified entrypoint and a specified exit point.
SequenceProbe(Simulator.Probe, int, int) - Constructor for class avrora.sim.util.SequenceProbe
  The constructor for the `SequenceProbe` class simply stores its arguments into the corresponding public final fields in this object, leaving the probe in a state where it is ready to be inserted into a simulator.
Seres - class avrora.sim.platform.Seres.
  The `Seres` class is an implementation of the `Platform` interface that represents both a specific microcontroller and the devices connected to it.
Seres.Factory - class avrora.sim.platform.Seres.Factory.
Seres.Factory() - Constructor for class avrora.sim.platform.Seres.Factory
SerialForwarder - class avrora.sim.platform.SerialForwarder.
  The `SerialForwarder` class implements a serial forwarder that takes traffic to and from a socket and directs it into the UART chip of a simulated device.
SerialForwarder(USART, int) - Constructor for class avrora.sim.platform.SerialForwarder
SerialMonitor - class avrora.monitors.SerialMonitor.
  The `SerialMonitor` class is a monitor that that is capable of setting up a virtual usart connection to the pc.
SerialMonitor() - Constructor for class avrora.monitors.SerialMonitor
  The constructor for the `SerialMonitor` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
SerialMonitor.Monitor - class avrora.monitors.SerialMonitor.Monitor.
  The `SerialMonitor` class is a monitor that connects the USART of a node to a socket that allows data to be read and written from the simulation.
ShiftExpr() - Method in class avrora.syntax.atmel.AtmelParser
ShiftExpr() - Method in class avrora.syntax.gas.GASParser
Shift_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
SimAction - class avrora.actions.SimAction.
  The `SimAction` is an abstract class that collects many of the options common to single node and multiple-node simulations into one place.
SimAction(String) - Constructor for class avrora.actions.SimAction
SimAction.BreakPointException - exception avrora.actions.SimAction.BreakPointException.
  The `BreakPointException` is an exception that is thrown by the simulator before it executes an instruction which has a breakpoint.
SimAction.BreakPointException(int, State) - Constructor for class avrora.actions.SimAction.BreakPointException
SimAction.TimeoutException - exception avrora.actions.SimAction.TimeoutException.
  The `TimeoutException` is thrown by the simulator when a timeout reaches zero.
SimAction.TimeoutException(int, State, long, String) - Constructor for class avrora.actions.SimAction.TimeoutException
SimMenuBar - class avrora.gui.SimMenuBar.
  This simple class handles the top level menu bar.
SimMenuBar() - Constructor for class avrora.gui.SimMenuBar
SimPerfMonitor - class avrora.monitors.SimPerfMonitor.
  This monitor measures the instantaneous performance of the simulator by inserting events into the queue at regular intervals and recording the elapsed (wall clock) time used for simulation.
SimPerfMonitor() - Constructor for class avrora.monitors.SimPerfMonitor
  The constructor for the `ProfileMonitor` class creates a factory that is capable of producing profile monitors for each simulator passed.
SimPerfMonitor.Monitor - class avrora.monitors.SimPerfMonitor.Monitor.
SimTimeEvents - class avrora.gui.SimTimeEvents.
  In order to speed up and slow down the simulator, we insert events into the simulator queue which trigger the time changes.
SimTimeEvents(SimpleAir) - Constructor for class avrora.gui.SimTimeEvents
SimTimeEvents.PauseEvent - class avrora.gui.SimTimeEvents.PauseEvent.
  An instance of this class can be inserted into the sim it will pause the sim until `unpause()` is called.
SimTimeEvents.PauseEvent() - Constructor for class avrora.gui.SimTimeEvents.PauseEvent
SimpleAir - class avrora.sim.radio.SimpleAir.
  Very simple implementation of radio air.
SimpleAir() - Constructor for class avrora.sim.radio.SimpleAir
SimpleAir.MeetEvent - class avrora.sim.radio.SimpleAir.MeetEvent.
SimpleAir.MeetEvent() - Constructor for class avrora.sim.radio.SimpleAir.MeetEvent
SimpleBatteryMonitor - class avrora.monitors.SimpleBatteryMonitor.
  simple battery monitors to shut down a node when an energy limit is exceeded ---- not yet implemented ----
SimpleBatteryMonitor() - Constructor for class avrora.monitors.SimpleBatteryMonitor
  Creates a new instance of BatteryMonitor
SimpleCharStream - class avrora.core.isdl.parser.SimpleCharStream.
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream(Reader, int, int) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream(Reader) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream(InputStream, int, int, int) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream(InputStream, int, int) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream(InputStream) - Constructor for class avrora.core.isdl.parser.SimpleCharStream
SimpleCharStream - class avrora.syntax.atmel.SimpleCharStream.
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream(Reader, int, int) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream(Reader) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream(InputStream, int, int, int) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream(InputStream, int, int) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream(InputStream) - Constructor for class avrora.syntax.atmel.SimpleCharStream
SimpleCharStream - class avrora.syntax.gas.SimpleCharStream.
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream(Reader, int, int) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream(Reader) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream(InputStream, int, int, int) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream(InputStream, int, int) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream(InputStream) - Constructor for class avrora.syntax.gas.SimpleCharStream
SimpleCharStream - class avrora.syntax.objdump.SimpleCharStream.
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream(Reader, int, int) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream(Reader) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream(InputStream, int, int, int) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream(InputStream, int, int) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream(InputStream) - Constructor for class avrora.syntax.objdump.SimpleCharStream
SimpleCharStream - class avrora.test.probes.SimpleCharStream.
  An implementation of interface CharStream, where the stream is assumed to contain only ASCII characters (without unicode processing).
SimpleCharStream(Reader, int, int, int) - Constructor for class avrora.test.probes.SimpleCharStream
SimpleCharStream(Reader, int, int) - Constructor for class avrora.test.probes.SimpleCharStream
SimpleCharStream(Reader) - Constructor for class avrora.test.probes.SimpleCharStream
SimpleCharStream(InputStream, int, int, int) - Constructor for class avrora.test.probes.SimpleCharStream
SimpleCharStream(InputStream, int, int) - Constructor for class avrora.test.probes.SimpleCharStream
SimpleCharStream(InputStream) - Constructor for class avrora.test.probes.SimpleCharStream
SimplifierError - error avrora.syntax.SimplifierError.
  The `SimplifierError` class represents an error in a user program, including the module contents and line and column numbers.
SimplifierError(ProgramPoint, String, String, String[]) - Constructor for class avrora.syntax.SimplifierError
SimplifierTestHarness - class avrora.test.SimplifierTestHarness.
  The `SimulatorTestHarness` implements a test harness that interfaces the `avrora.test.AutomatedTester` in order to automate testing of the AVR parser and simulator.
SimplifierTestHarness() - Constructor for class avrora.test.SimplifierTestHarness
SimulateAction - class avrora.actions.SimulateAction.
  The `SimulateAction` implements the bridge between the functionality in the `avrora.sim` package and the entrypoint to Avrora in `avrora.Main`.
SimulateAction() - Constructor for class avrora.actions.SimulateAction
Simulation - class avrora.sim.Simulation.
  The `Simulation` class represents a complete simulation, including the nodes, the programs, the radio model (if any), the environment model, for simulations of one or many nodes.
Simulation(String, String, Synchronizer) - Constructor for class avrora.sim.Simulation
  The construcotr for the `Simulation` class creates a new simulation.
Simulation.Monitor - interface avrora.sim.Simulation.Monitor.
  The `Monitor` interface represents a monitor for a simulation.
Simulation.Node - class avrora.sim.Simulation.Node.
  The `Node` class represents a node in a simulation, which has an ID and a program to be loaded onto it.
Simulation.Node(int, PlatformFactory, LoadableProgram) - Constructor for class avrora.sim.Simulation.Node
  The constructor for the `Node` class creates a representation of a new node that includes its id, a factory capable of creating a platform instance (i.e. microcontroller with attached devices) and the program to be loaded onto the node.
Simulator - class avrora.sim.Simulator.
  The `Simulator` class implements a full processor simulator for the AVR instruction set.
Simulator(int, InterpreterFactory, Microcontroller, Program) - Constructor for class avrora.sim.Simulator
  The constructor creates the internal data structures and initial state of the processor.
Simulator.ClockCycleTimeout - class avrora.sim.Simulator.ClockCycleTimeout.
  The `InstructionCountTimeout` class is a probe that simply counts down and throws an exception when the count reaches zero.
Simulator.ClockCycleTimeout(long) - Constructor for class avrora.sim.Simulator.ClockCycleTimeout
  The constructor for `InstructionCountTimeout` creates a timeout event with the specified initial value.
Simulator.Event - interface avrora.sim.Simulator.Event.
  The `Simulator.Event` interface represents an event that is fired when a timed event occurs within the simulator.
Simulator.ExceptionWatch - interface avrora.sim.Simulator.ExceptionWatch.
  The `Simulator.ExceptionWatch` interface allows for monitoring of exceptional conditions in the machine state.
Simulator.IORWatch - interface avrora.sim.Simulator.IORWatch.
  The `IORWatch` interface represents a user probe that is fired when a watchpoint detects an access to an IO register where the watch has been inserted.
Simulator.IORWatch.Empty - class avrora.sim.Simulator.IORWatch.Empty.
  The `Simulator.IORWatch.Empty` class acts as a base class with empty methods for each fireXXX() method.
Simulator.IORWatch.Empty() - Constructor for class avrora.sim.Simulator.IORWatch.Empty
Simulator.InterruptProbe - interface avrora.sim.Simulator.InterruptProbe.
  The `InterruptProbe` interface represents a programmer-defined probe that can be inserted on an interrupt.
Simulator.InterruptProbe.Empty - class avrora.sim.Simulator.InterruptProbe.Empty.
  The `Empty` class represents a default implementation of the `InterruptProbe` interface where each fireXXX() method does nothing.
Simulator.InterruptProbe.Empty() - Constructor for class avrora.sim.Simulator.InterruptProbe.Empty
Simulator.Printer - class avrora.sim.Simulator.Printer.
  The `Simulator.Printer` class is a printer that is tied to a specific `Simulator` instance.
Simulator.Probe - interface avrora.sim.Simulator.Probe.
  The `Simulator.Probe` interface represents a programmer-defined probe that can be inserted at a particular instruction in the program. or at every instruction.
Simulator.Probe.Empty - class avrora.sim.Simulator.Probe.Empty.
  The `Simulator.Probe.Empty` class is a simple base class for probes that do not implement one or more methods.
Simulator.Probe.Empty() - Constructor for class avrora.sim.Simulator.Probe.Empty
Simulator.Watch - interface avrora.sim.Simulator.Watch.
  The `Watch` interface represents a user watch that is fired when a watchpoint detects an access to an address where this watch has been inserted.
Simulator.Watch.Empty - class avrora.sim.Simulator.Watch.Empty.
  The `Simulator.Watch.Empty` class acts as a base class with empty methods for each fireXXX() method.
Simulator.Watch.Empty() - Constructor for class avrora.sim.Simulator.Watch.Empty
SimulatorTestHarness - class avrora.test.SimulatorTestHarness.
  The `SimulatorTestHarness` implements a test harness that interfaces the `avrora.test.AutomatedTester` in order to automate testing of the AVR parser and simulator.
SimulatorTestHarness() - Constructor for class avrora.test.SimulatorTestHarness
SimulatorThread - class avrora.sim.SimulatorThread.
  The `SimulatorThread` class is a thread intended to run a `Simulator` in a multiple-node simulation.
SimulatorThread(Simulation.Node) - Constructor for class avrora.sim.SimulatorThread
  The constructor for the simulator thread accepts an instance of `Simulator` as a parameter and stores it internally.
SingleNodeMonitor - class avrora.gui.SingleNodeMonitor.
  There are two types of visual monitors for the GUI.
SingleNodeMonitor(String) - Constructor for class avrora.gui.SingleNodeMonitor
  Default constuctor, will init the hash maps that store information about the monitors in this node
SingleNodeMonitor.SingleNodePanel - class avrora.gui.SingleNodeMonitor.SingleNodePanel.
SingleSimulation - class avrora.sim.types.SingleSimulation.
  The `SingleSimulation` class implements a simulation for a single node.
SingleSimulation() - Constructor for class avrora.sim.types.SingleSimulation
SingleSimulation.SingleSynchronizer - class avrora.sim.types.SingleSimulation.SingleSynchronizer.
SingleSimulation.SingleSynchronizer() - Constructor for class avrora.sim.types.SingleSimulation.SingleSynchronizer
SingleStatement(List) - Method in class avrora.core.isdl.parser.ISDLParser
SizeDirective() - Method in class avrora.syntax.gas.GASParser
SleepMonitor - class avrora.monitors.SleepMonitor.
  The `SleepMonitor` class is a monitor that tracks statistics about the sleeping patterns of programs, including the total number of cycles awake and the total number of cycles asleep during the simulation.
SleepMonitor() - Constructor for class avrora.monitors.SleepMonitor
SleepMonitor.Monitor - class avrora.monitors.SleepMonitor.Monitor.
SourceMapping - class avrora.core.SourceMapping.
  The `SourceMapping` class embodies the concept of mapping machine code level addresses and constructions in the `Program` class back to a source code program, either in assembly language (labels), or a high-level programming lagnguage like C.
SourceMapping(Program) - Constructor for class avrora.core.SourceMapping
  The constructor for the `SourceMapping` base class creates a new instance of source mapping information for the specified program.
SourceMapping.Location - class avrora.core.SourceMapping.Location.
  The `Location` class represents a location in the program; either named by a label, or an unnamed integer address.
StackMonitor - class avrora.monitors.StackMonitor.
  The `StackMonitor` class is a monitor that tracks the height of the program's stack over the execution of the simulation and reports the maximum stack of the program.
StackMonitor() - Constructor for class avrora.monitors.StackMonitor
  The constructor for the `StackMonitor` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
StackMonitor.Monitor - class avrora.monitors.StackMonitor.Monitor.
  The `Monitor` class implements a monitor for the stack height that inserts a probe after every instruction in the program and checks the stack height after each instruction is executed.
State - interface avrora.sim.State.
  The `State` class represents the state of the simulator, including the contents of registers and memory.
StateCache - class avrora.stack.StateCache.
  The `StateSpace` class represents the reachable state space as it is explored by the `Analyzer` class.
StateCache(Program) - Constructor for class avrora.stack.StateCache
  The constructor for the `StateSpace` accepts a program as a parameter.
StateCache.Set - class avrora.stack.StateCache.Set.
StateCache.Set() - Constructor for class avrora.stack.StateCache.Set
StateCache.State - class avrora.stack.StateCache.State.
  The `State` class represents an immutable state within the state space of the program.
StatePrinter - class avrora.stack.StatePrinter.
StatePrinter() - Constructor for class avrora.stack.StatePrinter
StateTransitionGraph - class avrora.stack.StateTransitionGraph.
StateTransitionGraph(Program) - Constructor for class avrora.stack.StateTransitionGraph
  The constructor for the `StateTransitionGraph` class constructs a new state transition graph, with a state cache.
StateTransitionGraph.Edge - class avrora.stack.StateTransitionGraph.Edge.
  The `Edge` inner class represents a bidirectional edge between two states.
StateTransitionGraph.EdgeList - class avrora.stack.StateTransitionGraph.EdgeList.
StateTransitionGraph.StateInfo - class avrora.stack.StateTransitionGraph.StateInfo.
  The `StateInfo` class is a representation of both the forward and backward edge list corresponding to a node in the state transition graph.
StateTransitionGraph.StateList - class avrora.stack.StateTransitionGraph.StateList.
StateUse - class avrora.core.isdl.dep.StateUse.
  The `StateUse` class represents the result of a dependency analysis of a particular instruction declaration (e.g. the ADD instruction's declaration).
StateUse() - Constructor for class avrora.core.isdl.dep.StateUse
StateUse.BitUse - class avrora.core.isdl.dep.StateUse.BitUse.
  The `BitUse` class represents the usage of a bit of some state that is used.
StateUse.GlobalUse - class avrora.core.isdl.dep.StateUse.GlobalUse.
  The `GlobalUse` class represents the usage of a globally declared state variable that is visible within the instruction specification.
StateUse.Index - class avrora.core.isdl.dep.StateUse.Index.
  The `Index` class represents a possible expr into a map (such as the register file or memory).
StateUse.Index() - Constructor for class avrora.core.isdl.dep.StateUse.Index
StateUse.Index.Constant - class avrora.core.isdl.dep.StateUse.Index.Constant.
StateUse.Index.Operand - class avrora.core.isdl.dep.StateUse.Index.Operand.
StateUse.Index.OperandPlusConstant - class avrora.core.isdl.dep.StateUse.Index.OperandPlusConstant.
StateUse.Index.UNKNOWN - class avrora.core.isdl.dep.StateUse.Index.UNKNOWN.
StateUse.Index.UNKNOWN() - Constructor for class avrora.core.isdl.dep.StateUse.Index.UNKNOWN
StateUse.MapUse - class avrora.core.isdl.dep.StateUse.MapUse.
  The `MapUse` class represents the usage of a map (i.e. a register file or memory).
Statement() - Method in class avrora.core.isdl.parser.ISDLParser
Statement() - Method in class avrora.syntax.atmel.AtmelParser
Statement() - Method in class avrora.syntax.gas.GASParser
Statement() - Method in class avrora.syntax.objdump.ObjDumpParser
Statement(ProbeTest, List) - Method in class avrora.test.probes.ProbeParser
Status - class avrora.util.Status.
  The `Status` class is a utility that allows printing of the status (or progress) of a computation, which might involve several steps.
Status() - Constructor for class avrora.util.Status
StepSynchronizer - class avrora.sim.clock.StepSynchronizer.
  The `StepSynchronizer` class is an implementation of simulator synchronization that steps each node one cycle at a time using the `Simulator.step()` method of each simulator.
StepSynchronizer(Simulator.Event) - Constructor for class avrora.sim.clock.StepSynchronizer
  The constructor for the `StepSynchronizer` class creates a new instance of this synchronizer.
StepSynchronizer.RunThread - class avrora.sim.clock.StepSynchronizer.RunThread.
  The `RunThread` class implements a thread that runs the simulation, to preserve the model that the thread interacting with the synchronizer through calls to `start()`, stop(), etc. is different than any of the threads running actual simulator code.
StepSynchronizer.RunThread() - Constructor for class avrora.sim.clock.StepSynchronizer.RunThread
Stmt - class avrora.core.isdl.ast.Stmt.
  The `Stmt` class represents a statement in the IR that expresses the computation of an instruction.
Stmt() - Constructor for class avrora.core.isdl.ast.Stmt
StmtRebuilder - interface avrora.core.isdl.ast.StmtRebuilder.
  The `StmtVisitor` interface implements the visitor pattern so that clients can visit the abstract syntax tree nodes representing statements in the program.
StmtRebuilder.DepthFirst - class avrora.core.isdl.ast.StmtRebuilder.DepthFirst.
  The `DepthFirst` class is a base implementation of the `StmtVisitor` interface that visits the tree in depth-first order.
StmtRebuilder.DepthFirst() - Constructor for class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
StmtVisitor - interface avrora.core.isdl.ast.StmtVisitor.
  The `StmtVisitor` interface implements the visitor pattern so that clients can visit the abstract syntax tree nodes representing statements in the program.
StmtVisitor.DepthFirst - class avrora.core.isdl.ast.StmtVisitor.DepthFirst.
  The `DepthFirst` class is a base implementation of the `StmtVisitor` interface that visits the tree in depth-first order.
StmtVisitor.DepthFirst() - Constructor for class avrora.core.isdl.ast.StmtVisitor.DepthFirst
StringUtil - class avrora.util.StringUtil.
  The `StringUtil` class implements several useful functions for dealing with strings such as parsing pieces of syntax, formatting, etc.
StringUtil() - Constructor for class avrora.util.StringUtil
SubcategoryItem - class avrora.util.help.SubcategoryItem.
  The `SubcategoryItem` class implements a help item that represents a subcategory in a help category.
SubcategoryItem(int, HelpCategory) - Constructor for class avrora.util.help.SubcategoryItem
  The constructor for the `SubcategoryItem` method creates a new instance that represents a help item that can be added to the end of a section in another help category.
Subroutine(Architecture) - Method in class avrora.core.isdl.parser.ISDLParser
SubroutineDecl - class avrora.core.isdl.SubroutineDecl.
  The `SubroutineDecl` class represents the declaration of a subroutine within the instruction set description.
SubroutineDecl(boolean, Token, List, Token, List) - Constructor for class avrora.core.isdl.SubroutineDecl
Substitution() - Method in class avrora.core.isdl.parser.ISDLParser
SubstitutionList() - Method in class avrora.core.isdl.parser.ISDLParser
SwitchTo(int) - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
SwitchTo(int) - Method in class avrora.syntax.atmel.AtmelParserTokenManager
SwitchTo(int) - Method in class avrora.syntax.gas.GASParserTokenManager
SwitchTo(int) - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
SwitchTo(int) - Method in class avrora.test.probes.ProbeParserTokenManager
Synchronizer - class avrora.sim.clock.Synchronizer.
  The `Synchronizer` class represents an object that controls the progress of a multi-node simulation.
Synchronizer() - Constructor for class avrora.sim.clock.Synchronizer
SyntacticOperand - class avrora.syntax.SyntacticOperand.
  The `SyntacticOperand` class is an implementation of the `avrora.core.Operand` interface that corresponds to source assembly programs.
SyntacticOperand.Expr - class avrora.syntax.SyntacticOperand.Expr.
  The `SyntacticOperand.Expr` class represents a constant expression that was specified in the source assembly as an expression.
SyntacticOperand.Expr(Expr, boolean) - Constructor for class avrora.syntax.SyntacticOperand.Expr
SyntacticOperand.Register - class avrora.syntax.SyntacticOperand.Register.
  The `SyntacticOperand.Register` class represents a register operand at the source level.
SyntacticOperand.Register(AbstractToken) - Constructor for class avrora.syntax.SyntacticOperand.Register
Syntax() - Method in class avrora.core.isdl.parser.ISDLParser
SystemClock - class avrora.sim.clock.SystemClock.
  The `SystemClock` class represents a wrapper around the system clock that measures actual wall clock time passed in simulation.
sampleRSSI(Radio) - Method in interface avrora.sim.radio.RadioAir
  The `sampleRSSI()` method is called by a radio when it wants to sample the RSSI value of the air around it at the current time.
sampleRSSI(Radio) - Method in class avrora.sim.radio.SimpleAir
  The `sampleRSSI()` method is called by a radio when it wants to sample the RSSI value of the air around it at the current time.
sampleRSSI(Radio) - Method in class avrora.sim.radio.freespace.FreeSpaceAir
  see simple air for more
sampleRSSI(long) - Method in class avrora.sim.radio.freespace.LocalAirImpl
  compute signal strength bases on @see avrora.sim.radio.SimpleAir#sampleRSSI(long) by Daniel Lee
sampleTime - Static variable in class avrora.sim.radio.freespace.LocalAirImpl
section - Variable in class avrora.syntax.objdump.RawModule
sectionMap - Variable in class avrora.syntax.objdump.RawModule
segment - Variable in class avrora.sim.InterpreterError.AddressOutOfBoundsException
segment - Variable in class avrora.syntax.Item
segment - Variable in class avrora.syntax.Module
segment_data - Variable in class avrora.sim.Segment
segment_instr - Variable in class avrora.sim.CodeSegment
  The `segment_instr` field stores a reference to an array that contains the disassembled instructions that correspond to the machine code.
segment_watches - Variable in class avrora.sim.Segment
sensorboard - Variable in class avrora.sim.platform.Mica2
set - Variable in class avrora.core.Instr.InvalidRegister
  The `set` field records the expected register set for the operand.
set(int, byte) - Method in class avrora.sim.Segment
  The `set()` method simply sets the value of a byte at a particular location in the segment.
set(int) - Method in class avrora.sim.mcu.RegisterSet.Field
set(String) - Method in class avrora.util.Option.Bool
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option.Double
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option.Interval
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option.List
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option.Long
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option.Str
  The `set()` method updates the value of the option.
set(String) - Method in class avrora.util.Option
  The `set()` method updates the value of the option.
setAddress(AbstractToken) - Method in class avrora.syntax.objdump.RawModule
setAir(RadioAir) - Method in class avrora.sim.radio.CC1000Radio
setAir(RadioAir) - Method in interface avrora.sim.radio.Radio
setAir(RadioAir) - Method in class avrora.sim.types.SensorSimulation
setBit(char, int, char) - Static method in class avrora.stack.AbstractArithmetic
  The `setBit()` method updates the specified abstract bit within the specified abstract value.
setBit(byte, int) - Static method in class avrora.util.Arithmetic
setBit(byte, int, boolean) - Static method in class avrora.util.Arithmetic
setBit(int, int, boolean) - Static method in class avrora.util.Arithmetic
setBit(long, int, boolean) - Static method in class avrora.util.Arithmetic
setBootPC(int) - Method in class avrora.sim.BaseInterpreter
  This method sets the booting address of the interpreter.
setCircularTTM(int[][], int[], int[]) - Static method in class avrora.sim.FiniteStateMachine
  The `setCircularTTM()` method builds a transition time matrix that represents a finite state machine arranged in a ring; each state can transition to one other state, wrapping around.
setCode(List) - Method in class avrora.core.isdl.CodeRegion
setCond(EncodingDecl.Cond) - Method in class avrora.core.isdl.EncodingDecl
setDebugStream(PrintStream) - Method in class avrora.core.isdl.parser.ISDLParserTokenManager
setDebugStream(PrintStream) - Method in class avrora.syntax.atmel.AtmelParserTokenManager
setDebugStream(PrintStream) - Method in class avrora.syntax.gas.GASParserTokenManager
setDebugStream(PrintStream) - Method in class avrora.syntax.objdump.ObjDumpParserTokenManager
setDebugStream(PrintStream) - Method in class avrora.test.probes.ProbeParserTokenManager
setDiagonal(int[][], int) - Static method in class avrora.sim.FiniteStateMachine
  The `setDiagonal()` method sets the diagonal of the given transition time matrix to the specified value.
setEnabled(int, boolean) - Method in class avrora.sim.BaseInterpreter
  The `setEnabled()` method is used by external devices (and mask registers) to enable and disable interrupts.
setEncodingSize(int) - Method in class avrora.core.isdl.InstrDecl
setExplored(StateCache.State) - Method in class avrora.stack.StateTransitionGraph
  The `setExplored()` method marks the given state as having been explored.
setFlag_C(char) - Method in class avrora.stack.MutableState
  The `setFlag_C()` method updates the abstract value of the C flag.
setFlag_H(char) - Method in class avrora.stack.MutableState
  The `setFlag_H()` method updates the abstract value of the H flag.
setFlag_I(char) - Method in class avrora.stack.MutableState
  The `setFlag_I()` method updates the abstract value of the I flag.
setFlag_N(char) - Method in class avrora.stack.MutableState
  The `setFlag_N()` method updates the abstract value of the N flag.
setFlag_S(char) - Method in class avrora.stack.MutableState
  The `setFlag_S()` method updates the abstract value of the S flag.
setFlag_T(char) - Method in class avrora.stack.MutableState
  The `setFlag_T()` method updates the abstract value of the T flag.
setFlag_V(char) - Method in class avrora.stack.MutableState
  The `setFlag_V()` method updates the abstract value of the V flag.
setFlag_Z(char) - Method in class avrora.stack.MutableState
  The `setFlag_Z()` method updates the abstract value of the Z flag.
setFrequency(int) - Method in class avrora.sim.radio.CC1000Radio.FrequencyRegister
setFrequencySeparation(int) - Method in class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister
setIORegisterAV(int, char) - Method in class avrora.stack.MutableState
  The `setIORegisterAV()` method writes the abstract value of an IO register.
setInterruptBase(int) - Method in class avrora.sim.BaseInterpreter
  The `setInterruptBase()` method sets the base of the interrupt table.
setName(String) - Method in class avrora.util.help.HelpCategory
  The `setName()` method is used to set the short name for this help category.
setNewDefault(String) - Method in class avrora.util.Option.Str
  The `setNewDefault()` method sets a new default value for this option.
setOperandType(OperandDecl) - Method in class avrora.core.isdl.CodeRegion.Operand
setOrigin(int) - Method in class avrora.syntax.Module.Seg
setOrigin(Expr.Constant) - Method in class avrora.syntax.Module
setOutput(PrintStream) - Static method in class avrora.util.Terminal
setOutputDir(boolean) - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
setPC(int) - Method in class avrora.stack.MutableState
  The `setPC()` method updates the concrete value of the program counter.
setParent(EncodingDecl) - Method in class avrora.core.isdl.EncodingDecl.Derived
setParentPanel(JPanel) - Method in class avrora.gui.GraphEvents
  Used in order to size thing correctly.
setPlatform(Platform) - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `setPlatform()` method sets the platform instance for this microcontroller
setPlatform(Platform) - Method in interface avrora.sim.mcu.Microcontroller
  The `setPlatform()` method sets the platform instance that contains this microcontroller.
setPosition(int) - Method in class avrora.gui.TimeScale
setPosted(int, boolean) - Method in class avrora.sim.BaseInterpreter
  The `setPosted()`method is used by external devices to post and unpost interrupts.``
setPullup(boolean) - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
setRegisterAV(Register, char) - Method in class avrora.stack.MutableState
  The `setRegisterAV()` method writes the abstract value of a register in the abstract state
setSP(int) - Method in class avrora.sim.BaseInterpreter
  The `setSP()` method updates the value of the stack pointer.
setSREG_bit(int, char) - Method in class avrora.stack.MutableState
  The `writeSREG` method updates one bit of the abstract value of the status register.
setSensorData(SensorData) - Method in class avrora.sim.platform.sensors.Sensor
  The `setSensorData()` method sets the reference to the sensor data for this sensor device.
setSourceMapping(SourceMapping) - Method in class avrora.core.Program
setStepSize(double) - Method in class avrora.gui.GraphEvents
setSynchronizer(Synchronizer) - Method in class avrora.sim.SimulatorThread
  The `setSynchronizer()` method sets the synchronizer for this thread.
setType(int) - Method in class avrora.stack.StateCache.State
setUpdater(MonitorPanel.Updater) - Method in class avrora.gui.MonitorPanel
setVerbose(String, boolean) - Static method in class avrora.util.Verbose
setVisualPanel(JPanel, JPanel) - Method in interface avrora.gui.VisualMonitor
  This is called right after a monitor is actually init (when the sim is just beginning It physically let's the new monitor "know" about it's painting surfaces Note that it's possible with the new implementation that this function will be unnecessary
setVisualPanel(JPanel, JPanel) - Method in class avrora.gui.VisualRadioMonitor.VisualMonitor
setVisualPanel(JPanel, JPanel) - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
setZoom(int) - Method in class avrora.gui.TimeScale
sgen - Variable in class avrora.core.isdl.gen.CodemapGenerator
share(Segment.Sharer) - Method in class avrora.sim.Segment
  The `share()` method allows sharing of the underlying array representing the values of memory.
share() - Method in class avrora.sim.mcu.RegisterSet
  The `share()` method is NOT meant for general use.
shareCode(CodeSegment.CodeSharer) - Method in class avrora.sim.CodeSegment
shared_instr - Variable in class avrora.sim.BaseInterpreter
sharer - Variable in class avrora.sim.Segment
shares - Variable in class avrora.util.profiling.Proportion
shiftLeftOne(char) - Static method in class avrora.stack.AbstractArithmetic
  The `shiftLeftOne()` method shifts the abstract value left by one bit.
shiftLeftOne(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `shiftLeftOne()` method shifts the abstract value left by one bit and sets the lowest bit to the given value.
shortReport() - Method in class avrora.test.TestResult.ExpectedError
shortReport() - Method in class avrora.test.TestResult.ExpectedPass
shortReport() - Method in class avrora.test.TestResult.IncorrectError
shortReport() - Method in class avrora.test.TestResult.InternalError
shortReport() - Method in class avrora.test.TestResult.Malformed
shortReport() - Method in class avrora.test.TestResult.TestFailure
shortReport() - Method in class avrora.test.TestResult.TestSuccess
shortReport() - Method in class avrora.test.TestResult.UnexpectedException
shortReport() - Method in class avrora.test.TestResult
shouldNotInline(SubroutineDecl) - Method in class avrora.core.isdl.gen.Inliner
shouldRun - Variable in class avrora.sim.BaseInterpreter
  The `shouldRun` flag is used internally in the main execution runLoop to implement the correct semantics of `start()` and `stop()` to the clients.
shouldRun - Variable in class avrora.sim.clock.StepSynchronizer
showGui() - Method in class avrora.gui.AvroraGui
  Once the GUI has been "created" we call this function to physically display it to the screen
signExtend(int, int) - Static method in class avrora.util.Arithmetic
signalOthers() - Method in class avrora.sim.clock.IntervalSynchronizer
  The `signalOthers()` method is used to check whether the thread that has just arrived should signal other threads to continue.
sim - Variable in class avrora.sim.platform.ExternalFlash
sim - Variable in class avrora.sim.platform.LED
sim - Variable in class avrora.sim.platform.Mica2
sim - Variable in class avrora.sim.platform.PinWire
sim - Variable in class avrora.sim.platform.Seres
sim - Variable in class avrora.sim.platform.sensors.SensorBoard
sim - Variable in class avrora.sim.radio.CC1000Radio
simThread - Variable in class avrora.sim.platform.PinConnect.PinNode
simTimeBox - Variable in class avrora.gui.AvroraGui
  This handles the speed up/slow down, pause, stop, and start of a sim
simTimeEverything - Variable in class avrora.gui.ManageSimTime
  This is a panel that contains all the visual elements of this class.
simplify() - Method in class avrora.syntax.Item.InitializedData
simplify() - Method in class avrora.syntax.Item.Instruction
simplify() - Method in class avrora.syntax.Item.Label
simplify() - Method in class avrora.syntax.Item.NamedConstant
simplify() - Method in class avrora.syntax.Item.RegisterAlias
simplify() - Method in class avrora.syntax.Item.UninitializedData
simplify() - Method in class avrora.syntax.Item
  The `simplify()` method reduces any computable constants to values, resolves register aliases, and creates instruction instances within this item, depending on exactly which type of item it is.
simplify(Item) - Method in class avrora.syntax.Module
simplify(int, Context) - Method in class avrora.syntax.SyntacticOperand.Expr
simplify(int, Context) - Method in class avrora.syntax.SyntacticOperand.Register
simplify(int, Context) - Method in class avrora.syntax.SyntacticOperand
simplify(Item) - Method in class avrora.syntax.objdump.RawModule
simulator - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
simulator - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
simulator - Variable in class avrora.gui.VisualStackMonitor.SPMon
simulator - Variable in class avrora.monitors.EnergyMonitor.Monitor
simulator - Variable in class avrora.monitors.MemoryMonitor.Monitor
simulator - Variable in class avrora.monitors.ProfileMonitor.Monitor
simulator - Variable in class avrora.monitors.SleepMonitor.Monitor
simulator - Variable in class avrora.monitors.StackMonitor.Monitor
simulator - Variable in class avrora.monitors.TraceMonitor.Monitor
simulator - Variable in class avrora.sim.BaseInterpreter
  The `simulator` field stores a reference to the simulator that this interpreter instance corresponds to.
simulator - Variable in class avrora.sim.Simulation.Node
simulator - Variable in class avrora.sim.mcu.AtmelInternalDevice
simulator - Variable in class avrora.sim.mcu.AtmelMicrocontroller
size - Variable in class avrora.core.InstrProperties
  The `size` field stores the size of the instruction in bytes.
size() - Method in class avrora.gui.GraphEvents.MyVector
size - Variable in class avrora.sim.Segment
size - Variable in class avrora.sim.mcu.USART.Frame
size() - Method in class avrora.stack.StateCache.Set
size() - Method in class avrora.util.Options
size() - Method in class avrora.util.profiling.Measurements
  The `size()` method returns the number of entries in this measurement data.
size() - Method in class avrora.util.profiling.TimedMeasurements
  The `size()` method returns the number of entries in this measurement data.
skip() - Method in class avrora.stack.isea.ISEInterpreter
skipAhead() - Method in class avrora.sim.clock.DeltaQueue
  The `skipAhead()` method skips ahead to the next event in the queue and fires it.
skipAhead() - Method in class avrora.sim.clock.MainClock
  The `skipAhead()` method skips ahead to the next event in the queue and fires it.
skipWhiteSpace(CharacterIterator) - Static method in class avrora.util.StringUtil
sleep() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `sleep()` method is called by the interpreter when the program executes a SLEEP instruction.
sleep() - Method in interface avrora.sim.mcu.Microcontroller
  The `sleep()` method puts the microcontroller into the sleep mode defined by its internal sleep configuration register.
sleepCycles - Variable in class avrora.monitors.SleepMonitor.Monitor
sleepState - Variable in class avrora.sim.mcu.AtmelMicrocontroller
sleeping - Variable in class avrora.sim.BaseInterpreter
  The `sleeping` flag is used internally in the simulator when the microcontroller enters the sleep mode.
sliderAndSpinnerDispatch(ChangeEvent) - Method in class avrora.gui.ManageSimTime
  This function checks to see if an event was caused by this panel.
smap - Variable in class avrora.stack.isea.ISEAnalyzer
someData - Variable in class avrora.util.profiling.MinMaxMean
source - Variable in class avrora.stack.StateTransitionGraph.Edge
southPinInt - Variable in class avrora.sim.platform.PinConnect.PinNode
southPinRx - Variable in class avrora.sim.platform.PinConnect.PinNode
southPinTx - Variable in class avrora.sim.platform.PinConnect.PinNode
spaces() - Method in class avrora.util.Printer
spaces() - Method in class avrora.util.Verbose.Printer
specialConstructor - Variable in class avrora.core.isdl.parser.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in class avrora.syntax.AbstractParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialConstructor - Variable in class avrora.test.probes.ParseException
  This variable determines which constructor was used to create this object and thereby affects the semantics of the "getMessage" method (see below).
specialToken - Variable in class avrora.core.isdl.parser.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class avrora.syntax.atmel.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class avrora.syntax.gas.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class avrora.syntax.objdump.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
specialToken - Variable in class avrora.test.probes.Token
  This field is used to access special tokens that occur prior to this token, but after the immediately preceding regular (non-special) token.
splice(String[], String[]) - Static method in class avrora.util.StringUtil
squote(char) - Static method in class avrora.util.StringUtil
  The `squote()` method simply adds single quotes around a character.
sram - Variable in class avrora.sim.BaseInterpreter
sram_max - Variable in class avrora.sim.BaseInterpreter
sram_size - Variable in class avrora.sim.mcu.MicrocontrollerProperties
  The `sram_size` field stores the size of the SRAM (excluding the general purpose registers and IO registers) on this microcontroller.
sram_start - Variable in class avrora.sim.BaseInterpreter
sram_watches - Variable in class avrora.sim.BaseInterpreter
stack - Variable in class avrora.stack.isea.ISEAnalyzer
start() - Method in class avrora.sim.BaseInterpreter
start() - Method in class avrora.sim.Simulation
  The `start()` method starts the simulation execution.
start() - Method in class avrora.sim.Simulator
  The `start()` method begins the simulation.
start() - Method in class avrora.sim.clock.IntervalSynchronizer
  The `start()` method starts the threads executing, and the synchronizer will add whatever synchronization to their execution that is necessary to preserve the global timing properties of simulation.
start() - Method in class avrora.sim.clock.StepSynchronizer
  The `start()` method starts the threads executing, and the synchronizer will add whatever synchronization to their execution that is necessary to preserve the global timing properties of simulation.
start() - Method in class avrora.sim.clock.Synchronizer
  The `start()` method starts the threads executing, and the synchronizer will add whatever synchronization to their execution that is necessary to preserve the global timing properties of simulation.
start() - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `start()` method starts the threads executing, and the synchronizer will add whatever synchronization to their execution that is necessary to preserve the global timing properties of simulation.
startMode - Static variable in class avrora.sim.radio.RadioEnergy
  `startMode` the default operating mode after turning on / reset
startPaintThread() - Method in class avrora.gui.AvroraGui
  This function will dispatch a new thread that will repaint our dynamic monitor window if new data has been collected
startReceive() - Method in class avrora.sim.mcu.USART
  Initiate a receive between the UART and the connected device.
startState - Variable in class avrora.sim.FiniteStateMachine
startblock() - Method in class avrora.util.Printer
startblock(String) - Method in class avrora.util.Printer
startblock() - Method in class avrora.util.Verbose.Printer
startblock(String) - Method in class avrora.util.Verbose.Printer
state - Variable in class avrora.actions.SimAction.BreakPointException
  The `state` field stores a reference to the state of the simulator when the breakpoint occurred, before executing the instruction.
state - Variable in class avrora.actions.SimAction.TimeoutException
  The `state` field stores the state of the simulation at the point at which the timeout occurred.
state - Variable in class avrora.monitors.EnergyMonitorLog.Monitor
state - Variable in class avrora.sim.BaseInterpreter
state - Variable in class avrora.sim.platform.LED
state - Variable in class avrora.sim.platform.PinWire
state - Variable in class avrora.stack.AbstractInterpreter
state - Variable in class avrora.stack.StateTransitionGraph.StateInfo
state - Variable in class avrora.stack.StateTransitionGraph.StateList
state - Variable in class avrora.stack.isea.ISEInterpreter
stateChange(Energy) - Method in class avrora.monitors.EnergyMonitorLog.Monitor
  called when the state of the device changes this component logs these state changes
stateChange(Energy) - Method in class avrora.sim.energy.EnergyControl.Instance
  update the state of a device
stateChange(Energy) - Method in interface avrora.sim.energy.EnergyObserver
  called when the state of the device changes this component logs these state changes
stateChanged(ChangeEvent) - Method in class avrora.gui.AvroraGui
  Some modules (like a spinner) detect a state change and not an action.
stateChanged(ChangeEvent) - Method in class avrora.gui.GraphEvents
  this function processes the monitor options and re-sets the internal variables appropiatly
stateChanged(ChangeEvent) - Method in class avrora.gui.GraphNumbers
  this function processes the monitor options and resets the internal variables appropriately
stateMachine - Variable in class avrora.sim.platform.ExternalFlash
stateMachine - Variable in class avrora.sim.radio.CC1000Radio
stateSet - Variable in class avrora.stack.StateTransitionGraph.StateInfo
states - Variable in class avrora.sim.FiniteStateMachine
states - Variable in class avrora.stack.isea.ISEInterpreter
staticFlag - Static variable in class avrora.core.isdl.parser.SimpleCharStream
staticFlag - Static variable in class avrora.syntax.atmel.SimpleCharStream
staticFlag - Static variable in class avrora.syntax.gas.SimpleCharStream
staticFlag - Static variable in class avrora.syntax.objdump.SimpleCharStream
staticFlag - Static variable in class avrora.test.probes.SimpleCharStream
step() - Method in class avrora.sim.BaseInterpreter
  The `step()` method steps this node forward one instruction or one clock cycle.
step() - Method in class avrora.sim.GenInterpreter
step() - Method in class avrora.sim.Simulator
  The `step()` method steps the simulation one instruction or cycle.
step(int[], Simulator[]) - Method in class avrora.sim.clock.StepSynchronizer.RunThread
stepsize - Variable in class avrora.gui.GraphEvents
  number of pixels per x-axis value
stepsizeVisual - Variable in class avrora.gui.GraphEvents
  The visual component for setting `stepsize`
stepsizeVisual - Variable in class avrora.gui.GraphNumbers
  The visual widget that sets the step size
stillWaiting(IntervalSynchronizer.WaitSlot) - Method in class avrora.sim.clock.IntervalSynchronizer
stmts - Variable in class avrora.core.isdl.CodeRegion
stmts - Variable in class avrora.sim.dbbc.DBBC.CodeBlock
stop() - Method in class avrora.sim.BaseInterpreter
  The `stop()` method terminates the execution of the simulation.
stop() - Method in class avrora.sim.Simulation
  The `stop()` method stops the simulation.
stop() - Method in class avrora.sim.Simulator
  The `stop()` method stops the simulation if it is running.
stop() - Method in class avrora.sim.clock.IntervalSynchronizer
  The `stop()` method will terminate all the simulation threads.
stop() - Method in class avrora.sim.clock.StepSynchronizer
  The `stop()` method will terminate all the simulation threads.
stop() - Method in class avrora.sim.clock.Synchronizer
  The `stop()` method will terminate all the simulation threads.
stop() - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `stop()` method will terminate all the simulation threads.
stopNode(int) - Method in class avrora.sim.Simulation
  The `stopNode()` method can be used to stop (and remove) a single node from the simulation while the simulation is running.
stopPaintThread() - Method in class avrora.gui.AvroraGui
  This function will dispatch a new thread that will repaint our dynamic monitor window if new data has been collected
stopSim() - Method in class avrora.actions.GUIAction
storeProgramMemory() - Method in class avrora.sim.BaseInterpreter
  The `storeProgramMemory()` method is called when the program executes the SPM instruction which stores to the program memory.
strength - Variable in class avrora.sim.radio.Radio.Transmission
stringValue() - Method in class avrora.util.Option.Bool
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option.Double
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option.Interval
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option.List
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option.Long
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option.Str
  The `stringValue()` method returns a string representation of the value of the option.
stringValue() - Method in class avrora.util.Option
  The `stringValue()` method returns a string representation of the value of the option.
subscribe(EnergyObserver) - Method in class avrora.sim.energy.EnergyControl.Instance
  add energy monitor
subst - Variable in class avrora.core.isdl.EncodingDecl.Derived
subtract(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `add()` method performs subtraction of two abstract values.
success() - Static method in class avrora.util.Status
  The `success()` method simply prints out "OK" in a stylized fashion as well as the time since the last `begin()` call.
success(String) - Static method in class avrora.util.Status
  The `success()` method simply prints out the success string in a stylized fashion as well as the time since the last `begin()` call.
synch(long) - Method in class avrora.sim.clock.IntervalSynchronizer
  The `synch()` method will pause all of the nodes at the same global time.
synch(long) - Method in class avrora.sim.clock.StepSynchronizer
  The `synch()` method will pause all of the nodes at the same global time.
synch(long) - Method in class avrora.sim.clock.Synchronizer
  The `synch()` method will pause all of the nodes at the same global time.
synch(long) - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `synch()` method will pause all of the nodes at the same global time.
synchronizer - Variable in class avrora.sim.Simulation
synchronizer - Variable in class avrora.sim.SimulatorThread
  The `synchronizer` field stores a reference to the synchronizer that this thread is a part of; this is needed so that when the thread finishes execution (either through a timeout or error, etc), it can be removed from the simulation and the rest of the simulation can continue.
synchronizer - Variable in class avrora.sim.radio.SimpleAir
syntax - Variable in class avrora.core.isdl.InstrDecl
  The `syntax` field stores a token corresponding to the syntax of the instruction.

## T

T - Variable in class avrora.sim.BaseInterpreter
TCCR0 - Static variable in interface avrora.stack.IORegisterConstants
TCCR1A - Static variable in interface avrora.stack.IORegisterConstants
TCCR1B - Static variable in interface avrora.stack.IORegisterConstants
TCCR1C - Static variable in interface avrora.stack.IORegisterConstants
TCCR2 - Static variable in interface avrora.stack.IORegisterConstants
TCCR3A - Static variable in interface avrora.stack.IORegisterConstants
TCCR3B - Static variable in interface avrora.stack.IORegisterConstants
TCCR3C - Static variable in interface avrora.stack.IORegisterConstants
TCNT0 - Static variable in interface avrora.stack.IORegisterConstants
TCNT1H - Static variable in interface avrora.stack.IORegisterConstants
TCNT1L - Static variable in interface avrora.stack.IORegisterConstants
TCNT2 - Static variable in interface avrora.stack.IORegisterConstants
TCNT3H - Static variable in interface avrora.stack.IORegisterConstants
TCNT3L - Static variable in interface avrora.stack.IORegisterConstants
TEMP_COALLESCING - Variable in class avrora.sim.dbbc.DBBC
TEST0 - Static variable in class avrora.sim.radio.CC1000Radio
TEST1 - Static variable in class avrora.sim.radio.CC1000Radio
TEST2 - Static variable in class avrora.sim.radio.CC1000Radio
TEST3 - Static variable in class avrora.sim.radio.CC1000Radio
TEST4 - Static variable in class avrora.sim.radio.CC1000Radio
TEST5 - Static variable in class avrora.sim.radio.CC1000Radio
TEST6 - Static variable in class avrora.sim.radio.CC1000Radio
TEXT - Static variable in interface avrora.syntax.gas.GASParserConstants
TIFR - Static variable in interface avrora.stack.IORegisterConstants
TIFR_reg - Variable in class avrora.sim.mcu.ATMegaFamily
TIFR_reg - Variable in class avrora.sim.mcu.Timer8Bit
TIME_LENGTH - Static variable in class avrora.util.StringUtil
TIMSK - Static variable in interface avrora.stack.IORegisterConstants
TIMSK - Static variable in class avrora.stack.isea.ISEValue
TIMSK_NUM - Static variable in class avrora.stack.isea.ISEState
TIMSK_OFF - Static variable in class avrora.stack.isea.ISEState
TIMSK_reg - Variable in class avrora.sim.mcu.ATMegaFamily
TIMSK_reg - Variable in class avrora.sim.mcu.Timer8Bit
TOPOLOGY - Variable in class avrora.sim.types.SensorSimulation
TRACE - Variable in class avrora.actions.AnalyzeStackAction
TRACE - Static variable in class avrora.stack.Analyzer
TRACE_SUMMARY - Variable in class avrora.actions.AnalyzeStackAction
TRACE_SUMMARY - Static variable in class avrora.stack.Analyzer
TRANSFER_TIME - Static variable in interface avrora.sim.radio.Radio
  Time in main clock cycles it takes for one byte to be sent over the air.
TRUE - Static variable in class avrora.core.isdl.gen.ConstantPropagator
TRUE - Static variable in class avrora.stack.AbstractArithmetic
  The `TRUE` field represents the abstract bit that is known to be true.
TST - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
TST - Static variable in interface avrora.syntax.gas.GASParserConstants
TST - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
TWAR - Static variable in interface avrora.stack.IORegisterConstants
TWBR - Static variable in interface avrora.stack.IORegisterConstants
TWCR - Static variable in interface avrora.stack.IORegisterConstants
TWDR - Static variable in interface avrora.stack.IORegisterConstants
TWSR - Static variable in interface avrora.stack.IORegisterConstants
TX_PD - Static variable in class avrora.sim.radio.CC1000Radio.MainRegister
TYPE - Static variable in interface avrora.syntax.gas.GASParserConstants
Term() - Method in class avrora.core.isdl.parser.ISDLParser
Term() - Method in class avrora.syntax.atmel.AtmelParser
Term() - Method in class avrora.syntax.gas.GASParser
Term() - Method in class avrora.syntax.objdump.ObjDumpParser
TermUtil - class avrora.util.TermUtil.
TermUtil() - Constructor for class avrora.util.TermUtil
Terminal - class avrora.util.Terminal.
  The `Terminal` class provides Avrora with the ability to print color on the terminal by using control characters.
Terminal() - Constructor for class avrora.util.Terminal
TestAction - class avrora.actions.TestAction.
  The `TestAction` class represents an action to invoke the built-in automated testing framework that is used for regression testing in Avrora.
TestAction() - Constructor for class avrora.actions.TestAction
TestCase - class avrora.test.TestCase.
  The `TestCase` class encapsulates the notion of a test case in the automated testing framework.
TestCase(String, Properties) - Constructor for class avrora.test.TestCase
TestCase.ExpectCompilationError - class avrora.test.TestCase.ExpectCompilationError.
TestCase.ExpectCompilationError(String, Properties) - Constructor for class avrora.test.TestCase.ExpectCompilationError
TestCase.Malformed - class avrora.test.TestCase.Malformed.
TestCase.Malformed(String, String) - Constructor for class avrora.test.TestCase.Malformed
TestHarness - interface avrora.test.TestHarness.
  The `TestHarness` interface encapsulates the notion of a testing harness that is capable of creating the correct type of test cases given the file and a list of properties extracted from the file by the automated testing framework.
TestResult - class avrora.test.TestResult.
  The `TestResult` class represents the result of running a test cases.
TestResult() - Constructor for class avrora.test.TestResult
TestResult.ExpectedError - class avrora.test.TestResult.ExpectedError.
TestResult.ExpectedError(String) - Constructor for class avrora.test.TestResult.ExpectedError
TestResult.ExpectedPass - class avrora.test.TestResult.ExpectedPass.
TestResult.ExpectedPass(SimplifierError) - Constructor for class avrora.test.TestResult.ExpectedPass
TestResult.IncorrectError - class avrora.test.TestResult.IncorrectError.
TestResult.IncorrectError(String, SimplifierError) - Constructor for class avrora.test.TestResult.IncorrectError
TestResult.InternalError - class avrora.test.TestResult.InternalError.
TestResult.InternalError(Avrora.InternalError) - Constructor for class avrora.test.TestResult.InternalError
TestResult.Malformed - class avrora.test.TestResult.Malformed.
TestResult.Malformed(String) - Constructor for class avrora.test.TestResult.Malformed
TestResult.TestFailure - class avrora.test.TestResult.TestFailure.
TestResult.TestFailure() - Constructor for class avrora.test.TestResult.TestFailure
TestResult.TestFailure(String) - Constructor for class avrora.test.TestResult.TestFailure
TestResult.TestSuccess - class avrora.test.TestResult.TestSuccess.
TestResult.TestSuccess() - Constructor for class avrora.test.TestResult.TestSuccess
TestResult.UnexpectedException - class avrora.test.TestResult.UnexpectedException.
TestResult.UnexpectedException(Throwable) - Constructor for class avrora.test.TestResult.UnexpectedException
TimeScale - class avrora.gui.TimeScale.
  The `TimeScale` class handles the conversion of time scales in displaying timing windows within the GUI simulation.
TimedMeasurements - class avrora.util.profiling.TimedMeasurements.
  The `TimedMeasurements` class implements a simple array-like data structure that collects a large list of integers and supports iterating over that list.
TimedMeasurements() - Constructor for class avrora.util.profiling.TimedMeasurements
  The default constructor for the `Measurements` class creates a new instance where the fragment size is 500.
TimedMeasurements(int) - Constructor for class avrora.util.profiling.TimedMeasurements
  This constructor for the `Measurements` class creates a new instance with the specified fragment size.
TimedMeasurements.Iterator - class avrora.util.profiling.TimedMeasurements.Iterator.
TimedMeasurements.Measurement - class avrora.util.profiling.TimedMeasurements.Measurement.
TimedMeasurements.Measurement() - Constructor for class avrora.util.profiling.TimedMeasurements.Measurement
Timer16Bit - class avrora.sim.mcu.Timer16Bit.
  The `Timer16Bit` class emulates the functionality and behavior of a 16-bit timer on the Atmega128.
Timer16Bit(int, int, AtmelMicrocontroller) - Constructor for class avrora.sim.mcu.Timer16Bit
Timer16Bit.BufferedRegister - class avrora.sim.mcu.Timer16Bit.BufferedRegister.
  In PWN modes, writes to the OCRnx registers are buffered.
Timer16Bit.BufferedRegister() - Constructor for class avrora.sim.mcu.Timer16Bit.BufferedRegister
Timer16Bit.OCRnxPairedRegister - class avrora.sim.mcu.Timer16Bit.OCRnxPairedRegister.
  The normal 16-bit read behavior described in the doc for PairedRegister does not apply for the OCRnx registers.
Timer16Bit.OCRnxTempHighRegister - class avrora.sim.mcu.Timer16Bit.OCRnxTempHighRegister.
  See doc for OCRnxPairedRegister.
Timer16Bit.PairedRegister - class avrora.sim.mcu.Timer16Bit.PairedRegister.
  The `PairedRegister` class exists to implement the shared temporary register for the high byte of the 16-bit registers corresponding to a 16-bit timer.
Timer16Bit.TCNTnRegister - class avrora.sim.mcu.Timer16Bit.TCNTnRegister.
  Overloads the write behavior of this class of register in order to implement compare match blocking for one timer period.
Timer16Bit.TCNTnRegister() - Constructor for class avrora.sim.mcu.Timer16Bit.TCNTnRegister
Timer16Bit.Ticker - class avrora.sim.mcu.Timer16Bit.Ticker.
  The `Ticker implements the periodic behavior of the timer.`
Timer16Bit.Ticker() - Constructor for class avrora.sim.mcu.Timer16Bit.Ticker
Timer8Bit - class avrora.sim.mcu.Timer8Bit.
  Base class of 8-bit timers.
Timer8Bit(AtmelMicrocontroller, int, int, int, int, int, int[]) - Constructor for class avrora.sim.mcu.Timer8Bit
Timer8Bit.BufferedRegister - class avrora.sim.mcu.Timer8Bit.BufferedRegister.
  `BufferedRegister` implements a register with a write buffer.
Timer8Bit.BufferedRegister() - Constructor for class avrora.sim.mcu.Timer8Bit.BufferedRegister
Timer8Bit.ControlRegister - class avrora.sim.mcu.Timer8Bit.ControlRegister.
Timer8Bit.ControlRegister() - Constructor for class avrora.sim.mcu.Timer8Bit.ControlRegister
Timer8Bit.TCNTnRegister - class avrora.sim.mcu.Timer8Bit.TCNTnRegister.
  Overloads the write behavior of this class of register in order to implement compare match blocking for one timer period.
Timer8Bit.TCNTnRegister() - Constructor for class avrora.sim.mcu.Timer8Bit.TCNTnRegister
Timer8Bit.Ticker - class avrora.sim.mcu.Timer8Bit.Ticker.
  The `Ticker implements the periodic behavior of the timer.`
Timer8Bit.Ticker() - Constructor for class avrora.sim.mcu.Timer8Bit.Ticker
Token - class avrora.core.isdl.parser.Token.
  Describes the input token stream.
Token() - Constructor for class avrora.core.isdl.parser.Token
Token - class avrora.syntax.atmel.Token.
  Describes the input token stream.
Token() - Constructor for class avrora.syntax.atmel.Token
Token - class avrora.syntax.gas.Token.
  Describes the input token stream.
Token() - Constructor for class avrora.syntax.gas.Token
Token - class avrora.syntax.objdump.Token.
  Describes the input token stream.
Token() - Constructor for class avrora.syntax.objdump.Token
Token - class avrora.test.probes.Token.
  Describes the input token stream.
Token() - Constructor for class avrora.test.probes.Token
TokenMgrError - error avrora.core.isdl.parser.TokenMgrError.
TokenMgrError() - Constructor for class avrora.core.isdl.parser.TokenMgrError
TokenMgrError(String, int) - Constructor for class avrora.core.isdl.parser.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for class avrora.core.isdl.parser.TokenMgrError
TokenMgrError - error avrora.syntax.atmel.TokenMgrError.
TokenMgrError() - Constructor for class avrora.syntax.atmel.TokenMgrError
TokenMgrError(String, int) - Constructor for class avrora.syntax.atmel.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for class avrora.syntax.atmel.TokenMgrError
TokenMgrError - error avrora.syntax.gas.TokenMgrError.
TokenMgrError() - Constructor for class avrora.syntax.gas.TokenMgrError
TokenMgrError(String, int) - Constructor for class avrora.syntax.gas.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for class avrora.syntax.gas.TokenMgrError
TokenMgrError - error avrora.syntax.objdump.TokenMgrError.
TokenMgrError() - Constructor for class avrora.syntax.objdump.TokenMgrError
TokenMgrError(String, int) - Constructor for class avrora.syntax.objdump.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for class avrora.syntax.objdump.TokenMgrError
TokenMgrError - error avrora.test.probes.TokenMgrError.
TokenMgrError() - Constructor for class avrora.test.probes.TokenMgrError
TokenMgrError(String, int) - Constructor for class avrora.test.probes.TokenMgrError
TokenMgrError(boolean, int, int, int, String, char, int) - Constructor for class avrora.test.probes.TokenMgrError
Topology - class avrora.sim.radio.freespace.Topology.
  handles node positions.
Topology(String) - Constructor for class avrora.sim.radio.freespace.Topology
  new topology
TraceMonitor - class avrora.monitors.TraceMonitor.
  The `ProfileMonitor` class represents a monitor that can collect profiling information such as counts and branchcounts about the program as it executes.
TraceMonitor() - Constructor for class avrora.monitors.TraceMonitor
  The constructor for the `ProfileMonitor` class creates a factory that is capable of producing profile monitors for each simulator passed.
TraceMonitor.Monitor - class avrora.monitors.TraceMonitor.Monitor.
  The `Monitor` class implements the monitor for the profiler.
TraceMonitor.Monitor.EndProbe - class avrora.monitors.TraceMonitor.Monitor.EndProbe.
TraceMonitor.Monitor.GlobalProbe - class avrora.monitors.TraceMonitor.Monitor.GlobalProbe.
TraceMonitor.Monitor.GlobalProbe() - Constructor for class avrora.monitors.TraceMonitor.Monitor.GlobalProbe
TraceMonitor.Monitor.StartProbe - class avrora.monitors.TraceMonitor.Monitor.StartProbe.
TransactionalList - class avrora.sim.util.TransactionalList.
  The `TransactionalList` class implements a list of objects that has the special property that it can be frozen temporarily and unfrozen.
TransactionalList() - Constructor for class avrora.sim.util.TransactionalList
TransactionalList.Link - class avrora.sim.util.TransactionalList.Link.
  The `Link` class is used internally to represent links for the list of objects and updates.
TripTimeMonitor - class avrora.monitors.TripTimeMonitor.
  The `TripTimeMonitor` class implements a monitor that tracks the time from executing instruction A in the program until the program reaches instruction B.
TripTimeMonitor() - Constructor for class avrora.monitors.TripTimeMonitor
TripTimeMonitor.PointToPointMon - class avrora.monitors.TripTimeMonitor.PointToPointMon.
TripTimeMonitor.PointToPointMon.PTPProbe - class avrora.monitors.TripTimeMonitor.PointToPointMon.PTPProbe.
TripTimeMonitor.PointToPointMon.PTPProbe() - Constructor for class avrora.monitors.TripTimeMonitor.PointToPointMon.PTPProbe
TypeDirective() - Method in class avrora.syntax.gas.GASParser
table - Variable in class avrora.gui.ManageTopology
  You can directly access this table in order to get the values of nodes currently selected
tail - Variable in class avrora.sim.util.TransactionalList
tail - Variable in class avrora.syntax.ExprList
takenCount - Variable in class avrora.sim.util.BranchCounter
  This field tracks the number of times the branch is taken.
target - Variable in class avrora.stack.StateTransitionGraph.Edge
textReport() - Method in class avrora.util.profiling.Counter
textReport() - Method in class avrora.util.profiling.DataItem
textReport() - Static method in class avrora.util.profiling.Databank
  Generate a textual report of the databases.
textReport() - Method in class avrora.util.profiling.Database
  Generate a textual report of the information in this database.
textReport() - Method in class avrora.util.profiling.Distribution
  Generate a textual report of the data gathered.
textReport() - Method in class avrora.util.profiling.MinMaxMean
  Generate a textual report of the data gathered.
textReport() - Method in class avrora.util.profiling.Proportion.Share
textReport() - Method in class avrora.util.profiling.Proportion
  Generate a text report of the shares.
theGraph - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
theGraph - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
theModel - Variable in class avrora.gui.ManageTopology
  the model holds the underlying data for the table If you add nodes to the sim, you should also add them to this model
thread - Variable in class avrora.sim.Simulation.Node
thread - Variable in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
thread - Variable in class avrora.sim.clock.StepSynchronizer
thread - Variable in class avrora.sim.types.SingleSimulation.SingleSynchronizer
threadMap - Variable in class avrora.sim.clock.IntervalSynchronizer
threads - Variable in class avrora.sim.clock.StepSynchronizer
thrown - Variable in class avrora.Avrora.Unexpected
ticksBeforeBase - Variable in class avrora.sim.clock.ClockPrescaler
  The `ticksBeforeBase` field stores the number of ticks that were recorded before the prescaler was reset.
time - Variable in class avrora.monitors.ProfileMonitor.Monitor.CCProbe
time - Variable in class avrora.util.profiling.TimedMeasurements.Measurement
timeBegan - Variable in class avrora.monitors.ProfileMonitor.Monitor.CCProbe
timeBegan - Variable in class avrora.sim.util.ProgramTimeProfiler
timeout - Variable in class avrora.actions.SimAction.TimeoutException
  The `timeout` field stores the value (in clock cycles) of the timeout that occurred.
timeout - Variable in class avrora.sim.Simulator.ClockCycleTimeout
timerClock - Variable in class avrora.sim.mcu.Timer8Bit
tmpDir - Variable in class avrora.sim.dbbc.DBBC
to0xHex(long, int) - Static method in class avrora.util.StringUtil
toBin(long, int) - Static method in class avrora.util.StringUtil
toBit(boolean) - Static method in class avrora.util.StringUtil
toDecimal(long, int) - Static method in class avrora.util.StringUtil
toFixedFloat(float, int) - Static method in class avrora.util.StringUtil
toHex(long, int) - Static method in class avrora.util.StringUtil
  The `toHex()` converts the specified long value into a hexadecimal string of the given with.
toHex(StringBuffer, long, int) - Static method in class avrora.util.StringUtil
toIDTimeString(StringBuffer, int, Clock) - Static method in class avrora.util.StringUtil
toIDTimeString(int, Clock) - Static method in class avrora.util.StringUtil
toMultirepString(int, int) - Static method in class avrora.util.StringUtil
toShortString(char) - Static method in class avrora.stack.AbstractArithmetic
  The `toShortString()` method converts an 8-bit abstract value to a string representation.
toString() - Method in class avrora.Version
  The `toString()` method converts this version to a string.
toString() - Method in class avrora.core.Instr
  The `toString()` method simply converts this instruction to a string by appending the operands to the variant of the instruction as a string.
toString() - Method in class avrora.core.Program.Location
toString() - Method in class avrora.core.Register.Set
  The `toString()` method converts this set to a string representation.
toString() - Method in class avrora.core.Register
  The `toString()` method coverts this register to a string.
toString() - Method in class avrora.core.SourceMapping.Location
toString() - Method in class avrora.core.isdl.ast.Arith.BinOp
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.Arith.UnOp
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.BitExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.BitRangeExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.CallExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.CallStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.CommentStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.ConversionExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.DeclStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.IfStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.Literal.BoolExpr
toString() - Method in class avrora.core.isdl.ast.Literal.IntExpr
toString() - Method in class avrora.core.isdl.ast.Logical.BinOp
toString() - Method in class avrora.core.isdl.ast.Logical.UnOp
toString() - Method in class avrora.core.isdl.ast.MapAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.MapBitAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.MapBitRangeAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.MapExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.core.isdl.ast.ReturnStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.VarAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.VarBitAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `toString()` method recursively converts this statement to a string.
toString() - Method in class avrora.core.isdl.ast.VarExpr
  The `toString()` method recursively converts this expression to a string.
toString() - Method in class avrora.sim.mcu.USART.Frame
toString() - Method in class avrora.sim.platform.LCDScreen
  The `toString()` method converts this LCD screen into a String representation.
toString(char) - Static method in class avrora.stack.AbstractArithmetic
  The `toString()` method converts an 8-bit abstract value to a string representation.
toString(char, StringBuffer) - Static method in class avrora.stack.AbstractArithmetic
  The `toString()` method converts an 8-bit abstract value to a string representation and appends it to the end of the given string buffer.
toString() - Method in class avrora.stack.AbstractState
toString(char) - Static method in class avrora.stack.StatePrinter
toString(byte) - Static method in class avrora.stack.isea.ISEValue
toString() - Method in class avrora.syntax.AbstractToken
  Returns the image.
toString() - Method in class avrora.syntax.Expr.BinOp
toString() - Method in class avrora.syntax.Expr.Func
toString() - Method in class avrora.syntax.Expr.RelativeAddress
toString() - Method in class avrora.syntax.Expr.Term
toString() - Method in class avrora.syntax.Expr.UnOp
toString() - Method in class avrora.syntax.Item.InitializedData
toString() - Method in class avrora.syntax.Item.Instruction
toString() - Method in class avrora.syntax.Item.Label
toString() - Method in class avrora.syntax.Item.NamedConstant
toString() - Method in class avrora.syntax.Item.RegisterAlias
toString() - Method in class avrora.syntax.Item.UninitializedData
toString() - Method in class avrora.syntax.ProgramPoint
toString() - Method in class avrora.syntax.SyntacticOperand.Expr
toString() - Method in class avrora.syntax.SyntacticOperand.Register
toString() - Method in class avrora.syntax.objdump.Token
  Returns the image.
toString() - Method in class avrora.test.probes.Token
  Returns the image.
toString() - Method in class avrora.util.profiling.DataItem
toString() - Method in class avrora.util.profiling.Database
toString() - Method in class avrora.util.profiling.MinMaxMean
token - Variable in class avrora.core.isdl.ast.Literal
  The `token` fields stores a reference to the original token representing this literal.
token - Variable in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
token - Variable in class avrora.core.isdl.parser.ISDLParser
token - Variable in class avrora.syntax.Expr.Term
token - Variable in class avrora.syntax.atmel.AtmelParser
token - Variable in class avrora.syntax.gas.GASParser
token - Variable in class avrora.syntax.objdump.ObjDumpParser
token - Variable in class avrora.test.probes.ProbeParser
tokenImage - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
tokenImage - Variable in class avrora.core.isdl.parser.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Variable in class avrora.syntax.AbstractParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
tokenImage - Static variable in interface avrora.syntax.gas.GASParserConstants
tokenImage - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
tokenImage - Variable in class avrora.test.probes.ParseException
  This is a reference to the "tokenImage" array of the generated parser within which the parse error occurred.
tokenImage - Static variable in interface avrora.test.probes.ProbeParserConstants
tokenToBool(Token) - Static method in class avrora.core.isdl.ast.Expr
  The `tokenToBool()` static method is a utility to evaluate a token as a boolean literal.
tokenToInt(Token) - Static method in class avrora.core.isdl.ast.Expr
  The `tokenToInt()` static method is a utility to evaluate a token as an integer.
token_source - Variable in class avrora.core.isdl.parser.ISDLParser
token_source - Variable in class avrora.syntax.atmel.AtmelParser
token_source - Variable in class avrora.syntax.gas.GASParser
token_source - Variable in class avrora.syntax.objdump.ObjDumpParser
token_source - Variable in class avrora.test.probes.ProbeParser
tolist1(Object) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
tolist2(Object, Object) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
topMenu - Variable in class avrora.gui.AvroraGui
  This menu bar now contols most of the options specified by the GUI (this is the file, edit, options menus)
topologyBox - Variable in class avrora.gui.AvroraGui
  All information on node topology is displayed and set via this class
topologyVisual - Variable in class avrora.gui.ManageTopology
  This is a containter panel - it can be directly displayed and the internals of this class will ensure it displays the correct topology information
total - Variable in class avrora.util.profiling.MinMaxMean
total - Variable in class avrora.util.profiling.Proportion
totalname - Variable in class avrora.util.profiling.MinMaxMean
traceEdge(int, StateCache.State, StateCache.State, int) - Static method in class avrora.stack.Analyzer
trackedMaps - Static variable in class avrora.core.isdl.gen.ConstantPropagator
transEvent - Variable in class avrora.sim.FiniteStateMachine
transHead - Variable in class avrora.sim.util.TransactionalList
transTail - Variable in class avrora.sim.util.TransactionalList
transition(int) - Method in class avrora.sim.FiniteStateMachine
  The `transition()` method transitions the machine from the current state to a new state.
transmit() - Method in class avrora.sim.radio.CC1000Radio.Transmitter
transmit(Radio, Radio.Transmission) - Method in interface avrora.sim.radio.RadioAir
  The `transmit()` method is called by a radio when it begins to transmit a packet over the air.
transmit(Radio, Radio.Transmission) - Method in class avrora.sim.radio.SimpleAir
  The `transmit()` method is called by a radio when it begins to transmit a packet over the air.
transmit(Radio, Radio.Transmission) - Method in class avrora.sim.radio.freespace.FreeSpaceAir
  transmit packet
transmitFrame() - Method in class avrora.sim.mcu.SPI
transmitFrame() - Method in interface avrora.sim.mcu.SPIDevice
  Transmit a frame from this device.
transmitFrame() - Method in class avrora.sim.mcu.USART.SerialPrinter
transmitFrame() - Method in interface avrora.sim.mcu.USART.USARTDevice
  Transmit a frame from this device.
transmitFrame() - Method in class avrora.sim.mcu.USART
transmitFrame() - Method in class avrora.sim.platform.LCDScreen
transmitFrame() - Method in class avrora.sim.platform.SerialForwarder
transmitFrame() - Method in class avrora.sim.radio.CC1000Radio.ATMegaController
  Transmits an `SPIFrame` to be received by the connected device.
transmitter - Variable in class avrora.sim.radio.CC1000Radio
trimquotes(String) - Static method in class avrora.util.StringUtil
trueBranch - Variable in class avrora.core.isdl.ast.IfStmt
  The `trueBranch` field stores a reference to the list of statements to be executed if the condition is true.
ttm - Static variable in class avrora.sim.radio.CC1000Radio
type - Variable in class avrora.core.isdl.CodeRegion.Operand
type - Variable in class avrora.core.isdl.ast.DeclStmt
  The `type` field stores a reference to a token representing the type of the local.
type - Variable in class avrora.stack.StateTransitionGraph.Edge
type - Variable in class avrora.util.ClassMap
  The `type` field stores a string that represents the name of the "type" that this map contains.
typename - Variable in class avrora.core.isdl.ast.ConversionExpr
  The `typename` field stores a reference to the name of the map whose element is being accessed.

## U

UBRR0H - Static variable in interface avrora.stack.IORegisterConstants
UBRR0L - Static variable in interface avrora.stack.IORegisterConstants
UBRR1H - Static variable in interface avrora.stack.IORegisterConstants
UBRR1L - Static variable in interface avrora.stack.IORegisterConstants
UCSR0A - Static variable in interface avrora.stack.IORegisterConstants
UCSR0B - Static variable in interface avrora.stack.IORegisterConstants
UCSR0C - Static variable in interface avrora.stack.IORegisterConstants
UCSR1A - Static variable in interface avrora.stack.IORegisterConstants
UCSR1B - Static variable in interface avrora.stack.IORegisterConstants
UCSR1C - Static variable in interface avrora.stack.IORegisterConstants
UDR0 - Static variable in interface avrora.stack.IORegisterConstants
UDR1 - Static variable in interface avrora.stack.IORegisterConstants
UID - Variable in class avrora.stack.StateCache.State
UNKNOWN - Static variable in class avrora.stack.AbstractArithmetic
  The `UNKNOWN` field represents the abstract value where none of the bits are known.
UNKNOWN - Static variable in class avrora.stack.isea.ISEValue
UNUSED - Static variable in class avrora.sim.mcu.RegisterLayout
UPDATE_NODE_ID - Variable in class avrora.sim.types.SensorSimulation
USART - class avrora.sim.mcu.USART.
  The USART class implements a Universal Synchronous Asynchronous Receiver/Transmitter, which is a serial device on the Atmel microcontrollers.
USART(String, AtmelMicrocontroller) - Constructor for class avrora.sim.mcu.USART
USART.ControlRegisterA - class avrora.sim.mcu.USART.ControlRegisterA.
  UCSRnA (`ControlRegisterA`) is one of three control/status registers for the USART.
USART.ControlRegisterA() - Constructor for class avrora.sim.mcu.USART.ControlRegisterA
USART.ControlRegisterB - class avrora.sim.mcu.USART.ControlRegisterB.
  UCSRnB (`ControlRegisterB`) is one of three control/status registers for the USART.
USART.ControlRegisterC - class avrora.sim.mcu.USART.ControlRegisterC.
  UCSRnC (`ControlRegisterC`) is one of three control/status registers for the USART.
USART.ControlRegisterC() - Constructor for class avrora.sim.mcu.USART.ControlRegisterC
USART.DataRegister - class avrora.sim.mcu.USART.DataRegister.
  The `DataRegister` class represents a Transmit Data Buffer Register for a USART.
USART.Frame - class avrora.sim.mcu.USART.Frame.
  A `USARTFrame` is a representation of the serial frames being passed between the USART and a connected device.
USART.Frame(byte, boolean, int) - Constructor for class avrora.sim.mcu.USART.Frame
  Constructor for a USARTFrame.
USART.Receiver - class avrora.sim.mcu.USART.Receiver.
USART.Receiver() - Constructor for class avrora.sim.mcu.USART.Receiver
USART.Receiver.Receive - class avrora.sim.mcu.USART.Receiver.Receive.
USART.Receiver.Receive() - Constructor for class avrora.sim.mcu.USART.Receiver.Receive
USART.SerialPrinter - class avrora.sim.mcu.USART.SerialPrinter.
  A simple implementation of the USARTDevice interface that connects to a USART on the processor.
USART.Transmitter - class avrora.sim.mcu.USART.Transmitter.
USART.Transmitter() - Constructor for class avrora.sim.mcu.USART.Transmitter
USART.Transmitter.Transmit - class avrora.sim.mcu.USART.Transmitter.Transmit.
USART.Transmitter.Transmit() - Constructor for class avrora.sim.mcu.USART.Transmitter.Transmit
USART.UBRRnHReg - class avrora.sim.mcu.USART.UBRRnHReg.
  The high byte of the Baud Rate register.
USART.UBRRnHReg() - Constructor for class avrora.sim.mcu.USART.UBRRnHReg
USART.UBRRnLReg - class avrora.sim.mcu.USART.UBRRnLReg.
  The low byte of the Baud Rate register.
USART.UBRRnLReg() - Constructor for class avrora.sim.mcu.USART.UBRRnLReg
USART.USARTDevice - interface avrora.sim.mcu.USART.USARTDevice.
  The `USARTDevice` interface describes USARTs and other serial devices which can be connected to the USART.
USE_ISEA - Variable in class avrora.actions.AnalyzeStackAction
USE_ISEA - Static variable in class avrora.stack.Analyzer
USE_REGISTER_ARRAY - Variable in class avrora.sim.dbbc.DBBC
Un_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
UnaryExpr() - Method in class avrora.syntax.atmel.AtmelParser
UnaryExpr() - Method in class avrora.syntax.gas.GASParser
UnknownInstruction(AbstractToken) - Method in class avrora.syntax.AVRErrorReporter
UnknownRegister(AbstractToken) - Method in class avrora.syntax.AVRErrorReporter
UnknownVariable(AbstractToken) - Method in class avrora.syntax.AVRErrorReporter
UpdateLineColumn(char) - Method in class avrora.core.isdl.parser.SimpleCharStream
UpdateLineColumn(char) - Method in class avrora.syntax.atmel.SimpleCharStream
UpdateLineColumn(char) - Method in class avrora.syntax.gas.SimpleCharStream
UpdateLineColumn(char) - Method in class avrora.syntax.objdump.SimpleCharStream
UpdateLineColumn(char) - Method in class avrora.test.probes.SimpleCharStream
ubyte(byte) - Static method in class avrora.util.Arithmetic
uhigh(char) - Static method in class avrora.util.Arithmetic
uhigh(short) - Static method in class avrora.util.Arithmetic
ulow(char) - Static method in class avrora.util.Arithmetic
ulow(short) - Static method in class avrora.util.Arithmetic
unexpected(Throwable) - Static method in class avrora.Avrora
  The `unexpected()` method is a utility method that wraps an unexpected exception so that it can be throw again and reported later.
unflag() - Method in class avrora.sim.mcu.ATMegaFamily.FlagBit
unflagBit(int) - Method in class avrora.sim.mcu.ATMegaFamily.FlagRegister
unimplemented() - Static method in class avrora.Avrora
  The `unimplemented()` method is a utility that constructs a `InternalError` instance.
unindent() - Method in class avrora.util.Printer
unindent() - Method in class avrora.util.Verbose.Printer
unknownOptions() - Method in class avrora.util.Options
unknownValues - Variable in class avrora.util.Options
unpause() - Method in class avrora.gui.SimTimeEvents.PauseEvent
unpost(int) - Method in class avrora.sim.InterruptTable
  The `unpost()` method is called by the interpreter when an interrupt is unposted.
update() - Method in class avrora.gui.VisualStackMonitor.SPMon
update(Instr[]) - Method in interface avrora.sim.CodeSegment.CodeSharer
update() - Method in class avrora.sim.CodeSegment
  The `update()` method is called when the program attempts an update to the flash memory through the SPM instruction.
update(byte[]) - Method in interface avrora.sim.Segment.Sharer
update() - Method in class avrora.sim.mcu.RegisterSet.Field
update() - Method in class avrora.sim.mcu.ReprogrammableCodeSegment
  The `update()` method is called by the interpreter when the program executes an instruction that updates the program memory.
updateDataAndPaint() - Method in interface avrora.gui.VisualMonitor
  This function should be called by the thread that periodically repaints the monitors chalkaboard.
updateDataAndPaint() - Method in class avrora.gui.VisualRadioMonitor.VisualMonitor
updateDataAndPaint() - Method in class avrora.gui.VisualRegMonitor.VisualMonitor
updateFrequency() - Method in class avrora.sim.radio.CC1000Radio.FrequencyRegister
updateFrequencySeparation() - Method in class avrora.sim.radio.CC1000Radio.FrequencySeparationRegister
updateHorzBar() - Method in class avrora.gui.GraphEvents
  This function updates the scroll bar as new numbers are added to the vector or if we decided to jump to a certian value if the paramter is true, it will set the scroll bar to be the new max value...otherwise it just keeps value to whatver it used to be Synchronized because GUI thread and paintthread will access the horz bar
updateHorzBar() - Method in class avrora.gui.GraphNumbers
  This function updates the scroll bar as new numbers are added to the vector or if we decided to jump to a certian value Synchronized because GUI thread and paintthread will access the horz bar
updateMenuBar() - Method in class avrora.gui.SimMenuBar
  This physically creates the look of the menu bar.
useByteAddresses - Variable in class avrora.syntax.Module
useColors - Static variable in class avrora.util.Terminal
userError(String) - Static method in class avrora.Avrora
  The `userError()` method constructs and throws an error in situations that are likely due to user error.
userError(String, String) - Static method in class avrora.Avrora
  The `userError()` method constructs and throws an error in situations that are likely due to user error.
uword(byte, byte) - Static method in class avrora.sim.GenInterpreter
uword(byte, byte) - Static method in class avrora.util.Arithmetic

## V

V - Variable in class avrora.sim.BaseInterpreter
VALUE_SCALE_WIDTH - Static variable in class avrora.gui.GraphNumbers
VBG_LEVEL - Static variable in class avrora.sim.mcu.ADC
VERBOSE - Static variable in class avrora.Main
VMA - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
ValueItem - class avrora.util.help.ValueItem.
  The `ValueItem` method represents a help item that is used in a list.
ValueItem(int, String, String, String) - Constructor for class avrora.util.help.ValueItem
  The constructor for the `ValueItem` class creates a new instance of this help item for the specified option and option value, with the given help text.
VarAssignEnd(Token) - Method in class avrora.core.isdl.parser.ISDLParser
VarAssignStmt - class avrora.core.isdl.ast.VarAssignStmt.
  The `VarAssignStmt` class represents an assignment to a local or global variable within the IR for an instruction or a subroutine.
VarAssignStmt(Token, Expr) - Constructor for class avrora.core.isdl.ast.VarAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarAssignStmt(String, Expr) - Constructor for class avrora.core.isdl.ast.VarAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarAssignment() - Method in class avrora.core.isdl.parser.ISDLParser
VarBitAssignStmt - class avrora.core.isdl.ast.VarBitAssignStmt.
  The `VarBitAssignStmt` class represents an assignment to a single bit within a local or global variable.
VarBitAssignStmt(Token, Expr, Expr) - Constructor for class avrora.core.isdl.ast.VarBitAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarBitAssignStmt(String, Expr, Expr) - Constructor for class avrora.core.isdl.ast.VarBitAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarBitRangeAssignStmt - class avrora.core.isdl.ast.VarBitRangeAssignStmt.
  The `VarBitRangeAssignStmt` method represents an assignment to a range of bits within a local or global variable.
VarBitRangeAssignStmt(Token, Token, Token, Expr) - Constructor for class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarBitRangeAssignStmt(Token, int, int, Expr) - Constructor for class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarBitRangeAssignStmt(String, int, int, Expr) - Constructor for class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The constructor for the `VarAssignStmt` class simply initializes the internal references to the internal members of this assignment.
VarExpr - class avrora.core.isdl.ast.VarExpr.
  The `VarExpr` class represents an expression in the IR that is a use of a local or global variable.
VarExpr(Token) - Constructor for class avrora.core.isdl.ast.VarExpr
  The constructor for the `VarExpr` class simply initializes the reference to the name of the variable.
VarExpr(String) - Constructor for class avrora.core.isdl.ast.VarExpr
  The constructor for the `VarExpr` class simply initializes the reference to the name of the variable.
VarUse() - Method in class avrora.core.isdl.parser.ISDLParser
Verbose - class avrora.util.Verbose.
  The `Verbose` class is used to get instances of `Verbose.Printer` for reporting the internal operations of parts of Avrora.
Verbose() - Constructor for class avrora.util.Verbose
Verbose.Printer - class avrora.util.Verbose.Printer.
Version - class avrora.Version.
  The `Version` class represents a version number, including the major version, the commit number, as well as the date and time of the last commit.
Version() - Constructor for class avrora.Version
VisualMonitor - interface avrora.gui.VisualMonitor.
  The `VisualMonitor` class represents a monitor attached to a `Simulator` instance.
VisualRadioMonitor - class avrora.gui.VisualRadioMonitor.
  This is a prototype for a "global monitor."
VisualRadioMonitor() - Constructor for class avrora.gui.VisualRadioMonitor
  The constructor for the `VisualPCMonitor` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
VisualRadioMonitor.VisualMonitor - class avrora.gui.VisualRadioMonitor.VisualMonitor.
VisualRegMonitor - class avrora.gui.VisualRegMonitor.
  The `VisualRegMonitor` class is a monitor that tracks the current value of a register
VisualRegMonitor() - Constructor for class avrora.gui.VisualRegMonitor
  The constructor for the `StackMonitor` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
VisualRegMonitor.VisualMonitor - class avrora.gui.VisualRegMonitor.VisualMonitor.
  The `Monitor` class implements a monitor for the stack height that inserts a probe after every instruction in the program and checks the stack height after each instruction is executed.
VisualStackMonitor - class avrora.gui.VisualStackMonitor.
  The `VisualStackMonitor` class is a monitor that tracks the current value of the PC and displays it visually
VisualStackMonitor() - Constructor for class avrora.gui.VisualStackMonitor
  The constructor for the `VisualPCMonitor` class builds a new `MonitorFactory` capable of creating monitors for each `Simulator` instance passed to the `newMonitor()` method.
VisualStackMonitor.SPMon - class avrora.gui.VisualStackMonitor.SPMon.
vSync - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
value - Variable in class avrora.core.Instr.InvalidImmediate
  The `value` field stores the actual value that was passed during the attempeted construction of this instruction.
value - Variable in class avrora.core.isdl.OperandDecl.RegisterEncoding
value - Variable in class avrora.core.isdl.ast.Literal.BoolExpr
  The `value` class stores the constant boolean value of this literal.
value - Variable in class avrora.core.isdl.ast.Literal.IntExpr
  The `value` class stores the constant integer value of this literal.
value - Variable in class avrora.core.isdl.dep.StateUse.BitUse
value - Variable in class avrora.sim.RWRegister
value - Variable in class avrora.sim.Segment
value - Variable in class avrora.sim.mcu.RegisterSet.Field
value - Variable in class avrora.sim.mcu.USART.Frame
value - Variable in class avrora.sim.radio.CC1000Radio.RadioRegister
value - Variable in class avrora.syntax.Expr.CharLiteral
value - Variable in class avrora.syntax.Expr.Constant
value - Variable in class avrora.syntax.Expr.StringLiteral
value - Variable in class avrora.util.Option.Bool
value - Variable in class avrora.util.Option.Double
value - Variable in class avrora.util.Option.List
value - Variable in class avrora.util.Option.Long
value - Variable in class avrora.util.Option.Str
value - Variable in class avrora.util.profiling.TimedMeasurements.Measurement
varName(String) - Method in class avrora.core.isdl.gen.Inliner
varName(Token) - Method in class avrora.core.isdl.gen.Inliner
variable - Variable in class avrora.core.isdl.ast.VarAssignStmt
  The `variable` field stores a reference to the token that represents the name of the variable being assigned to.
variable - Variable in class avrora.core.isdl.ast.VarBitAssignStmt
  The `variable` field stores a reference to the token that represents the name of the variable being assigned to.
variable - Variable in class avrora.core.isdl.ast.VarBitRangeAssignStmt
  The `variable` field stores a reference to the token that represents the name of the variable being assigned to.
variable - Variable in class avrora.core.isdl.ast.VarExpr
  The `variable` field stores a reference to the token representing the name of the variable being accessed.
variableMap - Variable in class avrora.core.isdl.gen.InterpreterGenerator
variant - Variable in class avrora.core.InstrProperties
  The `variant` field stores an immutable reference to the variant of the instruction as a string.
variant - Variable in class avrora.syntax.Item.Instruction
varname - Variable in class avrora.core.isdl.gen.InterpreterGenerator.ArrayMap
vec - Variable in class avrora.sim.util.InterruptScheduler.ScheduledInterrupt
visit(Instr.ADC) - Method in interface avrora.core.InstrVisitor
visit(Instr.ADD) - Method in interface avrora.core.InstrVisitor
visit(Instr.ADIW) - Method in interface avrora.core.InstrVisitor
visit(Instr.AND) - Method in interface avrora.core.InstrVisitor
visit(Instr.ANDI) - Method in interface avrora.core.InstrVisitor
visit(Instr.ASR) - Method in interface avrora.core.InstrVisitor
visit(Instr.BCLR) - Method in interface avrora.core.InstrVisitor
visit(Instr.BLD) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRBC) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRBS) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRCC) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRCS) - Method in interface avrora.core.InstrVisitor
visit(Instr.BREAK) - Method in interface avrora.core.InstrVisitor
visit(Instr.BREQ) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRGE) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRHC) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRHS) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRID) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRIE) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRLO) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRLT) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRMI) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRNE) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRPL) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRSH) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRTC) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRTS) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRVC) - Method in interface avrora.core.InstrVisitor
visit(Instr.BRVS) - Method in interface avrora.core.InstrVisitor
visit(Instr.BSET) - Method in interface avrora.core.InstrVisitor
visit(Instr.BST) - Method in interface avrora.core.InstrVisitor
visit(Instr.CALL) - Method in interface avrora.core.InstrVisitor
visit(Instr.CBI) - Method in interface avrora.core.InstrVisitor
visit(Instr.CBR) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLC) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLH) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLI) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLN) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLR) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLS) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLT) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLV) - Method in interface avrora.core.InstrVisitor
visit(Instr.CLZ) - Method in interface avrora.core.InstrVisitor
visit(Instr.COM) - Method in interface avrora.core.InstrVisitor
visit(Instr.CP) - Method in interface avrora.core.InstrVisitor
visit(Instr.CPC) - Method in interface avrora.core.InstrVisitor
visit(Instr.CPI) - Method in interface avrora.core.InstrVisitor
visit(Instr.CPSE) - Method in interface avrora.core.InstrVisitor
visit(Instr.DEC) - Method in interface avrora.core.InstrVisitor
visit(Instr.EICALL) - Method in interface avrora.core.InstrVisitor
visit(Instr.EIJMP) - Method in interface avrora.core.InstrVisitor
visit(Instr.ELPM) - Method in interface avrora.core.InstrVisitor
visit(Instr.ELPMD) - Method in interface avrora.core.InstrVisitor
visit(Instr.ELPMPI) - Method in interface avrora.core.InstrVisitor
visit(Instr.EOR) - Method in interface avrora.core.InstrVisitor
visit(Instr.FMUL) - Method in interface avrora.core.InstrVisitor
visit(Instr.FMULS) - Method in interface avrora.core.InstrVisitor
visit(Instr.FMULSU) - Method in interface avrora.core.InstrVisitor
visit(Instr.ICALL) - Method in interface avrora.core.InstrVisitor
visit(Instr.IJMP) - Method in interface avrora.core.InstrVisitor
visit(Instr.IN) - Method in interface avrora.core.InstrVisitor
visit(Instr.INC) - Method in interface avrora.core.InstrVisitor
visit(Instr.JMP) - Method in interface avrora.core.InstrVisitor
visit(Instr.LD) - Method in interface avrora.core.InstrVisitor
visit(Instr.LDD) - Method in interface avrora.core.InstrVisitor
visit(Instr.LDI) - Method in interface avrora.core.InstrVisitor
visit(Instr.LDPD) - Method in interface avrora.core.InstrVisitor
visit(Instr.LDPI) - Method in interface avrora.core.InstrVisitor
visit(Instr.LDS) - Method in interface avrora.core.InstrVisitor
visit(Instr.LPM) - Method in interface avrora.core.InstrVisitor
visit(Instr.LPMD) - Method in interface avrora.core.InstrVisitor
visit(Instr.LPMPI) - Method in interface avrora.core.InstrVisitor
visit(Instr.LSL) - Method in interface avrora.core.InstrVisitor
visit(Instr.LSR) - Method in interface avrora.core.InstrVisitor
visit(Instr.MOV) - Method in interface avrora.core.InstrVisitor
visit(Instr.MOVW) - Method in interface avrora.core.InstrVisitor
visit(Instr.MUL) - Method in interface avrora.core.InstrVisitor
visit(Instr.MULS) - Method in interface avrora.core.InstrVisitor
visit(Instr.MULSU) - Method in interface avrora.core.InstrVisitor
visit(Instr.NEG) - Method in interface avrora.core.InstrVisitor
visit(Instr.NOP) - Method in interface avrora.core.InstrVisitor
visit(Instr.OR) - Method in interface avrora.core.InstrVisitor
visit(Instr.ORI) - Method in interface avrora.core.InstrVisitor
visit(Instr.OUT) - Method in interface avrora.core.InstrVisitor
visit(Instr.POP) - Method in interface avrora.core.InstrVisitor
visit(Instr.PUSH) - Method in interface avrora.core.InstrVisitor
visit(Instr.RCALL) - Method in interface avrora.core.InstrVisitor
visit(Instr.RET) - Method in interface avrora.core.InstrVisitor
visit(Instr.RETI) - Method in interface avrora.core.InstrVisitor
visit(Instr.RJMP) - Method in interface avrora.core.InstrVisitor
visit(Instr.ROL) - Method in interface avrora.core.InstrVisitor
visit(Instr.ROR) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBC) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBCI) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBI) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBIC) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBIS) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBIW) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBR) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBRC) - Method in interface avrora.core.InstrVisitor
visit(Instr.SBRS) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEC) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEH) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEI) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEN) - Method in interface avrora.core.InstrVisitor
visit(Instr.SER) - Method in interface avrora.core.InstrVisitor
visit(Instr.SES) - Method in interface avrora.core.InstrVisitor
visit(Instr.SET) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEV) - Method in interface avrora.core.InstrVisitor
visit(Instr.SEZ) - Method in interface avrora.core.InstrVisitor
visit(Instr.SLEEP) - Method in interface avrora.core.InstrVisitor
visit(Instr.SPM) - Method in interface avrora.core.InstrVisitor
visit(Instr.ST) - Method in interface avrora.core.InstrVisitor
visit(Instr.STD) - Method in interface avrora.core.InstrVisitor
visit(Instr.STPD) - Method in interface avrora.core.InstrVisitor
visit(Instr.STPI) - Method in interface avrora.core.InstrVisitor
visit(Instr.STS) - Method in interface avrora.core.InstrVisitor
visit(Instr.SUB) - Method in interface avrora.core.InstrVisitor
visit(Instr.SUBI) - Method in interface avrora.core.InstrVisitor
visit(Instr.SWAP) - Method in interface avrora.core.InstrVisitor
visit(Instr.TST) - Method in interface avrora.core.InstrVisitor
visit(Instr.WDR) - Method in interface avrora.core.InstrVisitor
visit(EncodingDecl) - Method in interface avrora.core.isdl.Architecture.EncodingVisitor
visit(InstrDecl) - Method in interface avrora.core.isdl.Architecture.InstrVisitor
visit(OperandDecl) - Method in interface avrora.core.isdl.Architecture.OperandVisitor
visit(IfStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(CallStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(DeclStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(MapAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(MapBitAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(MapBitRangeAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(ReturnStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(VarAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(VarBitAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(VarBitRangeAssignStmt) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visit(SubroutineDecl) - Method in interface avrora.core.isdl.Architecture.SubroutineVisitor
visit(Arith.AddExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.AndExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.CompExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.DivExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.MulExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.NegExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.OrExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.ShiftLeftExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.ShiftRightExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.SubExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.XorExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(BitExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(BitRangeExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(CallExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(ConversionExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Literal.BoolExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Literal.IntExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.AndExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.EquExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.GreaterEquExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.GreaterExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.LessEquExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.LessExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.NequExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.NotExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.OrExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Logical.XorExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(MapExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(VarExpr, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visit(Arith.AddExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.AndExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.CompExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.DivExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.MulExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.NegExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.OrExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.ShiftLeftExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.ShiftRightExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.SubExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.XorExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(BitExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(BitRangeExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(CallExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(ConversionExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Literal.BoolExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Literal.IntExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.AndExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.EquExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.GreaterEquExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.GreaterExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.LessEquExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.LessExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.NequExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.NotExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.OrExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Logical.XorExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(MapExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(VarExpr, Object) - Method in interface avrora.core.isdl.ast.CodeRebuilder
visit(Arith.AddExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.AndExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.CompExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.DivExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.MulExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.NegExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.OrExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.ShiftLeftExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.ShiftRightExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.SubExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.XorExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(BitExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(BitRangeExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(CallExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(ConversionExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Literal.BoolExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Literal.IntExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.AndExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.EquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.GreaterEquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.GreaterExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.LessEquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.LessExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.NequExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.NotExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.OrExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Logical.XorExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(MapExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(VarExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.Default
visit(Arith.AddExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.AndExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.CompExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.DivExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.MulExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.NegExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.OrExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.ShiftLeftExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.ShiftRightExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.SubExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.XorExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(BitExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(BitRangeExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(CallExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(ConversionExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Literal.BoolExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Literal.IntExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.AndExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.EquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.GreaterEquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.GreaterExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.LessEquExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.LessExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.NequExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.NotExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.OrExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Logical.XorExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(MapExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(VarExpr) - Method in class avrora.core.isdl.ast.CodeVisitor.DepthFirst
visit(Arith.AddExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.AndExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.CompExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.DivExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.MulExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.NegExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.OrExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.ShiftLeftExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.ShiftRightExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.SubExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.XorExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(BitExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(BitRangeExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(CallExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(ConversionExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Literal.BoolExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Literal.IntExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.AndExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.EquExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.GreaterEquExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.GreaterExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.LessEquExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.LessExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.NequExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.NotExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.OrExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Logical.XorExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(MapExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(VarExpr) - Method in interface avrora.core.isdl.ast.CodeVisitor
visit(Arith.BinOp) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(Arith.UnOp) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(BitExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(BitRangeExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(CallExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(ConversionExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(Literal) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(Logical.BinOp) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(Logical.UnOp) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(MapExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(VarExpr) - Method in class avrora.core.isdl.ast.ExprVisitor.DepthFirst
visit(Arith.BinOp) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(Arith.UnOp) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(BitExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(BitRangeExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(CallExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(ConversionExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(Literal) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(Logical.BinOp) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(Logical.UnOp) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(MapExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(VarExpr) - Method in interface avrora.core.isdl.ast.ExprVisitor
visit(CallStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(CommentStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(DeclStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(IfStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(MapAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(MapBitAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(MapBitRangeAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(ReturnStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(VarAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(VarBitAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(VarBitRangeAssignStmt, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visit(CallStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(CommentStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(DeclStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(IfStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(MapAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(MapBitAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(MapBitRangeAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(ReturnStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(VarAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(VarBitAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(VarBitRangeAssignStmt, Object) - Method in interface avrora.core.isdl.ast.StmtRebuilder
visit(CallStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(CommentStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(DeclStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(IfStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(MapAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(MapBitAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(MapBitRangeAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(ReturnStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(VarAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(VarBitAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(VarBitRangeAssignStmt) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visit(CallStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(CommentStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(DeclStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(IfStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(MapAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(MapBitAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(MapBitRangeAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(ReturnStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(VarAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(VarBitAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(VarBitRangeAssignStmt) - Method in interface avrora.core.isdl.ast.StmtVisitor
visit(MapExpr, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
visit(CallExpr, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
visit(MapAssignStmt, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
visit(MapBitAssignStmt, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
visit(MapBitRangeAssignStmt, Object) - Method in class avrora.core.isdl.gen.Canonicalizer
visit(Arith.AddExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.AndExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.CompExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.DivExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.MulExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.NegExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.OrExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.ShiftLeftExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.ShiftRightExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.SubExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Arith.XorExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(BitExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(BitRangeExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(CallExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(ConversionExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Literal.BoolExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Literal.IntExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.AndExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.EquExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.GreaterEquExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.GreaterExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.LessEquExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.LessExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.NequExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.NotExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.OrExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(Logical.XorExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(MapExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(VarExpr) - Method in class avrora.core.isdl.gen.CodemapGenerator.ExprGenerator
visit(CallStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(CommentStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(DeclStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(IfStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(MapAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(MapBitAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(MapBitRangeAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(ReturnStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(VarAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(VarBitAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(VarBitRangeAssignStmt) - Method in class avrora.core.isdl.gen.CodemapGenerator.StmtGenerator
visit(InstrDecl) - Method in class avrora.core.isdl.gen.CodemapGenerator
visit(DeclStmt, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(VarAssignStmt, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(VarBitRangeAssignStmt, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(VarBitAssignStmt, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(MapAssignStmt, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(VarExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(BitExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(BitRangeExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.AddExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.AndExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.CompExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.DivExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.MulExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.NegExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.OrExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.ShiftLeftExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.ShiftRightExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.SubExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Arith.XorExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Literal.BoolExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Literal.IntExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.AndExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.EquExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.GreaterEquExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.GreaterExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.LessEquExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.LessExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.NequExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.NotExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.OrExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(Logical.XorExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(MapExpr, Object) - Method in class avrora.core.isdl.gen.ConstantPropagator
visit(IfStmt, Object) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
visit(DeclStmt, Object) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
visit(VarAssignStmt, Object) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
visit(VarExpr, Object) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
visit(InstrDecl) - Method in class avrora.core.isdl.gen.DisassemblerGenerator
visit(InstrDecl) - Method in class avrora.core.isdl.gen.DisassemblerTestGenerator
visit(CallStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(VarAssignStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(VarBitAssignStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(VarBitRangeAssignStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(DeclStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(ReturnStmt, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(CallExpr, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(VarExpr, Object) - Method in class avrora.core.isdl.gen.Inliner
visit(OperandDecl) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(EncodingDecl) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(InstrDecl) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(SubroutineDecl) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(VarBitAssignStmt) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(VarBitRangeAssignStmt) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(BitExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(BitRangeExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(Logical.AndExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(Logical.OrExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(Logical.XorExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(Arith.XorExpr) - Method in class avrora.core.isdl.gen.InterpreterGenerator
visit(CallExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(MapExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(ConversionExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(VarExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(MapAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(MapBitAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(MapBitRangeAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(CallStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(CommentStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(IfStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(ReturnStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(VarBitAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(VarBitRangeAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(DeclStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(VarAssignStmt) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.AddExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.AndExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.CompExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.DivExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.MulExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.NegExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.OrExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.ShiftLeftExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.ShiftRightExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.SubExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Arith.XorExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Literal.BoolExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Literal.IntExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.AndExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.EquExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.GreaterEquExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.GreaterExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.LessEquExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.LessExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.NequExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.NotExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.OrExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Logical.XorExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(BitExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(BitRangeExpr) - Method in class avrora.core.isdl.gen.PrettyPrinter
visit(Instr.ADC) - Method in class avrora.sim.GenInterpreter
visit(Instr.ADD) - Method in class avrora.sim.GenInterpreter
visit(Instr.ADIW) - Method in class avrora.sim.GenInterpreter
visit(Instr.AND) - Method in class avrora.sim.GenInterpreter
visit(Instr.ANDI) - Method in class avrora.sim.GenInterpreter
visit(Instr.ASR) - Method in class avrora.sim.GenInterpreter
visit(Instr.BCLR) - Method in class avrora.sim.GenInterpreter
visit(Instr.BLD) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRBC) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRBS) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRCC) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRCS) - Method in class avrora.sim.GenInterpreter
visit(Instr.BREAK) - Method in class avrora.sim.GenInterpreter
visit(Instr.BREQ) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRGE) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRHC) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRHS) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRID) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRIE) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRLO) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRLT) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRMI) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRNE) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRPL) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRSH) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRTC) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRTS) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRVC) - Method in class avrora.sim.GenInterpreter
visit(Instr.BRVS) - Method in class avrora.sim.GenInterpreter
visit(Instr.BSET) - Method in class avrora.sim.GenInterpreter
visit(Instr.BST) - Method in class avrora.sim.GenInterpreter
visit(Instr.CALL) - Method in class avrora.sim.GenInterpreter
visit(Instr.CBI) - Method in class avrora.sim.GenInterpreter
visit(Instr.CBR) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLC) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLH) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLI) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLN) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLR) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLS) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLT) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLV) - Method in class avrora.sim.GenInterpreter
visit(Instr.CLZ) - Method in class avrora.sim.GenInterpreter
visit(Instr.COM) - Method in class avrora.sim.GenInterpreter
visit(Instr.CP) - Method in class avrora.sim.GenInterpreter
visit(Instr.CPC) - Method in class avrora.sim.GenInterpreter
visit(Instr.CPI) - Method in class avrora.sim.GenInterpreter
visit(Instr.CPSE) - Method in class avrora.sim.GenInterpreter
visit(Instr.DEC) - Method in class avrora.sim.GenInterpreter
visit(Instr.EICALL) - Method in class avrora.sim.GenInterpreter
visit(Instr.EIJMP) - Method in class avrora.sim.GenInterpreter
visit(Instr.ELPM) - Method in class avrora.sim.GenInterpreter
visit(Instr.ELPMD) - Method in class avrora.sim.GenInterpreter
visit(Instr.ELPMPI) - Method in class avrora.sim.GenInterpreter
visit(Instr.EOR) - Method in class avrora.sim.GenInterpreter
visit(Instr.FMUL) - Method in class avrora.sim.GenInterpreter
visit(Instr.FMULS) - Method in class avrora.sim.GenInterpreter
visit(Instr.FMULSU) - Method in class avrora.sim.GenInterpreter
visit(Instr.ICALL) - Method in class avrora.sim.GenInterpreter
visit(Instr.IJMP) - Method in class avrora.sim.GenInterpreter
visit(Instr.IN) - Method in class avrora.sim.GenInterpreter
visit(Instr.INC) - Method in class avrora.sim.GenInterpreter
visit(Instr.JMP) - Method in class avrora.sim.GenInterpreter
visit(Instr.LD) - Method in class avrora.sim.GenInterpreter
visit(Instr.LDD) - Method in class avrora.sim.GenInterpreter
visit(Instr.LDI) - Method in class avrora.sim.GenInterpreter
visit(Instr.LDPD) - Method in class avrora.sim.GenInterpreter
visit(Instr.LDPI) - Method in class avrora.sim.GenInterpreter
visit(Instr.LDS) - Method in class avrora.sim.GenInterpreter
visit(Instr.LPM) - Method in class avrora.sim.GenInterpreter
visit(Instr.LPMD) - Method in class avrora.sim.GenInterpreter
visit(Instr.LPMPI) - Method in class avrora.sim.GenInterpreter
visit(Instr.LSL) - Method in class avrora.sim.GenInterpreter
visit(Instr.LSR) - Method in class avrora.sim.GenInterpreter
visit(Instr.MOV) - Method in class avrora.sim.GenInterpreter
visit(Instr.MOVW) - Method in class avrora.sim.GenInterpreter
visit(Instr.MUL) - Method in class avrora.sim.GenInterpreter
visit(Instr.MULS) - Method in class avrora.sim.GenInterpreter
visit(Instr.MULSU) - Method in class avrora.sim.GenInterpreter
visit(Instr.NEG) - Method in class avrora.sim.GenInterpreter
visit(Instr.NOP) - Method in class avrora.sim.GenInterpreter
visit(Instr.OR) - Method in class avrora.sim.GenInterpreter
visit(Instr.ORI) - Method in class avrora.sim.GenInterpreter
visit(Instr.OUT) - Method in class avrora.sim.GenInterpreter
visit(Instr.POP) - Method in class avrora.sim.GenInterpreter
visit(Instr.PUSH) - Method in class avrora.sim.GenInterpreter
visit(Instr.RCALL) - Method in class avrora.sim.GenInterpreter
visit(Instr.RET) - Method in class avrora.sim.GenInterpreter
visit(Instr.RETI) - Method in class avrora.sim.GenInterpreter
visit(Instr.RJMP) - Method in class avrora.sim.GenInterpreter
visit(Instr.ROL) - Method in class avrora.sim.GenInterpreter
visit(Instr.ROR) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBC) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBCI) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBI) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBIC) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBIS) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBIW) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBR) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBRC) - Method in class avrora.sim.GenInterpreter
visit(Instr.SBRS) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEC) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEH) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEI) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEN) - Method in class avrora.sim.GenInterpreter
visit(Instr.SER) - Method in class avrora.sim.GenInterpreter
visit(Instr.SES) - Method in class avrora.sim.GenInterpreter
visit(Instr.SET) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEV) - Method in class avrora.sim.GenInterpreter
visit(Instr.SEZ) - Method in class avrora.sim.GenInterpreter
visit(Instr.SLEEP) - Method in class avrora.sim.GenInterpreter
visit(Instr.SPM) - Method in class avrora.sim.GenInterpreter
visit(Instr.ST) - Method in class avrora.sim.GenInterpreter
visit(Instr.STD) - Method in class avrora.sim.GenInterpreter
visit(Instr.STPD) - Method in class avrora.sim.GenInterpreter
visit(Instr.STPI) - Method in class avrora.sim.GenInterpreter
visit(Instr.STS) - Method in class avrora.sim.GenInterpreter
visit(Instr.SUB) - Method in class avrora.sim.GenInterpreter
visit(Instr.SUBI) - Method in class avrora.sim.GenInterpreter
visit(Instr.SWAP) - Method in class avrora.sim.GenInterpreter
visit(Instr.TST) - Method in class avrora.sim.GenInterpreter
visit(Instr.WDR) - Method in class avrora.sim.GenInterpreter
visit(Instr.ADC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ADD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ADIW) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.AND) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ANDI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ASR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BCLR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BLD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRBC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRBS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRCC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRCS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BREAK) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BREQ) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRGE) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRHC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRHS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRID) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRIE) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRLO) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRLT) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRMI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRNE) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRPL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRSH) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRTC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRTS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRVC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BRVS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BSET) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.BST) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CALL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CBI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CBR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLH) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLN) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLT) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLV) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CLZ) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.COM) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CPC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CPI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.CPSE) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.DEC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.EICALL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.EIJMP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ELPM) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ELPMD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ELPMPI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.EOR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.FMUL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.FMULS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.FMULSU) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ICALL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.IJMP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.IN) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.INC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.JMP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LDD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LDI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LDPD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LDPI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LDS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LPM) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LPMD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LPMPI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LSL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.LSR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.MOV) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.MOVW) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.MUL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.MULS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.MULSU) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.NEG) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.NOP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.OR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ORI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.OUT) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.POP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.PUSH) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.RCALL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.RET) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.RETI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.RJMP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ROL) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ROR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBCI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBIC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBIS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBIW) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBRC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SBRS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEC) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEH) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEN) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SER) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SES) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SET) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEV) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SEZ) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SLEEP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SPM) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.ST) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.STD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.STPD) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.STPI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.STS) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SUB) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SUBI) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.SWAP) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.TST) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(Instr.WDR) - Method in class avrora.sim.dbbc.CodeMap.CodeBuilder
visit(DeclStmt) - Method in class avrora.sim.dbbc.DBBC.CodeGenerator
visit(Instr.ADC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ADD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ADIW) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.AND) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ANDI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ASR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BCLR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BLD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRBC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRBS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRCC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRCS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BREAK) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BREQ) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRGE) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRHC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRHS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRID) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRIE) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRLO) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRLT) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRMI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRNE) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRPL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRSH) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRTC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRTS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRVC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BRVS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BSET) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.BST) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CALL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CBI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CBR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLH) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLN) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLT) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLV) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CLZ) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.COM) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CPC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CPI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.CPSE) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.DEC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.EICALL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.EIJMP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ELPM) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ELPMD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ELPMPI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.EOR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.FMUL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.FMULS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.FMULSU) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ICALL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.IJMP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.IN) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.INC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.JMP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LDD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LDI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LDPD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LDPI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LDS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LPM) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LPMD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LPMPI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LSL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.LSR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.MOV) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.MOVW) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.MUL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.MULS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.MULSU) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.NEG) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.NOP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.OR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ORI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.OUT) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.POP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.PUSH) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.RCALL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.RET) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.RETI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.RJMP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ROL) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ROR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBCI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBIC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBIS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBIW) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBRC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SBRS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEC) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEH) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEN) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SER) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SES) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SET) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEV) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SEZ) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SLEEP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SPM) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ST) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.STD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.STPD) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.STPI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.STS) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SUB) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SUBI) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.SWAP) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.TST) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.WDR) - Method in class avrora.stack.AbstractInterpreter
visit(Instr.ADC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ADD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ADIW) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.AND) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ANDI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ASR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BCLR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BLD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRBC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRBS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRCC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRCS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BREAK) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BREQ) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRGE) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRHC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRHS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRID) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRIE) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRLO) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRLT) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRMI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRNE) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRPL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRSH) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRTC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRTS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRVC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BRVS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BSET) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.BST) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CALL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CBI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CBR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLH) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLN) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLT) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLV) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CLZ) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.COM) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CPC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CPI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.CPSE) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.DEC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.EICALL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.EIJMP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ELPM) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ELPMD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ELPMPI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.EOR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.FMUL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.FMULS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.FMULSU) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ICALL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.IJMP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.IN) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.INC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.JMP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LDD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LDI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LDPD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LDPI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LDS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LPM) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LPMD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LPMPI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LSL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.LSR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.MOV) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.MOVW) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.MUL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.MULS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.MULSU) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.NEG) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.NOP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.OR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ORI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.OUT) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.POP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.PUSH) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.RCALL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.RET) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.RETI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.RJMP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ROL) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ROR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBCI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBIC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBIS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBIW) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBRC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SBRS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEC) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEH) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEN) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SER) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SES) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SET) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEV) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SEZ) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SLEEP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SPM) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.ST) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.STD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.STPD) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.STPI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.STS) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SUB) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SUBI) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.SWAP) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.TST) - Method in class avrora.stack.isea.ISEInterpreter
visit(Instr.WDR) - Method in class avrora.stack.isea.ISEInterpreter
visit(Database) - Method in class avrora.util.profiling.DatabaseVisitor
visit(DataItem) - Method in class avrora.util.profiling.DatabaseVisitor
visitExprList(List, Object) - Method in class avrora.core.isdl.ast.CodeRebuilder.DepthFirst
visitExprList(List) - Method in class avrora.core.isdl.gen.PrettyPrinter
visitStmtList(List) - Method in class avrora.core.isdl.Architecture.PrettyPrinter
visitStmtList(List, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visitStmtList(List) - Method in class avrora.core.isdl.ast.StmtVisitor.DepthFirst
visitStmtList(List, Object) - Method in class avrora.core.isdl.gen.DeadCodeEliminator
visitStmtList(List) - Method in class avrora.core.isdl.gen.PrettyPrinter
visitStmts(List, Object) - Method in class avrora.core.isdl.ast.StmtRebuilder.DepthFirst
visualOptionsPanel - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
visualOptionsPanel - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
visualPanel - Variable in class avrora.gui.VisualRadioMonitor.VisualMonitor
visualPanel - Variable in class avrora.gui.VisualRegMonitor.VisualMonitor
visualSetMaxValue() - Method in class avrora.gui.GraphNumbers
  This is called to get the visual widget that the user can set y-axis max value with.
visualSetStepSize() - Method in class avrora.gui.GraphEvents
  This creates a visual object that the user can interact with to set step size

## W

WATCH - Static variable in interface avrora.test.probes.ProbeParserConstants
WDR - Static variable in interface avrora.syntax.atmel.AtmelParserConstants
WDR - Static variable in interface avrora.syntax.gas.GASParserConstants
WDR - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
WDTCR - Static variable in interface avrora.stack.IORegisterConstants
WGMn0 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
WGMn1 - Static variable in class avrora.sim.mcu.Timer8Bit.ControlRegister
WHEN - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
WHERE - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
WORD - Static variable in interface avrora.syntax.gas.GASParserConstants
WORD - Static variable in interface avrora.syntax.objdump.ObjDumpParserConstants
WORD_SIZE - Static variable in class avrora.core.isdl.gen.DisassemblerGenerator
WatchDeclaration(ProbeTest) - Method in class avrora.test.probes.ProbeParser
WordDirective() - Method in class avrora.syntax.atmel.AtmelParser
WordDirective() - Method in class avrora.syntax.gas.GASParser
WrongNumberOfOperands(AbstractToken, int, int) - Method in class avrora.syntax.AVRErrorReporter
waitForNeighbors(long) - Method in class avrora.sim.clock.IntervalSynchronizer
  The `waitForNeighbors()` method is called from within the execution of a node when that node needs to wait for its neighbors to catch up to it in execution time.
waitForNeighbors(long) - Method in class avrora.sim.clock.StepSynchronizer
  The `waitForNeighbors()` method is called from within the execution of a node when that node needs to wait for its neighbors to catch up to it in execution time.
waitForNeighbors(long) - Method in class avrora.sim.clock.Synchronizer
  The `waitForNeighbors()` method is called from within the execution of a node when that node needs to wait for its neighbors to catch up to it in execution time.
waitForNeighbors(long) - Method in class avrora.sim.types.SingleSimulation.SingleSynchronizer
  The `waitForNeighbors()` method is called from within the execution of a node when that node needs to wait for its neighbors to catch up to it in execution time.
waitSlot - Variable in class avrora.sim.clock.IntervalSynchronizer.SynchEvent
waitSlotList - Variable in class avrora.sim.clock.IntervalSynchronizer
wait_count - Variable in class avrora.sim.clock.IntervalSynchronizer
wakeup() - Method in class avrora.sim.mcu.AtmelMicrocontroller
  The `wakeup()` method is called by the interpreter when the microcontroller is woken from a sleep mode by an interrupt or other event.
wakeup() - Method in interface avrora.sim.mcu.Microcontroller
  The `wakeup()` method wakes the microcontroller from a sleep mode.
wakeupTimes - Static variable in class avrora.sim.mcu.ATMega128
wakeupTimes - Static variable in class avrora.sim.mcu.ATMega16
wakeupTimes - Static variable in class avrora.sim.mcu.ATMega32
watches - Variable in class avrora.sim.ProbedActiveRegister
wcet - Variable in class avrora.sim.dbbc.DBBC.CodeBlock
wcet - Variable in class avrora.sim.dbbc.DBBC.CompiledBlock
wcount - Variable in class avrora.sim.util.MemoryCounter
  The `wcount` field stores the number of writes encountered for this memory location.
wcount - Variable in class avrora.sim.util.MemoryMatrixProfiler
  The `rcount` field stores a two dimensional array that records the write count for each memory location for each instruction.
wcount - Variable in class avrora.sim.util.MemoryProfiler
weight - Variable in class avrora.stack.StateTransitionGraph.Edge
westPinInt - Variable in class avrora.sim.platform.PinConnect.PinNode
westPinRx - Variable in class avrora.sim.platform.PinConnect.PinNode
westPinTx - Variable in class avrora.sim.platform.PinConnect.PinNode
wireInput - Variable in class avrora.sim.platform.PinWire
wireOutput - Variable in class avrora.sim.platform.PinWire
word(byte, byte) - Static method in class avrora.util.Arithmetic
word1 - Variable in class avrora.core.Disassembler.InvalidInstruction
write(int) - Method in class avrora.gui.DebugStream
write(byte) - Method in interface avrora.sim.ActiveRegister
  The `write()` method writes an 8-bit value to the IO register as a byte.
write(byte) - Method in class avrora.sim.ProbedActiveRegister
  The `write()` method writes an 8-bit value to the IO register as a byte.
write(byte) - Method in class avrora.sim.RWRegister
  The `write()` method writes an 8-bit value to the IO register as a byte.
write(int, byte) - Method in class avrora.sim.Segment
  The `write()` method of the segment writes a byte to a location in the segment, firing any watches on the address before and after the write.
write(byte) - Method in class avrora.sim.mcu.ADC.ADCRegister
write(byte) - Method in class avrora.sim.mcu.ADC.ControlRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.DirectionRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.FlagRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.MaskRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.PinRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.PortRegister
write(byte) - Method in class avrora.sim.mcu.ATMegaFamily.Timer0.ASSRRegister
write(boolean) - Method in class avrora.sim.mcu.AtmelMicrocontroller.Pin
write(byte) - Method in class avrora.sim.mcu.EEPROM.EEARHReg
write(byte) - Method in class avrora.sim.mcu.EEPROM.EECRReg
write(boolean) - Method in interface avrora.sim.mcu.Microcontroller.Pin.Output
  The `write()` method is called by the simulator when the program writes a logical level to the pin.
write(int, int) - Method in class avrora.sim.mcu.RegisterSet.Field
write(int) - Method in class avrora.sim.mcu.RegisterSet.Field
write(byte) - Method in class avrora.sim.mcu.RegisterSet.MultiFieldRegister
write(byte) - Method in class avrora.sim.mcu.SPI.SPCRReg
write(byte) - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
write(byte) - Method in class avrora.sim.mcu.Timer16Bit.OCRnxTempHighRegister
write(byte) - Method in class avrora.sim.mcu.Timer16Bit.PairedRegister
write(byte) - Method in class avrora.sim.mcu.Timer16Bit.TCNTnRegister
write(byte) - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
write(byte) - Method in class avrora.sim.mcu.Timer8Bit.ControlRegister
write(byte) - Method in class avrora.sim.mcu.Timer8Bit.TCNTnRegister
write(byte) - Method in class avrora.sim.mcu.USART.ControlRegisterA
write(byte) - Method in class avrora.sim.mcu.USART.ControlRegisterB
write(byte) - Method in class avrora.sim.mcu.USART.ControlRegisterC
write(byte) - Method in class avrora.sim.mcu.USART.DataRegister
write(byte) - Method in class avrora.sim.mcu.USART.UBRRnHReg
write(byte) - Method in class avrora.sim.mcu.USART.UBRRnLReg
write(boolean) - Method in class avrora.sim.platform.ExternalFlash.PA3Output
write(boolean) - Method in class avrora.sim.platform.ExternalFlash.PD3Output
write(boolean) - Method in class avrora.sim.platform.ExternalFlash.PD5Output
write(boolean) - Method in class avrora.sim.platform.LED
write(byte) - Method in class avrora.sim.radio.CC1000Radio.RadioRegister
write(boolean) - Method in class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PALEOutput
write(boolean) - Method in class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PCLKOutput
write(boolean) - Method in class avrora.sim.radio.CC1000Radio.SerialConfigurationInterface.PDATAOutput
write(int, int, long) - Method in class avrora.sim.radio.Channel
  The `write()` method writes a value into the channel, with the given bit length at the given global time.
write(byte[]) - Method in class avrora.util.SectionFile
write(byte[], int, int) - Method in class avrora.util.SectionFile
write(int) - Method in class avrora.util.SectionFile
write16(int, RWRegister, RWRegister) - Static method in class avrora.sim.mcu.AtmelInternalDevice
  Helper function to write a 16-bit value to a pair of registers.
writeBit(int, boolean) - Method in interface avrora.sim.ActiveRegister
  The `writeBit()` method writes a single bit value into the IO register at the specified bit offset.
writeBit(int, boolean) - Method in class avrora.sim.ProbedActiveRegister
  The `writeBit()` method writes a single bit value into the IO register at the specified bit offset.
writeBit(int, boolean) - Method in class avrora.sim.RWRegister
  The `writeBit()` method writes a single bit value into the IO register at the specified bit offset.
writeBit(int, boolean) - Method in class avrora.sim.mcu.ADC.ADCRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ADC.ControlRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.DirectionRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.FlagRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.MaskRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.PinRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.PortRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.ATMegaFamily.Timer0.ASSRRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.EEPROM.EEARHReg
writeBit(int, boolean) - Method in class avrora.sim.mcu.EEPROM.EECRReg
writeBit(int, boolean) - Method in class avrora.sim.mcu.RegisterSet.MultiFieldRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.SPI.SPCRReg
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer16Bit.BufferedRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer16Bit.OCRnxTempHighRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer16Bit.PairedRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer16Bit.TCNTnRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer8Bit.BufferedRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer8Bit.ControlRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.Timer8Bit.TCNTnRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.ControlRegisterA
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.ControlRegisterB
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.ControlRegisterC
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.DataRegister
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.UBRRnHReg
writeBit(int, boolean) - Method in class avrora.sim.mcu.USART.UBRRnLReg
writeBit(int, boolean) - Method in class avrora.sim.radio.CC1000Radio.RadioRegister
writeDataByte(int, byte) - Method in class avrora.sim.BaseInterpreter
  The `writeDataByte()` method writes a value to the data memory (SRAM) of the state.
writeDataByte(ASTNode, int, byte) - Method in class avrora.syntax.Module.Seg
writeDataBytes(ASTNode, int, byte[]) - Method in class avrora.syntax.Module.Seg
writeElement(int, byte) - Method in class avrora.stack.isea.ISEAbstractState
writeError(int, byte) - Method in class avrora.sim.BaseInterpreter.ErrorReporter
writeError(int, byte) - Method in interface avrora.sim.Segment.ErrorReporter
writeFlashByte(int, byte) - Method in class avrora.sim.BaseInterpreter
  The `writeFlashByte()` method updates the flash memory one byte at a time.
writeIORegister(int, byte) - Method in class avrora.stack.isea.ISEInterpreter
writeIORegister(int, byte) - Method in class avrora.stack.isea.ISEState
writeIORegisterByte(int, byte) - Method in class avrora.sim.BaseInterpreter
  The `writeIORegisterByte()` method writes a value to the specified IO register.
writeInstr(Instr, int) - Method in class avrora.core.Program
  The `writeInstr()` method is used to write an instruction to the internal representation of the program at the given address.
writeInstr(int, Instr) - Method in class avrora.sim.CodeSegment
writeInstr(AbstractToken, int, Instr) - Method in class avrora.syntax.Module.Seg
writeLine(String) - Method in class avrora.util.SectionFile
writeMeth - Variable in class avrora.core.isdl.gen.InterpreterGenerator.GetterSetterMap
writeProgramByte(byte, int) - Method in class avrora.core.Program
  The `writeProgramByte()` method writes a byte into the program segment at the specified byte address.
writeProgramBytes(byte[], int) - Method in class avrora.core.Program
  The `writeProgramBytes()` method writes an array of bytes into the program segment at the specified byte address.
writeRegister(Register, byte) - Method in class avrora.stack.isea.ISEInterpreter
writeRegister(Register, byte) - Method in class avrora.stack.isea.ISEState
writeRegisterByte(Register, byte) - Method in class avrora.sim.BaseInterpreter
  The `writeRegisterByte()` method writes a value to a general purpose register.
writeRegisterByte(int, byte) - Method in class avrora.sim.BaseInterpreter
  The `writeRegisterByte()` method writes a value to a general purpose register.
writeRegisterWord(Register, int) - Method in class avrora.sim.BaseInterpreter
  The `writeRegisterWord` method writes a word value to a general purpose register pair.
writeRegisterWord(int, int) - Method in class avrora.sim.BaseInterpreter
  The `writeRegisterWord` method writes a word value to a general purpose register pair.
writeSREG(byte) - Method in class avrora.sim.BaseInterpreter
  The `writeSREG()` method writes the value of the status register.
writeSREG(char) - Method in class avrora.stack.MutableState
  The `writeSREG` method updates the abstract value of the status register.
writeSREG(byte) - Method in class avrora.stack.isea.ISEInterpreter
writeSREG(byte) - Method in class avrora.stack.isea.ISEState

## X

X - Static variable in class avrora.core.Register
XDIV - Static variable in interface avrora.stack.IORegisterConstants
XMCRA - Static variable in interface avrora.stack.IORegisterConstants
XMCRB - Static variable in interface avrora.stack.IORegisterConstants
XOR - Static variable in interface avrora.core.isdl.parser.ISDLParserConstants
XorExpr() - Method in class avrora.syntax.atmel.AtmelParser
XorExpr() - Method in class avrora.syntax.gas.GASParser
Xor_Expr() - Method in class avrora.core.isdl.parser.ISDLParser
x - Variable in class avrora.sim.radio.freespace.Position
xTIFR_reg - Variable in class avrora.sim.mcu.Timer16Bit
xTIMSK_reg - Variable in class avrora.sim.mcu.Timer16Bit
xor(char, char) - Static method in class avrora.stack.AbstractArithmetic
  The `xor()` method computes the bitwise exclusive or operation on the two given abstract values.
xoscFrequency - Variable in class avrora.sim.radio.CC1000Radio

## Y

Y - Static variable in class avrora.core.Register
YZ_set - Static variable in class avrora.core.Register
y - Variable in class avrora.sim.radio.freespace.Position

## Z

Z - Static variable in class avrora.core.Register
Z - Variable in class avrora.sim.BaseInterpreter
ZERO - Static variable in class avrora.core.isdl.gen.ConstantPropagator
ZERO - Static variable in class avrora.stack.AbstractArithmetic
  The `ZERO` field represents the abstract value where all bits are known to be zero.
ZERO_FRAME - Static variable in class avrora.sim.mcu.SPI
Z_set - Static variable in class avrora.core.Register
z - Variable in class avrora.sim.radio.freespace.Position
zoomin() - Method in class avrora.gui.TimeScale
zoomout() - Method in class avrora.gui.TimeScale

## _

_1kb - Static variable in class avrora.sim.mcu.ATMega128
_1kb - Static variable in class avrora.sim.mcu.ATMega16
_1kb - Static variable in class avrora.sim.mcu.ATMega32
_512b - Static variable in class avrora.sim.mcu.ATMega16

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